Wall clock time and date at job start Tue Mar 31 2020 13:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 C 1.53003 * 109.47059 * 180.02562 * 16 14 12 18 18 N 1.46493 * 109.47228 * 180.02562 * 17 16 14 19 19 C 1.34783 * 120.00099 * 179.97438 * 18 17 16 20 20 O 1.21570 * 119.99668 * 359.97438 * 19 18 17 21 21 C 1.47719 * 120.00162 * 179.97438 * 19 18 17 22 22 C 1.39657 * 120.11774 * 359.72190 * 21 19 18 23 23 C 1.37837 * 119.87565 * 179.74468 * 22 21 19 24 24 C 1.38654 * 120.12373 * 0.50999 * 23 22 21 25 25 F 1.35099 * 119.88192 * 179.74053 * 24 23 22 26 26 C 1.38657 * 120.23580 * 359.77108 * 24 23 22 27 27 C 1.37833 * 120.11850 * 359.96790 * 26 24 23 28 28 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 29 29 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 30 30 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 31 31 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 32 32 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 33 33 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 34 34 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 35 35 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 36 36 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 37 37 H 1.09000 * 109.46813 * 299.99811 * 17 16 14 38 38 H 1.08998 * 109.47365 * 59.99615 * 17 16 14 39 39 H 0.96997 * 120.00413 * 359.97438 * 18 17 16 40 40 H 1.07997 * 120.05847 * 359.97438 * 22 21 19 41 41 H 1.08002 * 119.93621 * 180.25268 * 23 22 21 42 42 H 1.07999 * 119.94227 * 179.97438 * 26 24 23 43 43 H 1.08003 * 120.06094 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 6 4.1447 0.2159 4.1471 18 7 4.6330 -0.4746 5.3432 19 6 5.4081 0.1803 6.2303 20 8 5.7022 1.3440 6.0376 21 6 5.9000 -0.5159 7.4367 22 6 5.5588 -1.8510 7.6635 23 6 6.0250 -2.4973 8.7881 24 6 6.8225 -1.8213 9.6989 25 9 7.2724 -2.4581 10.8022 26 6 7.1595 -0.4940 9.4816 27 6 6.7032 0.1603 8.3575 28 1 -0.3633 0.6023 0.8326 29 1 -0.3634 0.4199 -0.9379 30 1 -0.3633 -1.0222 0.1053 31 1 2.2553 -1.8357 -3.4698 32 1 2.4157 -2.7377 0.9717 33 1 1.6237 -2.2852 2.5002 34 1 0.6904 -2.3002 0.9847 35 1 2.4470 -1.0880 3.9073 36 1 3.9004 -1.6025 3.0178 37 1 4.9927 0.5584 3.5541 38 1 3.5391 1.0724 4.4434 39 1 4.3987 -1.4033 5.4968 40 1 4.9339 -2.3771 6.9570 41 1 5.7651 -3.5310 8.9624 42 1 7.7807 0.0281 10.1943 43 1 6.9659 1.1943 8.1894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264085466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:39 Heat of formation + Delta-G solvation = -115.390707 kcal Electronic energy + Delta-G solvation = -25898.021470 eV Core-core repulsion = 21856.755766 eV Total energy + Delta-G solvation = -4041.265704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.01462 -41.37458 -40.79874 -39.17121 -37.37827 -36.34221 -34.87222 -33.09170 -32.20740 -31.99111 -30.68109 -27.70208 -26.79972 -25.91836 -24.34894 -23.80929 -22.41652 -21.75933 -20.01610 -19.53886 -19.17549 -18.41367 -18.22768 -17.46552 -17.16779 -16.93222 -16.69596 -16.34518 -16.18640 -15.86495 -15.61061 -15.08925 -14.99797 -14.69126 -14.59123 -14.44456 -14.22484 -14.15082 -13.78302 -13.67682 -13.38095 -13.27743 -13.18720 -13.12291 -12.68493 -12.45346 -12.39059 -12.07292 -11.84090 -11.65576 -11.26732 -11.17197 -10.72285 -10.48178 -10.31974 -10.22264 -9.80941 -9.50463 -8.71470 -6.40002 -0.41175 0.17371 1.40906 1.50915 1.65528 1.67411 1.72729 1.84648 2.40435 2.45846 2.66184 3.03050 3.11331 3.51886 3.62518 3.73769 3.83506 3.86423 4.04109 4.16414 4.23900 4.33081 4.51139 4.53851 4.67297 4.73298 4.73787 4.74585 4.86012 4.86411 4.90481 4.99973 5.01025 5.07378 5.15195 5.21061 5.26536 5.42080 5.69866 5.72149 5.81830 6.02598 6.43669 6.55987 6.72814 7.11473 7.27599 7.39966 8.61740 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.002060 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.841555 B =13590.300260 C =14053.518000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.230 3.770 3 H 0.028 0.972 4 C -0.602 4.602 5 H 0.033 0.967 6 C -0.012 4.012 7 N -0.932 5.932 8 Si 1.071 2.929 9 H -0.283 1.283 10 H -0.238 1.238 11 H -0.284 1.284 12 N -0.597 5.597 13 C 0.082 3.918 14 C 0.496 3.504 15 O -0.603 6.603 16 C -0.132 4.132 17 C 0.143 3.857 18 N -0.705 5.705 19 C 0.554 3.446 20 O -0.583 6.583 21 C -0.158 4.158 22 C -0.045 4.045 23 C -0.155 4.155 24 C 0.114 3.886 25 F -0.140 7.140 26 C -0.162 4.162 27 C -0.043 4.043 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.256 0.744 32 H 0.045 0.955 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.420 0.580 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.157 0.843 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -8.254 28.627 30.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 H 0.046 0.954 4 C -0.640 4.640 5 H 0.052 0.948 6 C -0.212 4.212 7 N -0.567 5.567 8 Si 0.894 3.106 9 H -0.209 1.209 10 H -0.162 1.162 11 H -0.211 1.211 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.285 3.715 15 O -0.486 6.486 16 C -0.171 4.171 17 C 0.018 3.982 18 N -0.358 5.358 19 C 0.343 3.657 20 O -0.464 6.464 21 C -0.161 4.161 22 C -0.063 4.063 23 C -0.173 4.173 24 C 0.094 3.906 25 F -0.118 7.118 26 C -0.180 4.180 27 C -0.062 4.062 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.260 0.740 40 H 0.189 0.811 41 H 0.188 0.812 42 H 0.175 0.825 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.016 -5.775 27.289 28.181 hybrid contribution 0.895 -1.592 0.601 1.922 sum 4.911 -7.367 27.890 29.262 Atomic orbital electron populations 1.22346 0.96301 1.01684 1.00739 1.18931 0.92139 0.93304 0.83038 0.95449 1.22330 1.39769 1.09259 0.92689 0.94846 1.26814 0.94719 1.07629 0.92019 1.70983 1.43780 1.09754 1.32228 0.83711 0.78751 0.71579 0.76513 1.20911 1.16202 1.21065 1.48027 1.49272 1.13522 1.21908 1.21863 1.01200 0.79894 1.03048 1.21195 0.78118 0.86699 0.85483 1.90667 1.59791 1.19748 1.78344 1.21766 1.02638 0.99400 0.93311 1.20787 0.97440 0.94816 0.85132 1.45634 1.51422 1.16535 1.22215 1.18595 0.77924 0.85828 0.83335 1.90805 1.59283 1.18752 1.77525 1.19932 1.04012 0.96076 0.96117 1.21481 0.96404 0.91733 0.96681 1.21409 0.99103 1.02648 0.94166 1.18227 0.96626 0.91358 0.84380 1.91525 1.87322 1.81907 1.51088 1.21279 1.03533 0.93556 0.99665 1.21191 0.93008 1.00507 0.91500 0.93297 0.92729 0.91850 0.93511 0.93665 0.87034 0.91297 0.84103 0.85568 0.93373 0.92411 0.74037 0.81063 0.81232 0.82517 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.14 8.96 71.98 0.64 -5.49 16 2 C 0.23 10.73 2.22 44.24 0.10 10.83 16 3 H 0.03 1.45 5.56 -2.39 -0.01 1.44 16 4 C -0.60 -33.01 8.68 25.60 0.22 -32.78 16 5 H 0.03 1.96 7.75 -2.91 -0.02 1.94 16 6 C -0.01 -0.68 5.30 84.65 0.45 -0.23 16 7 N -0.93 -56.94 13.70 21.45 0.29 -56.64 16 8 Si 1.07 51.25 26.29 68.60 1.80 53.05 16 9 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.24 -9.96 5.74 99.48 0.57 -9.39 16 11 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 12 N -0.60 -22.34 2.75 -826.80 -2.28 -24.61 16 13 C 0.08 2.18 9.43 127.77 1.20 3.38 16 14 C 0.50 17.73 7.67 87.66 0.67 18.41 16 15 O -0.60 -28.00 15.31 -3.02 -0.05 -28.05 16 16 C -0.13 -2.68 4.37 29.85 0.13 -2.54 16 17 C 0.14 3.52 4.96 86.38 0.43 3.95 16 18 N -0.70 -11.96 5.51 -466.09 -2.57 -14.53 16 19 C 0.55 12.47 7.77 86.75 0.67 13.14 16 20 O -0.58 -19.20 16.34 -3.94 -0.06 -19.26 16 21 C -0.16 -2.51 5.87 -20.09 -0.12 -2.63 16 22 C -0.04 -0.38 9.54 22.52 0.21 -0.16 16 23 C -0.15 -1.28 10.01 22.27 0.22 -1.06 16 24 C 0.11 1.37 7.31 22.47 0.16 1.54 16 25 F -0.14 -1.93 17.26 44.97 0.78 -1.15 16 26 C -0.16 -2.04 10.01 22.27 0.22 -1.82 16 27 C -0.04 -0.69 9.59 22.52 0.22 -0.47 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 2.30 4.85 -2.39 -0.01 2.29 16 30 H 0.06 2.32 6.45 -2.39 -0.02 2.30 16 31 H 0.26 15.66 8.73 -92.71 -0.81 14.85 16 32 H 0.04 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.11 1.68 6.44 -2.39 -0.02 1.66 16 34 H 0.07 1.91 6.33 -2.39 -0.02 1.90 16 35 H 0.14 1.65 7.40 -2.39 -0.02 1.64 16 36 H 0.13 1.91 8.11 -2.39 -0.02 1.89 16 37 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 39 H 0.42 3.09 6.50 -92.71 -0.60 2.48 16 40 H 0.17 0.18 6.40 -2.91 -0.02 0.16 16 41 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 42 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.14 2.42 7.65 -2.91 -0.02 2.39 16 Total: -1.00 -83.04 359.48 3.64 -79.40 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.28 Total: 7.75 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.45 Total: 4.05 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.55 Total: -95.78 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.11 Total: -47.31 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 1.80 Total: 53.05 kcal Total: -83.04 3.64 -79.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264085466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.995 kcal (2) G-P(sol) polarization free energy of solvation -83.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds