Wall clock time and date at job start Tue Mar 31 2020 13:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46671 * 2 1 4 4 C 1.50696 * 109.47296 * 120.00501 * 2 1 3 5 5 H 1.08003 * 119.99849 * 120.00399 * 4 2 1 6 6 C 1.37872 * 119.99856 * 300.27418 * 4 2 1 7 7 N 1.31520 * 120.00098 * 179.72903 * 6 4 2 8 8 Si 1.86799 * 120.00266 * 359.72671 * 6 4 2 9 9 H 1.48497 * 109.47405 * 89.99865 * 8 6 4 10 10 H 1.48500 * 109.47301 * 210.00106 * 8 6 4 11 11 H 1.48505 * 109.47112 * 329.99999 * 8 6 4 12 12 N 1.46507 * 109.47008 * 240.00770 * 2 1 3 13 13 C 1.34777 * 120.00141 * 84.99490 * 12 2 1 14 14 O 1.21592 * 119.99887 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99833 * 179.97438 * 13 12 2 16 16 C 1.40149 * 119.99994 * 175.41028 * 15 13 12 17 17 C 1.38832 * 120.00850 * 215.64995 * 16 15 13 18 18 C 1.38138 * 120.02574 * 179.72473 * 17 16 15 19 19 C 1.38647 * 120.03289 * 0.54586 * 18 17 16 20 20 O 1.36027 * 119.98969 * 179.70553 * 19 18 17 21 21 C 1.42902 * 117.00175 * 5.95623 * 20 19 18 22 22 C 1.53786 * 113.61211 * 254.29439 * 21 20 19 23 23 C 1.53782 * 87.08090 * 220.01673 * 22 21 20 24 24 C 1.53775 * 113.61695 * 156.79996 * 21 20 19 25 25 C 1.38898 * 120.01665 * 359.72759 * 19 18 17 26 26 F 1.35101 * 120.01383 * 179.97438 * 25 19 18 27 27 C 1.38281 * 119.97122 * 359.97438 * 25 19 18 28 28 H 1.09006 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47444 * 299.99275 * 1 2 3 30 30 H 1.09000 * 109.47438 * 59.99865 * 1 2 3 31 31 H 0.96996 * 120.00207 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99744 * 264.99746 * 12 2 1 33 33 H 0.97001 * 120.00458 * 355.41451 * 15 13 12 34 34 H 1.08003 * 119.98679 * 359.97438 * 17 16 15 35 35 H 1.07992 * 119.98271 * 180.27671 * 18 17 16 36 36 H 1.09002 * 112.85118 * 25.59535 * 21 20 19 37 37 H 1.09005 * 113.61544 * 334.56465 * 22 21 20 38 38 H 1.09001 * 113.61445 * 105.46758 * 22 21 20 39 39 H 1.09000 * 113.61701 * 270.88293 * 23 22 21 40 40 H 1.09004 * 113.61265 * 139.97911 * 23 22 21 41 41 H 1.08999 * 113.61336 * 254.53167 * 24 21 20 42 42 H 1.09001 * 113.61661 * 25.34353 * 24 21 20 43 43 H 1.08009 * 120.01292 * 179.97438 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1311 6 6 1.6946 -0.2428 2.4826 7 7 2.1286 -0.8660 3.5564 8 14 0.6206 1.2759 2.6542 9 1 -0.8074 0.8705 2.6930 10 1 0.9673 1.9880 3.9104 11 1 0.8482 2.1766 1.4956 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0180 -2.3573 14 8 1.8581 1.1618 -2.4116 15 7 2.5966 -0.6531 -3.4576 16 6 2.6395 0.0193 -4.6865 17 6 2.3686 -0.6663 -5.8629 18 6 2.4052 -0.0026 -7.0739 19 6 2.7235 1.3462 -7.1166 20 8 2.7652 1.9975 -8.3100 21 6 2.3438 1.2663 -9.4632 22 6 3.5043 0.8240 -10.3702 23 6 2.6035 1.1814 -11.5643 24 6 1.8808 2.1612 -10.6249 25 6 3.0004 2.0323 -5.9411 26 9 3.3111 3.3465 -5.9828 27 6 2.9579 1.3698 -4.7281 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8907 -0.5372 4.4374 32 1 2.2490 -1.6316 -1.1529 33 1 2.8906 -1.5757 -3.3991 34 1 2.1253 -1.7181 -5.8310 35 1 2.1900 -0.5355 -7.9881 36 1 1.6448 0.4647 -9.2241 37 1 4.3890 1.4553 -10.2864 38 1 3.7334 -0.2392 -10.2989 39 1 1.9762 0.3558 -11.9006 40 1 3.1346 1.6707 -12.3808 41 1 0.7992 2.1776 -10.7592 42 1 2.3205 3.1585 -10.6099 43 1 3.1734 1.9026 -3.8136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161717612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:38 Heat of formation + Delta-G solvation = -51.510236 kcal Electronic energy + Delta-G solvation = -26473.308637 eV Core-core repulsion = 22434.812997 eV Total energy + Delta-G solvation = -4038.495639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.70715 -40.70473 -40.01056 -38.37235 -36.70085 -35.13248 -34.02363 -32.40592 -30.77143 -30.11549 -28.33802 -26.13459 -25.81577 -25.20406 -23.16426 -22.77455 -21.31868 -20.18833 -19.86687 -18.78037 -18.48643 -17.85691 -16.75610 -16.23970 -16.04102 -15.87081 -15.62398 -15.45533 -15.08039 -14.78593 -14.63407 -14.38330 -14.07599 -13.42432 -13.22710 -13.00666 -12.89987 -12.79633 -12.65609 -12.34906 -12.21245 -12.00453 -11.85479 -11.65186 -11.34812 -11.30876 -10.84118 -10.82309 -10.73146 -10.20856 -9.86760 -9.77017 -9.49776 -9.26141 -8.88643 -8.79256 -8.29341 -7.71684 -6.23454 -4.26434 1.05769 1.16627 2.84707 3.02181 3.22697 3.34431 3.35279 3.40065 3.73455 4.07344 4.09288 4.18974 4.29905 4.34038 4.35334 4.61290 4.68019 4.78638 4.98035 5.11400 5.12247 5.21554 5.30912 5.42021 5.45924 5.47520 5.56360 5.66926 5.81730 5.89864 5.98661 6.12932 6.29042 6.34531 6.42533 6.53564 6.77372 6.84638 6.99798 7.22564 7.24905 7.40083 7.49110 8.22476 8.54531 8.74350 9.00121 9.37126 10.88526 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.002340 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.563359 B =11960.452462 C =12309.427993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.253 3.747 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.710 5.710 13 C 0.694 3.306 14 O -0.583 6.583 15 N -0.692 5.692 16 C 0.173 3.827 17 C -0.123 4.123 18 C -0.164 4.164 19 C 0.072 3.928 20 O -0.297 6.297 21 C 0.052 3.948 22 C -0.156 4.156 23 C -0.141 4.141 24 C -0.132 4.132 25 C 0.089 3.911 26 F -0.131 7.131 27 C -0.119 4.119 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.407 0.593 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 -1.098 -28.066 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.149 3.851 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.361 5.361 13 C 0.395 3.605 14 O -0.461 6.461 15 N -0.341 5.341 16 C 0.076 3.924 17 C -0.144 4.144 18 C -0.183 4.183 19 C 0.026 3.974 20 O -0.211 6.211 21 C -0.004 4.004 22 C -0.194 4.194 23 C -0.178 4.178 24 C -0.170 4.170 25 C 0.068 3.932 26 F -0.110 7.110 27 C -0.140 4.140 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.242 0.758 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.644 0.209 -27.803 27.811 hybrid contribution -0.429 -0.239 0.348 0.602 sum 0.216 -0.030 -27.454 27.455 Atomic orbital electron populations 1.22481 0.99336 1.00861 0.99414 1.19047 0.89995 0.94467 0.81557 0.93194 1.21008 1.33317 1.14592 0.88449 0.90174 1.24821 0.95502 0.96732 0.95487 1.69863 1.44850 1.40046 0.98064 0.86872 0.80485 0.83575 0.77532 1.20297 1.22128 1.18563 1.45463 1.68493 1.13609 1.08521 1.16125 0.78543 0.85422 0.80440 1.90888 1.57151 1.14063 1.83987 1.42722 1.68552 1.16461 1.06322 1.17086 0.99112 0.91415 0.84763 1.20719 1.02346 1.00705 0.90601 1.20801 1.06088 0.92534 0.98873 1.18886 1.01820 0.91600 0.85125 1.86234 1.81381 1.40507 1.12948 1.24235 0.97418 0.95916 0.82831 1.23520 0.98298 1.02198 0.95362 1.22659 0.98878 0.99562 0.96710 1.23194 1.01216 0.99472 0.93094 1.16770 1.06241 0.78773 0.91387 1.91496 1.90700 1.31698 1.97095 1.21239 1.00627 0.94849 0.97290 0.92842 0.93367 0.94444 0.92232 0.77322 0.75756 0.84806 0.84367 0.88128 0.88874 0.90785 0.89688 0.90359 0.90476 0.88769 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.25 5.92 2.15 -69.08 -0.15 5.78 16 3 H 0.05 1.30 6.64 -51.93 -0.34 0.95 16 4 C -0.54 -14.20 9.31 -34.44 -0.32 -14.52 16 5 H 0.08 2.22 7.98 -52.48 -0.42 1.80 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 8 Si 0.89 21.63 24.37 -169.99 -4.14 17.49 16 9 H -0.28 -6.53 6.86 56.52 0.39 -6.14 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 12 N -0.71 -13.55 5.07 -59.81 -0.30 -13.86 16 13 C 0.69 12.87 8.37 -86.92 -0.73 12.14 16 14 O -0.58 -12.99 13.49 5.28 0.07 -12.92 16 15 N -0.69 -9.49 5.35 -14.19 -0.08 -9.57 16 16 C 0.17 2.36 6.29 -83.62 -0.53 1.84 16 17 C -0.12 -1.29 9.96 -39.40 -0.39 -1.68 16 18 C -0.16 -1.67 9.01 -39.47 -0.36 -2.02 16 19 C 0.07 0.92 6.68 -39.19 -0.26 0.66 16 20 O -0.30 -3.58 10.01 -19.82 -0.20 -3.78 16 21 C 0.05 0.42 3.67 -25.92 -0.10 0.33 16 22 C -0.16 -1.02 7.91 -25.92 -0.21 -1.22 16 23 C -0.14 -0.72 8.08 -25.92 -0.21 -0.93 16 24 C -0.13 -0.88 7.91 -25.92 -0.21 -1.09 16 25 C 0.09 1.34 7.31 -39.32 -0.29 1.05 16 26 F -0.13 -2.14 17.11 2.25 0.04 -2.10 16 27 C -0.12 -1.87 8.66 -39.35 -0.34 -2.21 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.10 3.25 -51.93 -0.17 0.94 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.39 6.40 8.56 -40.82 -0.35 6.06 16 33 H 0.41 4.07 8.84 -40.82 -0.36 3.71 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.14 0.99 5.92 -52.49 -0.31 0.68 16 36 H 0.10 0.68 5.98 -51.93 -0.31 0.37 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.16 2.91 6.28 -52.48 -0.33 2.58 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -32.62 354.55 -7.91 -40.54 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.58 Total: 7.25 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.84 Total: -3.06 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.39 Total: -48.75 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.13 Total: -16.70 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.62 -7.91 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161717612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.973 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds