Wall clock time and date at job start Tue Mar 31 2020 13:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47138 * 2 1 4 4 C 1.50703 * 109.47020 * 120.00006 * 2 1 3 5 5 H 1.07998 * 119.99758 * 119.99482 * 4 2 1 6 6 C 1.37874 * 120.00056 * 299.99918 * 4 2 1 7 7 N 1.31511 * 120.00050 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99922 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46878 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47109 * 119.99924 * 8 6 4 11 11 H 1.48499 * 109.47237 * 240.00203 * 8 6 4 12 12 N 1.46901 * 109.47090 * 239.99820 * 2 1 3 13 13 C 1.46897 * 110.99911 * 183.95621 * 12 2 1 14 14 C 1.46901 * 110.99824 * 60.00042 * 12 2 1 15 15 C 1.50695 * 109.47136 * 189.99747 * 14 12 2 16 16 C 1.38310 * 119.96657 * 269.97748 * 15 14 12 17 17 C 1.38277 * 120.14545 * 180.02562 * 16 15 14 18 18 C 1.38117 * 120.07099 * 359.68503 * 17 16 15 19 19 C 1.38881 * 119.92821 * 0.61580 * 18 17 16 20 20 S 1.76191 * 120.07194 * 179.68077 * 19 18 17 21 21 C 1.76200 * 100.00082 * 264.83114 * 20 19 18 22 22 O 1.21615 * 119.99952 * 5.13605 * 21 20 19 23 23 N 1.34779 * 120.00472 * 185.14205 * 21 20 19 24 24 C 1.46499 * 120.00293 * 179.97438 * 23 21 20 25 25 C 1.46501 * 119.99492 * 0.02562 * 23 21 20 26 26 C 1.38083 * 119.96503 * 90.00232 * 15 14 12 27 27 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46823 * 299.99940 * 1 2 3 29 29 H 1.08997 * 109.46818 * 59.99700 * 1 2 3 30 30 H 0.97001 * 120.00183 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46920 * 296.04600 * 13 12 2 32 32 H 1.09000 * 109.47439 * 56.04687 * 13 12 2 33 33 H 1.09000 * 109.46884 * 176.05235 * 13 12 2 34 34 H 1.09002 * 109.46761 * 69.99879 * 14 12 2 35 35 H 1.08998 * 109.47032 * 310.00507 * 14 12 2 36 36 H 1.07997 * 119.92803 * 0.02562 * 16 15 14 37 37 H 1.08003 * 119.95941 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.04052 * 180.31556 * 18 17 16 39 39 H 1.09002 * 109.46526 * 60.00054 * 24 23 21 40 40 H 1.09000 * 109.47135 * 179.97438 * 24 23 21 41 41 H 1.08995 * 109.47226 * 300.00470 * 24 23 21 42 42 H 1.08997 * 109.47569 * 89.99958 * 25 23 21 43 43 H 1.08998 * 109.46903 * 210.00005 * 25 23 21 44 44 H 1.09002 * 109.47252 * 329.99776 * 25 23 21 45 45 H 1.08003 * 120.03552 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.1465 -2.2871 3.6037 10 1 3.1467 -0.1876 4.8165 11 1 1.1661 -1.5868 4.8161 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5487 -0.0264 -2.4211 15 6 1.8580 -0.8911 -3.6159 16 6 3.0630 -0.7472 -4.2794 17 6 3.3504 -1.5383 -5.3765 18 6 2.4371 -2.4797 -5.8092 19 6 1.2236 -2.6225 -5.1490 20 16 0.0523 -3.8164 -5.7029 21 6 -0.9567 -2.8013 -6.7306 22 8 -0.6474 -1.6425 -6.9322 23 7 -2.0712 -3.3090 -7.2934 24 6 -2.9103 -2.4648 -8.1475 25 6 -2.4440 -4.7047 -7.0501 26 6 0.9379 -1.8260 -4.0473 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.7082 1.1608 3.4844 31 1 3.9193 0.2043 -1.2300 32 1 3.8070 -1.2916 -0.2718 33 1 3.8164 -1.3722 -2.0500 34 1 2.0519 0.9345 -2.5280 35 1 0.4723 0.1324 -2.3563 36 1 3.7809 -0.0153 -3.9400 37 1 4.2921 -1.4231 -5.8927 38 1 2.6642 -3.1008 -6.6630 39 1 -2.3247 -2.1107 -8.9959 40 1 -3.7596 -3.0444 -8.5092 41 1 -3.2706 -1.6113 -7.5732 42 1 -3.0827 -4.7618 -6.1687 43 1 -2.9824 -5.0929 -7.9147 44 1 -1.5444 -5.2978 -6.8859 45 1 -0.0032 -1.9373 -3.5293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177365425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:36 Heat of formation + Delta-G solvation = -8.614662 kcal Electronic energy + Delta-G solvation = -24629.202218 eV Core-core repulsion = 21158.779847 eV Total energy + Delta-G solvation = -3470.422371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61115 -40.44974 -38.43267 -36.81042 -34.98854 -32.74987 -32.06820 -30.85718 -29.33839 -28.49539 -27.49132 -26.62050 -25.04025 -23.98589 -22.82209 -22.29778 -21.16831 -19.07365 -18.39933 -17.82237 -17.55951 -17.17884 -16.97433 -16.69798 -16.42051 -15.85872 -15.54905 -15.39968 -14.99504 -14.65654 -14.36792 -14.25336 -13.95433 -13.82697 -13.60522 -13.57256 -13.51339 -13.31768 -12.97399 -12.92030 -12.78706 -12.71222 -12.56314 -12.20121 -12.11281 -12.03990 -11.84772 -11.57445 -10.96018 -10.90433 -10.53934 -10.02115 -9.87700 -9.77424 -9.36283 -8.95396 -8.11927 -6.23783 -0.40362 0.37780 0.49341 1.03821 1.17955 1.41112 1.43024 1.54936 2.31680 2.41694 2.66656 3.16556 3.48526 3.75089 3.93061 4.08894 4.14877 4.22455 4.30561 4.35430 4.42406 4.48277 4.53074 4.66466 4.66486 4.71470 4.78636 4.83726 4.86397 4.93589 4.96850 5.02683 5.06316 5.23217 5.25756 5.29025 5.35730 5.47490 5.56866 5.71207 5.75968 5.88872 5.90748 6.23491 6.37119 6.61752 6.68586 6.90585 7.45338 8.94407 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.002874 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.494819 B = 9739.689419 C =10399.579855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.216 3.784 3 H -0.035 1.035 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.537 5.537 13 C 0.040 3.960 14 C 0.090 3.910 15 C -0.084 4.084 16 C -0.085 4.085 17 C -0.123 4.123 18 C -0.067 4.067 19 C -0.145 4.145 20 S -0.017 6.017 21 C 0.487 3.513 22 O -0.563 6.563 23 N -0.604 5.604 24 C 0.088 3.912 25 C 0.066 3.934 26 C -0.054 4.054 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.011 0.989 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.056 0.944 40 H 0.119 0.881 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -11.252 -22.950 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H -0.018 1.018 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.262 5.262 13 C -0.108 4.108 14 C -0.037 4.037 15 C -0.087 4.087 16 C -0.104 4.104 17 C -0.142 4.142 18 C -0.087 4.087 19 C -0.257 4.257 20 S 0.216 5.784 21 C 0.168 3.832 22 O -0.445 6.445 23 N -0.339 5.339 24 C -0.057 4.057 25 C -0.075 4.075 26 C -0.076 4.076 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.180 0.820 38 H 0.168 0.832 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.657 -12.207 -22.683 26.017 hybrid contribution 0.436 2.248 0.971 2.487 sum -3.221 -9.959 -21.712 24.103 Atomic orbital electron populations 1.21687 0.97461 0.99242 0.99657 1.19068 0.92570 0.90290 0.87113 1.01791 1.21438 1.31060 1.12248 0.90791 0.92164 1.25721 0.95361 0.95763 1.01932 1.70027 1.37796 1.24269 1.24017 0.85457 0.78118 0.78607 0.79157 1.19111 1.20678 1.20605 1.62097 1.10608 1.52183 1.01286 1.22242 0.87625 0.98971 1.01970 1.21051 1.00770 0.93686 0.88238 1.19826 0.95200 0.97354 0.96280 1.21495 0.95354 0.98781 0.94751 1.21458 1.00705 0.95338 0.96693 1.21679 0.91814 0.96913 0.98313 1.21532 0.99236 1.03859 1.01027 1.84536 1.27861 1.11980 1.54040 1.23202 0.85287 0.90423 0.84333 1.90866 1.71686 1.18831 1.63162 1.48002 1.22971 1.14493 1.48414 1.21870 0.94910 0.95432 0.93487 1.22218 1.02368 0.78549 1.04411 1.21256 0.98972 0.93173 0.94165 0.94998 0.91951 0.95374 0.92924 0.97049 0.92143 0.90979 0.94863 0.90886 0.84534 0.82009 0.83162 0.92483 0.86261 0.93228 0.90766 0.86876 0.90408 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.76 71.98 0.63 -5.58 16 2 C 0.22 11.32 2.06 44.17 0.09 11.41 16 3 H -0.04 -2.05 8.14 -2.39 -0.02 -2.07 16 4 C -0.52 -28.87 7.88 25.60 0.20 -28.67 16 5 H 0.06 3.35 6.41 -2.91 -0.02 3.33 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.65 11.32 21.45 0.24 -53.41 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.54 -23.86 4.61 -906.03 -4.18 -28.04 16 13 C 0.04 1.60 8.86 127.69 1.13 2.73 16 14 C 0.09 3.49 4.93 85.56 0.42 3.91 16 15 C -0.08 -2.83 4.88 -19.89 -0.10 -2.93 16 16 C -0.09 -2.36 7.96 22.30 0.18 -2.19 16 17 C -0.12 -2.84 10.04 22.25 0.22 -2.62 16 18 C -0.07 -1.65 9.79 22.40 0.22 -1.43 16 19 C -0.14 -4.23 4.73 22.59 0.11 -4.13 16 20 S -0.02 -0.41 20.04 -56.49 -1.13 -1.55 16 21 C 0.49 12.90 7.90 129.79 1.03 13.92 16 22 O -0.56 -19.53 16.08 -4.08 -0.07 -19.60 16 23 N -0.60 -11.11 3.27 -884.42 -2.90 -14.00 16 24 C 0.09 1.26 10.16 127.77 1.30 2.56 16 25 C 0.07 0.67 10.19 127.77 1.30 1.97 16 26 C -0.05 -1.83 9.44 22.39 0.21 -1.62 16 27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 29 H 0.03 1.27 6.20 -2.39 -0.01 1.25 16 30 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.01 0.43 8.14 -2.38 -0.02 0.42 16 32 H 0.06 2.61 6.10 -2.39 -0.01 2.59 16 33 H 0.07 2.47 6.17 -2.39 -0.01 2.46 16 34 H 0.03 1.26 8.06 -2.39 -0.02 1.24 16 35 H 0.07 2.92 5.77 -2.39 -0.01 2.91 16 36 H 0.14 3.38 8.03 -2.91 -0.02 3.36 16 37 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 0.72 7.79 -2.39 -0.02 0.70 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.11 0.41 7.92 -2.39 -0.02 0.39 16 44 H 0.08 0.81 6.58 -2.39 -0.02 0.80 16 45 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -71.62 375.51 2.36 -69.26 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.98 Total: 12.83 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 7.39 Total: -11.60 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -6.83 Total: -95.45 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.07 Total: -19.60 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.13 Total: -1.55 kcal Total: -71.62 2.36 -69.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177365425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.640 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds