Wall clock time and date at job start Tue Mar 31 2020 13:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46671 * 2 1 4 4 C 1.50696 * 109.47296 * 120.00501 * 2 1 3 5 5 H 1.08003 * 119.99849 * 120.00399 * 4 2 1 6 6 C 1.37872 * 119.99856 * 300.27418 * 4 2 1 7 7 N 1.31520 * 120.00098 * 179.72903 * 6 4 2 8 8 Si 1.86799 * 120.00266 * 359.72671 * 6 4 2 9 9 H 1.48497 * 109.47405 * 89.99865 * 8 6 4 10 10 H 1.48500 * 109.47301 * 210.00106 * 8 6 4 11 11 H 1.48505 * 109.47112 * 329.99999 * 8 6 4 12 12 N 1.46507 * 109.47008 * 240.00770 * 2 1 3 13 13 C 1.34777 * 120.00141 * 84.99490 * 12 2 1 14 14 O 1.21592 * 119.99887 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99833 * 179.97438 * 13 12 2 16 16 C 1.40149 * 119.99994 * 175.41028 * 15 13 12 17 17 C 1.38832 * 120.00850 * 215.64995 * 16 15 13 18 18 C 1.38138 * 120.02574 * 179.72473 * 17 16 15 19 19 C 1.38647 * 120.03289 * 0.54586 * 18 17 16 20 20 O 1.36027 * 119.98969 * 179.70553 * 19 18 17 21 21 C 1.42902 * 117.00175 * 5.95623 * 20 19 18 22 22 C 1.53786 * 113.61211 * 254.29439 * 21 20 19 23 23 C 1.53782 * 87.08090 * 220.01673 * 22 21 20 24 24 C 1.53775 * 113.61695 * 156.79996 * 21 20 19 25 25 C 1.38898 * 120.01665 * 359.72759 * 19 18 17 26 26 F 1.35101 * 120.01383 * 179.97438 * 25 19 18 27 27 C 1.38281 * 119.97122 * 359.97438 * 25 19 18 28 28 H 1.09006 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47444 * 299.99275 * 1 2 3 30 30 H 1.09000 * 109.47438 * 59.99865 * 1 2 3 31 31 H 0.96996 * 120.00207 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99744 * 264.99746 * 12 2 1 33 33 H 0.97001 * 120.00458 * 355.41451 * 15 13 12 34 34 H 1.08003 * 119.98679 * 359.97438 * 17 16 15 35 35 H 1.07992 * 119.98271 * 180.27671 * 18 17 16 36 36 H 1.09002 * 112.85118 * 25.59535 * 21 20 19 37 37 H 1.09005 * 113.61544 * 334.56465 * 22 21 20 38 38 H 1.09001 * 113.61445 * 105.46758 * 22 21 20 39 39 H 1.09000 * 113.61701 * 270.88293 * 23 22 21 40 40 H 1.09004 * 113.61265 * 139.97911 * 23 22 21 41 41 H 1.08999 * 113.61336 * 254.53167 * 24 21 20 42 42 H 1.09001 * 113.61661 * 25.34353 * 24 21 20 43 43 H 1.08009 * 120.01292 * 179.97438 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1311 6 6 1.6946 -0.2428 2.4826 7 7 2.1286 -0.8660 3.5564 8 14 0.6206 1.2759 2.6542 9 1 -0.8074 0.8705 2.6930 10 1 0.9673 1.9880 3.9104 11 1 0.8482 2.1766 1.4956 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0180 -2.3573 14 8 1.8581 1.1618 -2.4116 15 7 2.5966 -0.6531 -3.4576 16 6 2.6395 0.0193 -4.6865 17 6 2.3686 -0.6663 -5.8629 18 6 2.4052 -0.0026 -7.0739 19 6 2.7235 1.3462 -7.1166 20 8 2.7652 1.9975 -8.3100 21 6 2.3438 1.2663 -9.4632 22 6 3.5043 0.8240 -10.3702 23 6 2.6035 1.1814 -11.5643 24 6 1.8808 2.1612 -10.6249 25 6 3.0004 2.0323 -5.9411 26 9 3.3111 3.3465 -5.9828 27 6 2.9579 1.3698 -4.7281 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8907 -0.5372 4.4374 32 1 2.2490 -1.6316 -1.1529 33 1 2.8906 -1.5757 -3.3991 34 1 2.1253 -1.7181 -5.8310 35 1 2.1900 -0.5355 -7.9881 36 1 1.6448 0.4647 -9.2241 37 1 4.3890 1.4553 -10.2864 38 1 3.7334 -0.2392 -10.2989 39 1 1.9762 0.3558 -11.9006 40 1 3.1346 1.6707 -12.3808 41 1 0.7992 2.1776 -10.7592 42 1 2.3205 3.1585 -10.6099 43 1 3.1734 1.9026 -3.8136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161717612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:37 Heat of formation + Delta-G solvation = -73.918025 kcal Electronic energy + Delta-G solvation = -26474.280311 eV Core-core repulsion = 22434.812997 eV Total energy + Delta-G solvation = -4039.467314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.88215 -41.77152 -41.06414 -39.35570 -37.63344 -36.76322 -35.30498 -34.35786 -31.86964 -31.68125 -29.47388 -27.21545 -26.63058 -26.47429 -24.24605 -23.90509 -22.68059 -21.68384 -20.61509 -19.97435 -19.62932 -18.99690 -18.32708 -17.58147 -17.36085 -16.98663 -16.61626 -16.41922 -16.32013 -16.11800 -15.80115 -15.49105 -15.20201 -15.10476 -14.83265 -14.22747 -14.12132 -13.87002 -13.60898 -13.47844 -13.42593 -13.32796 -13.19984 -12.77558 -12.52179 -12.38623 -12.13741 -12.07985 -11.63575 -11.41056 -11.33617 -11.27426 -11.17615 -10.86838 -10.78497 -9.98626 -9.90240 -8.76639 -8.37878 -6.43415 0.06689 0.14673 1.27903 1.36896 1.45975 1.63214 2.03615 2.16424 2.26503 2.58591 2.98590 3.13097 3.36900 3.52945 3.60161 3.73645 3.84383 3.91676 3.98578 4.11299 4.34325 4.44865 4.48280 4.55816 4.68077 4.71063 4.79336 4.80729 4.91798 4.98326 5.00345 5.04103 5.06635 5.13174 5.15998 5.29159 5.32127 5.40878 5.44527 5.61618 5.77398 5.96132 6.27319 6.39007 6.59022 7.11709 7.23162 7.57653 8.77027 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.002340 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.563359 B =11960.452462 C =12309.427993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.260 3.740 3 H 0.022 0.978 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.937 3.063 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.265 1.265 12 N -0.707 5.707 13 C 0.695 3.305 14 O -0.624 6.624 15 N -0.669 5.669 16 C 0.151 3.849 17 C -0.095 4.095 18 C -0.150 4.150 19 C 0.078 3.922 20 O -0.318 6.318 21 C 0.036 3.964 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.138 4.138 25 C 0.054 3.946 26 F -0.150 7.150 27 C -0.139 4.139 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.270 0.730 32 H 0.408 0.592 33 H 0.428 0.572 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -3.213 -31.160 31.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.154 3.846 3 H 0.039 0.961 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.170 4.170 7 N -0.570 5.570 8 Si 0.764 3.236 9 H -0.184 1.184 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.359 5.359 13 C 0.395 3.605 14 O -0.504 6.504 15 N -0.320 5.320 16 C 0.055 3.945 17 C -0.115 4.115 18 C -0.169 4.169 19 C 0.031 3.969 20 O -0.233 6.233 21 C -0.019 4.019 22 C -0.193 4.193 23 C -0.165 4.165 24 C -0.176 4.176 25 C 0.034 3.966 26 F -0.129 7.129 27 C -0.160 4.160 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.244 0.756 33 H 0.267 0.733 34 H 0.195 0.805 35 H 0.197 0.803 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.602 -1.960 -30.957 31.025 hybrid contribution 0.042 0.394 1.129 1.196 sum -0.561 -1.566 -29.829 29.875 Atomic orbital electron populations 1.22363 0.97866 1.01800 0.99342 1.18660 0.91032 0.92870 0.82015 0.96050 1.21217 1.32258 1.13727 0.89666 0.92120 1.25511 0.96865 0.99198 0.95419 1.69962 1.46647 1.41803 0.98631 0.86043 0.79926 0.80507 0.77102 1.18438 1.22100 1.18951 1.45097 1.68906 1.14160 1.07785 1.16191 0.78322 0.84867 0.81091 1.90878 1.58781 1.16023 1.84744 1.42337 1.67447 1.17087 1.05109 1.17282 1.00740 0.90880 0.85570 1.21129 0.99139 1.02313 0.88921 1.21257 1.03980 0.91258 1.00371 1.19016 1.00682 0.92488 0.84716 1.86239 1.81461 1.42000 1.13569 1.24736 0.98758 0.96745 0.81668 1.23513 0.97467 1.02883 0.95472 1.22664 0.98309 0.99479 0.96082 1.23255 1.01987 0.99126 0.93190 1.17024 1.08664 0.78417 0.92514 1.91432 1.91177 1.33047 1.97231 1.21034 1.02534 0.96124 0.96340 0.91355 0.94128 0.93745 0.92043 0.75600 0.73305 0.80502 0.80265 0.86040 0.90331 0.89111 0.87719 0.89814 0.89497 0.90163 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.70 8.96 71.98 0.65 -6.05 16 2 C 0.26 12.15 2.15 44.24 0.10 12.25 16 3 H 0.02 1.14 6.64 -2.38 -0.02 1.12 16 4 C -0.53 -28.35 9.31 25.60 0.24 -28.11 16 5 H 0.06 3.41 7.98 -2.91 -0.02 3.39 16 6 C 0.03 1.68 5.45 84.65 0.46 2.14 16 7 N -0.93 -55.23 13.96 21.45 0.30 -54.93 16 8 Si 0.94 44.71 24.37 68.60 1.67 46.39 16 9 H -0.26 -11.56 6.86 99.48 0.68 -10.88 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.26 -12.71 6.54 99.48 0.65 -12.06 16 12 N -0.71 -26.61 5.07 -461.40 -2.34 -28.95 16 13 C 0.69 25.56 8.37 179.06 1.50 27.06 16 14 O -0.62 -28.51 13.49 -4.01 -0.05 -28.57 16 15 N -0.67 -17.29 5.35 -317.08 -1.70 -18.98 16 16 C 0.15 3.91 6.29 38.09 0.24 4.15 16 17 C -0.09 -1.59 9.96 22.39 0.22 -1.37 16 18 C -0.15 -2.45 9.01 22.34 0.20 -2.25 16 19 C 0.08 1.88 6.68 22.53 0.15 2.03 16 20 O -0.32 -7.34 10.01 -93.85 -0.94 -8.28 16 21 C 0.04 0.49 3.67 31.12 0.11 0.60 16 22 C -0.16 -1.59 7.91 31.12 0.25 -1.34 16 23 C -0.13 -0.90 8.08 31.12 0.25 -0.65 16 24 C -0.14 -1.56 7.91 31.12 0.25 -1.31 16 25 C 0.05 1.69 7.31 22.44 0.16 1.85 16 26 F -0.15 -5.26 17.11 44.97 0.77 -4.49 16 27 C -0.14 -4.53 8.66 22.42 0.19 -4.33 16 28 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.04 1.80 3.25 -2.39 -0.01 1.79 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.41 12.80 8.56 -92.71 -0.79 12.00 16 33 H 0.43 7.32 8.84 -92.71 -0.82 6.50 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.18 1.47 5.92 -2.91 -0.02 1.45 16 36 H 0.12 1.08 5.98 -2.39 -0.01 1.06 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.13 4.97 6.28 -2.91 -0.02 4.95 16 Total: -1.00 -74.41 354.55 2.06 -72.35 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.62 Total: 20.80 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 4.97 Total: 4.66 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.74 Total: -102.87 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.99 Total: -36.85 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.77 Total: -4.49 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.67 Total: 46.39 kcal Total: -74.41 2.06 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161717612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.565 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds