Wall clock time and date at job start Tue Mar 31 2020 13:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 C 1.53003 * 109.47059 * 180.02562 * 16 14 12 18 18 N 1.46493 * 109.47228 * 180.02562 * 17 16 14 19 19 C 1.34783 * 120.00099 * 179.97438 * 18 17 16 20 20 O 1.21570 * 119.99668 * 359.97438 * 19 18 17 21 21 C 1.47719 * 120.00162 * 179.97438 * 19 18 17 22 22 C 1.39657 * 120.11774 * 359.72190 * 21 19 18 23 23 C 1.37837 * 119.87565 * 179.74468 * 22 21 19 24 24 C 1.38654 * 120.12373 * 0.50999 * 23 22 21 25 25 F 1.35099 * 119.88192 * 179.74053 * 24 23 22 26 26 C 1.38657 * 120.23580 * 359.77108 * 24 23 22 27 27 C 1.37833 * 120.11850 * 359.96790 * 26 24 23 28 28 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 29 29 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 30 30 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 31 31 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 32 32 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 33 33 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 34 34 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 35 35 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 36 36 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 37 37 H 1.09000 * 109.46813 * 299.99811 * 17 16 14 38 38 H 1.08998 * 109.47365 * 59.99615 * 17 16 14 39 39 H 0.96997 * 120.00413 * 359.97438 * 18 17 16 40 40 H 1.07997 * 120.05847 * 359.97438 * 22 21 19 41 41 H 1.08002 * 119.93621 * 180.25268 * 23 22 21 42 42 H 1.07999 * 119.94227 * 179.97438 * 26 24 23 43 43 H 1.08003 * 120.06094 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 6 4.1447 0.2159 4.1471 18 7 4.6330 -0.4746 5.3432 19 6 5.4081 0.1803 6.2303 20 8 5.7022 1.3440 6.0376 21 6 5.9000 -0.5159 7.4367 22 6 5.5588 -1.8510 7.6635 23 6 6.0250 -2.4973 8.7881 24 6 6.8225 -1.8213 9.6989 25 9 7.2724 -2.4581 10.8022 26 6 7.1595 -0.4940 9.4816 27 6 6.7032 0.1603 8.3575 28 1 -0.3633 0.6023 0.8326 29 1 -0.3634 0.4199 -0.9379 30 1 -0.3633 -1.0222 0.1053 31 1 2.2553 -1.8357 -3.4698 32 1 2.4157 -2.7377 0.9717 33 1 1.6237 -2.2852 2.5002 34 1 0.6904 -2.3002 0.9847 35 1 2.4470 -1.0880 3.9073 36 1 3.9004 -1.6025 3.0178 37 1 4.9927 0.5584 3.5541 38 1 3.5391 1.0724 4.4434 39 1 4.3987 -1.4033 5.4968 40 1 4.9339 -2.3771 6.9570 41 1 5.7651 -3.5310 8.9624 42 1 7.7807 0.0281 10.1943 43 1 6.9659 1.1943 8.1894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264085466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:40 Heat of formation + Delta-G solvation = -90.327158 kcal Electronic energy + Delta-G solvation = -25896.934633 eV Core-core repulsion = 21856.755766 eV Total energy + Delta-G solvation = -4040.178867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.44859 -40.52165 -39.40578 -38.43865 -35.83160 -35.18788 -32.95449 -32.07968 -31.54749 -30.76131 -29.53332 -26.37702 -25.11595 -24.65178 -23.67680 -23.03630 -21.01989 -20.73084 -18.74771 -18.27413 -17.68057 -17.56292 -17.09870 -16.53220 -16.16927 -15.99625 -15.67729 -15.30594 -15.04104 -15.00830 -14.28917 -14.03168 -13.93431 -13.67942 -13.59077 -13.12704 -13.02662 -12.77266 -12.75148 -12.46017 -12.26728 -11.83212 -11.68739 -11.59821 -11.56327 -11.42735 -11.24687 -10.50298 -10.28501 -10.00526 -9.78071 -9.73064 -9.41004 -9.24839 -9.15854 -9.08265 -8.36601 -7.84375 -6.52544 -4.17478 0.19849 0.66744 2.40203 2.77883 3.14465 3.31156 3.35855 3.47520 3.59143 3.63774 3.79136 4.11544 4.29101 4.30169 4.42979 4.63669 4.70763 4.79929 4.96725 5.02326 5.19623 5.24417 5.34186 5.34959 5.50677 5.57810 5.61203 5.72710 5.81703 5.89840 5.96609 6.10205 6.16341 6.25231 6.32637 6.37514 6.55312 6.91381 7.08353 7.20260 7.36433 7.79628 7.93087 8.21917 8.29704 8.69558 8.87641 9.51033 10.85224 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.002060 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.841555 B =13590.300260 C =14053.518000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.233 3.767 3 H 0.056 0.944 4 C -0.610 4.610 5 H 0.060 0.940 6 C 0.035 3.965 7 N -0.901 5.901 8 Si 1.040 2.960 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.587 5.587 13 C 0.087 3.913 14 C 0.508 3.492 15 O -0.550 6.550 16 C -0.152 4.152 17 C 0.134 3.866 18 N -0.725 5.725 19 C 0.557 3.443 20 O -0.529 6.529 21 C -0.143 4.143 22 C -0.057 4.057 23 C -0.161 4.161 24 C 0.122 3.878 25 F -0.135 7.135 26 C -0.161 4.161 27 C -0.030 4.030 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.398 0.602 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -6.096 25.975 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.131 3.869 3 H 0.073 0.927 4 C -0.648 4.648 5 H 0.078 0.922 6 C -0.171 4.171 7 N -0.534 5.534 8 Si 0.868 3.132 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.204 1.204 12 N -0.318 5.318 13 C -0.056 4.056 14 C 0.294 3.706 15 O -0.429 6.429 16 C -0.193 4.193 17 C 0.011 3.989 18 N -0.377 5.377 19 C 0.344 3.656 20 O -0.406 6.406 21 C -0.146 4.146 22 C -0.076 4.076 23 C -0.179 4.179 24 C 0.102 3.898 25 F -0.114 7.114 26 C -0.180 4.180 27 C -0.049 4.049 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.233 0.767 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.251 -3.525 24.594 25.394 hybrid contribution 0.422 -2.185 1.338 2.597 sum 5.673 -5.710 25.933 27.153 Atomic orbital electron populations 1.22520 0.98670 1.00282 1.00482 1.19217 0.90411 0.94808 0.82471 0.92650 1.22146 1.41196 1.10467 0.91027 0.92206 1.25693 0.94558 1.04951 0.91869 1.70879 1.41279 1.09976 1.31283 0.84112 0.77485 0.75406 0.76193 1.20942 1.19950 1.20395 1.47962 1.48998 1.11758 1.23044 1.21579 1.01846 0.82858 0.99354 1.20080 0.79337 0.87061 0.84157 1.90687 1.58184 1.17067 1.76939 1.21839 1.01028 1.00025 0.96378 1.21129 0.98776 0.94632 0.84348 1.45932 1.52289 1.15727 1.23768 1.18099 0.78561 0.86356 0.82632 1.90829 1.57265 1.16260 1.76244 1.20075 1.02678 0.94801 0.97038 1.21192 0.97025 0.93146 0.96264 1.21099 1.00281 1.01542 0.95022 1.17993 0.96361 0.91227 0.84221 1.91532 1.87196 1.81886 1.50744 1.21179 1.03560 0.93314 0.99920 1.21188 0.92344 1.00630 0.90775 0.95476 0.91527 0.93385 0.92256 0.93084 0.92708 0.90775 0.88729 0.88620 0.90093 0.90184 0.76719 0.84444 0.83934 0.83879 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.96 37.16 0.33 -3.08 16 2 C 0.23 5.51 2.22 -69.08 -0.15 5.35 16 3 H 0.06 1.45 5.56 -51.93 -0.29 1.16 16 4 C -0.61 -16.53 8.68 -34.44 -0.30 -16.83 16 5 H 0.06 1.72 7.75 -52.48 -0.41 1.31 16 6 C 0.04 1.00 5.30 -17.82 -0.09 0.90 16 7 N -0.90 -26.91 13.70 55.43 0.76 -26.15 16 8 Si 1.04 25.22 26.29 -169.99 -4.47 20.75 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.05 5.74 56.52 0.32 -5.73 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 N -0.59 -11.52 2.75 -175.26 -0.48 -12.00 16 13 C 0.09 1.31 9.43 59.85 0.56 1.88 16 14 C 0.51 9.46 7.67 -10.99 -0.08 9.38 16 15 O -0.55 -12.58 15.31 5.56 0.09 -12.50 16 16 C -0.15 -1.83 4.37 -27.88 -0.12 -1.95 16 17 C 0.13 1.74 4.96 -4.04 -0.02 1.72 16 18 N -0.73 -7.06 5.51 -61.29 -0.34 -7.40 16 19 C 0.56 6.48 7.77 -12.38 -0.10 6.38 16 20 O -0.53 -8.39 16.34 5.30 0.09 -8.31 16 21 C -0.14 -1.25 5.87 -104.97 -0.62 -1.86 16 22 C -0.06 -0.35 9.54 -39.20 -0.37 -0.73 16 23 C -0.16 -0.96 10.01 -39.57 -0.40 -1.36 16 24 C 0.12 0.88 7.31 -39.27 -0.29 0.59 16 25 F -0.14 -1.08 17.26 2.25 0.04 -1.04 16 26 C -0.16 -1.11 10.01 -39.57 -0.40 -1.51 16 27 C -0.03 -0.25 9.59 -39.20 -0.38 -0.63 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.47 4.85 -51.93 -0.25 1.22 16 30 H 0.05 0.94 6.45 -51.93 -0.33 0.60 16 31 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 32 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 34 H 0.07 1.15 6.33 -51.93 -0.33 0.82 16 35 H 0.09 0.86 7.40 -51.93 -0.38 0.48 16 36 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.40 2.41 6.50 -40.82 -0.27 2.14 16 40 H 0.14 0.46 6.40 -52.49 -0.34 0.13 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.15 1.21 7.65 -52.48 -0.40 0.81 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -35.18 359.48 -6.83 -42.01 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.51 Total: 0.96 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.42 Total: -1.75 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.06 Total: -45.55 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.17 Total: -20.81 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -4.47 Total: 20.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.18 -6.83 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264085466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.318 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds