Wall clock time and date at job start Tue Mar 31 2020 13:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21602 * 120.00487 * 359.97438 * 13 12 2 15 15 C 1.47436 * 119.99704 * 179.97438 * 13 12 2 16 16 C 1.39763 * 120.19558 * 0.02562 * 15 13 12 17 17 C 1.37940 * 119.89980 * 179.97438 * 16 15 13 18 18 F 1.35096 * 119.84921 * 179.97438 * 17 16 15 19 19 C 1.38782 * 120.29877 * 359.97438 * 17 16 15 20 20 C 1.37966 * 120.40222 * 0.03015 * 19 17 16 21 21 C 1.38938 * 120.09093 * 359.69637 * 20 19 17 22 22 N 1.38991 * 120.15178 * 180.27993 * 21 20 19 23 23 C 1.47018 * 111.00031 * 63.90685 * 22 21 20 24 24 C 1.53099 * 109.25750 * 177.60895 * 23 22 21 25 25 O 1.43017 * 109.25913 * 56.84807 * 24 23 22 26 26 C 1.43013 * 113.73991 * 301.33026 * 25 24 23 27 27 C 1.47018 * 111.00122 * 300.27272 * 22 21 20 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 33 33 H 1.07999 * 120.04811 * 359.97438 * 16 15 13 34 34 H 1.07997 * 119.79962 * 180.02562 * 19 17 16 35 35 H 1.08000 * 119.95807 * 179.97438 * 20 19 17 36 36 H 1.08996 * 109.50511 * 297.54239 * 23 22 21 37 37 H 1.09000 * 109.50581 * 57.67760 * 23 22 21 38 38 H 1.09002 * 109.50486 * 296.91641 * 24 23 22 39 39 H 1.08994 * 109.50849 * 176.78634 * 24 23 22 40 40 H 1.09001 * 109.50570 * 298.73413 * 26 25 24 41 41 H 1.08998 * 109.54386 * 178.62978 * 26 25 24 42 42 H 1.08999 * 109.50678 * 302.33213 * 27 22 21 43 43 H 1.09007 * 109.50565 * 62.45668 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1617 2.4117 15 6 2.6380 -0.7134 3.5611 16 6 2.9716 -2.0694 3.5029 17 6 3.4309 -2.7135 4.6329 18 9 3.7526 -4.0244 4.5757 19 6 3.5639 -2.0211 5.8283 20 6 3.2381 -0.6824 5.8997 21 6 2.7794 -0.0159 4.7702 22 7 2.4563 1.3342 4.8394 23 6 3.6424 2.1444 5.1523 24 6 3.2546 3.6255 5.1599 25 8 2.1954 3.8310 6.0986 26 6 1.0242 3.0577 5.8236 27 6 1.3894 1.5709 5.8228 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7089 1.1613 -3.4844 32 1 2.2491 -1.6318 1.1527 33 1 2.8700 -2.6119 2.5747 34 1 3.9246 -2.5334 6.7079 35 1 3.3440 -0.1507 6.8338 36 1 4.0264 1.8638 6.1330 37 1 4.4098 1.9730 4.3975 38 1 2.9209 3.9194 4.1647 39 1 4.1174 4.2262 5.4473 40 1 0.6258 3.3351 4.8477 41 1 0.2734 3.2477 6.5906 42 1 0.5123 0.9808 5.5575 43 1 1.7375 1.2811 6.8143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609344906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:10 Heat of formation + Delta-G solvation = -77.375796 kcal Electronic energy + Delta-G solvation = -27816.048360 eV Core-core repulsion = 23776.431106 eV Total energy + Delta-G solvation = -4039.617254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.00041 -40.63203 -38.96415 -37.79424 -35.53912 -34.66193 -32.51815 -31.41212 -31.22775 -29.92084 -28.68586 -26.44517 -25.25110 -24.10086 -24.03312 -22.59634 -20.98468 -20.38425 -19.49092 -18.31921 -17.34121 -16.73151 -16.44363 -16.16704 -15.71441 -15.34402 -15.26551 -15.14226 -15.08229 -14.98067 -14.43951 -14.15690 -13.99809 -13.90088 -13.13563 -13.07173 -12.70751 -12.61153 -12.30536 -12.11134 -11.69632 -11.60771 -11.47726 -11.39988 -11.08153 -10.94987 -10.71573 -10.62071 -10.29008 -10.23534 -9.75975 -9.23656 -9.14885 -9.02476 -8.66240 -8.55093 -8.25739 -7.84992 -6.12220 -4.21199 0.72215 0.92356 3.03084 3.23823 3.31811 3.34443 3.55172 3.84089 3.94030 4.07161 4.13645 4.36904 4.55397 4.65814 4.84902 4.88307 5.04450 5.06481 5.15876 5.19404 5.21726 5.25622 5.44927 5.51198 5.59678 5.64580 5.76887 5.84797 5.85380 5.90207 5.92841 6.19764 6.53528 6.80879 6.84091 6.98381 7.09882 7.16354 7.26394 7.47238 7.58986 7.70985 7.93128 8.15747 8.68069 8.80327 9.16179 9.46729 10.93735 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.004136 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.864457 B = 6767.873111 C = 8598.735907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.538 3.462 14 O -0.506 6.506 15 C -0.069 4.069 16 C -0.121 4.121 17 C 0.091 3.909 18 F -0.138 7.138 19 C -0.130 4.130 20 C -0.132 4.132 21 C 0.128 3.872 22 N -0.475 5.475 23 C 0.029 3.971 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.028 3.972 28 H 0.090 0.910 29 H 0.015 0.985 30 H 0.025 0.975 31 H 0.263 0.737 32 H 0.385 0.615 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -1.955 18.513 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.322 3.678 14 O -0.382 6.382 15 C -0.073 4.073 16 C -0.141 4.141 17 C 0.071 3.929 18 F -0.117 7.117 19 C -0.150 4.150 20 C -0.152 4.152 21 C 0.033 3.967 22 N -0.196 5.196 23 C -0.097 4.097 24 C -0.012 4.012 25 O -0.307 6.307 26 C -0.012 4.012 27 C -0.099 4.099 28 H 0.108 0.892 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.504 -0.687 18.048 18.398 hybrid contribution 0.780 -1.868 -0.367 2.058 sum 4.284 -2.555 17.681 18.371 Atomic orbital electron populations 1.22069 0.98453 0.99051 1.00889 1.18730 0.90966 0.93965 0.79765 0.93238 1.21257 1.32345 1.13190 0.90354 0.92101 1.24874 0.94812 0.94942 0.99019 1.69914 1.35945 1.22450 1.23741 0.86412 0.78618 0.79547 0.82633 1.19745 1.20888 1.20879 1.46552 1.65308 1.13418 1.10490 1.17827 0.80095 0.87167 0.82724 1.90798 1.48803 1.14450 1.84142 1.20308 0.99674 0.92281 0.95086 1.21417 0.99719 0.94485 0.98459 1.17525 1.01908 0.78574 0.94848 1.91512 1.90513 1.32570 1.97082 1.21062 1.02080 0.94852 0.96990 1.21533 1.00148 0.94394 0.99115 1.18715 0.96613 0.89732 0.91677 1.59406 1.08560 1.02886 1.48711 1.22801 0.92354 0.94505 1.00045 1.22659 0.90379 0.94001 0.94146 1.87931 1.24646 1.65935 1.52227 1.22647 0.87539 0.88700 1.02290 1.22819 0.95523 0.98626 0.92915 0.89188 0.96592 0.95579 0.92652 0.78233 0.83684 0.84592 0.84936 0.94097 0.89442 0.91280 0.88529 0.91360 0.88559 0.89514 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.27 6.72 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.71 -14.70 5.02 -56.00 -0.28 -14.98 16 13 C 0.54 10.73 7.73 -12.52 -0.10 10.64 16 14 O -0.51 -11.59 14.68 5.28 0.08 -11.51 16 15 C -0.07 -1.09 5.89 -104.80 -0.62 -1.71 16 16 C -0.12 -1.64 9.51 -39.12 -0.37 -2.01 16 17 C 0.09 1.11 7.28 -39.49 -0.29 0.82 16 18 F -0.14 -1.72 17.26 2.25 0.04 -1.68 16 19 C -0.13 -1.36 10.00 -39.48 -0.39 -1.76 16 20 C -0.13 -1.45 8.60 -39.42 -0.34 -1.79 16 21 C 0.13 1.80 4.73 -83.58 -0.40 1.40 16 22 N -0.47 -6.80 2.63 -170.56 -0.45 -7.25 16 23 C 0.03 0.37 5.40 -3.71 -0.02 0.35 16 24 C 0.07 0.79 7.01 37.21 0.26 1.05 16 25 O -0.39 -5.02 10.83 -35.23 -0.38 -5.41 16 26 C 0.07 0.78 7.01 37.21 0.26 1.04 16 27 C 0.03 0.34 5.35 -3.71 -0.02 0.32 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.38 6.99 6.57 -40.82 -0.27 6.73 16 33 H 0.15 1.83 6.40 -52.49 -0.34 1.50 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.19 7.02 -52.49 -0.37 0.82 16 36 H 0.04 0.44 7.41 -51.93 -0.38 0.06 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.44 7.19 -51.93 -0.37 0.06 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -30.51 354.43 -8.08 -38.59 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.78 Total: 6.43 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.25 Total: -1.00 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.10 Total: -46.30 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.30 Total: -16.91 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.51 -8.08 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609344906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.786 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds