Wall clock time and date at job start Tue Mar 31 2020 13:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21602 * 120.00487 * 359.97438 * 13 12 2 15 15 C 1.47436 * 119.99704 * 179.97438 * 13 12 2 16 16 C 1.39763 * 120.19558 * 0.02562 * 15 13 12 17 17 C 1.37940 * 119.89980 * 179.97438 * 16 15 13 18 18 F 1.35096 * 119.84921 * 179.97438 * 17 16 15 19 19 C 1.38782 * 120.29877 * 359.97438 * 17 16 15 20 20 C 1.37966 * 120.40222 * 0.03015 * 19 17 16 21 21 C 1.38938 * 120.09093 * 359.69637 * 20 19 17 22 22 N 1.38991 * 120.15178 * 180.27993 * 21 20 19 23 23 C 1.47018 * 111.00031 * 63.90685 * 22 21 20 24 24 C 1.53099 * 109.25750 * 177.60895 * 23 22 21 25 25 O 1.43017 * 109.25913 * 56.84807 * 24 23 22 26 26 C 1.43013 * 113.73991 * 301.33026 * 25 24 23 27 27 C 1.47018 * 111.00122 * 300.27272 * 22 21 20 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 33 33 H 1.07999 * 120.04811 * 359.97438 * 16 15 13 34 34 H 1.07997 * 119.79962 * 180.02562 * 19 17 16 35 35 H 1.08000 * 119.95807 * 179.97438 * 20 19 17 36 36 H 1.08996 * 109.50511 * 297.54239 * 23 22 21 37 37 H 1.09000 * 109.50581 * 57.67760 * 23 22 21 38 38 H 1.09002 * 109.50486 * 296.91641 * 24 23 22 39 39 H 1.08994 * 109.50849 * 176.78634 * 24 23 22 40 40 H 1.09001 * 109.50570 * 298.73413 * 26 25 24 41 41 H 1.08998 * 109.54386 * 178.62978 * 26 25 24 42 42 H 1.08999 * 109.50678 * 302.33213 * 27 22 21 43 43 H 1.09007 * 109.50565 * 62.45668 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1617 2.4117 15 6 2.6380 -0.7134 3.5611 16 6 2.9716 -2.0694 3.5029 17 6 3.4309 -2.7135 4.6329 18 9 3.7526 -4.0244 4.5757 19 6 3.5639 -2.0211 5.8283 20 6 3.2381 -0.6824 5.8997 21 6 2.7794 -0.0159 4.7702 22 7 2.4563 1.3342 4.8394 23 6 3.6424 2.1444 5.1523 24 6 3.2546 3.6255 5.1599 25 8 2.1954 3.8310 6.0986 26 6 1.0242 3.0577 5.8236 27 6 1.3894 1.5709 5.8228 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7089 1.1613 -3.4844 32 1 2.2491 -1.6318 1.1527 33 1 2.8700 -2.6119 2.5747 34 1 3.9246 -2.5334 6.7079 35 1 3.3440 -0.1507 6.8338 36 1 4.0264 1.8638 6.1330 37 1 4.4098 1.9730 4.3975 38 1 2.9209 3.9194 4.1647 39 1 4.1174 4.2262 5.4473 40 1 0.6258 3.3351 4.8477 41 1 0.2734 3.2477 6.5906 42 1 0.5123 0.9808 5.5575 43 1 1.7375 1.2811 6.8143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609344906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:09 Heat of formation + Delta-G solvation = -96.831641 kcal Electronic energy + Delta-G solvation = -27816.892029 eV Core-core repulsion = 23776.431106 eV Total energy + Delta-G solvation = -4040.460923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95255 -41.71915 -40.25997 -39.05183 -36.72248 -36.37711 -34.32841 -32.70456 -32.17827 -30.91139 -30.47646 -27.49660 -27.32024 -25.25502 -25.01248 -23.80070 -22.51294 -21.43381 -21.08286 -19.70216 -18.38365 -18.06131 -17.83890 -17.15573 -16.99026 -16.72948 -16.67557 -16.24501 -16.14646 -15.95373 -15.85157 -15.50916 -15.39723 -14.97436 -14.62711 -14.38933 -14.01462 -13.76994 -13.67453 -13.51133 -13.12430 -12.96819 -12.83556 -12.71007 -12.59687 -12.43583 -12.34835 -12.27018 -12.11773 -11.59797 -11.08456 -10.81772 -10.70110 -10.57277 -10.25511 -9.73125 -9.58957 -9.27881 -8.17447 -6.34659 -0.33537 -0.03859 1.43777 1.44831 1.56785 1.89686 2.33992 2.55864 2.60615 2.70025 2.91018 3.12316 3.13411 3.61473 3.71836 3.90521 3.92068 4.08915 4.11122 4.13033 4.23501 4.31208 4.40347 4.58329 4.60144 4.67033 4.77295 4.78326 4.85634 4.89946 4.92765 4.94878 4.97133 5.10786 5.20689 5.45357 5.58659 5.62494 5.70718 5.87263 5.92541 6.11013 6.12669 6.30235 6.73136 7.01284 7.33224 7.60060 8.89007 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.004136 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.864457 B = 6767.873111 C = 8598.735907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.276 3.724 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.537 3.463 14 O -0.545 6.545 15 C -0.098 4.098 16 C -0.120 4.120 17 C 0.086 3.914 18 F -0.138 7.138 19 C -0.105 4.105 20 C -0.120 4.120 21 C 0.126 3.874 22 N -0.509 5.509 23 C 0.033 3.967 24 C 0.066 3.934 25 O -0.393 6.393 26 C 0.065 3.935 27 C 0.031 3.969 28 H 0.066 0.934 29 H 0.012 0.988 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.398 0.602 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.124 0.876 40 H 0.039 0.961 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 -3.945 20.925 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.172 3.828 3 H 0.018 0.982 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.359 5.359 13 C 0.323 3.677 14 O -0.424 6.424 15 C -0.103 4.103 16 C -0.140 4.140 17 C 0.067 3.933 18 F -0.117 7.117 19 C -0.124 4.124 20 C -0.140 4.140 21 C 0.031 3.969 22 N -0.231 5.231 23 C -0.093 4.093 24 C -0.011 4.011 25 O -0.312 6.312 26 C -0.012 4.012 27 C -0.095 4.095 28 H 0.085 0.915 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.164 0.836 34 H 0.191 0.809 35 H 0.181 0.819 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.057 0.943 41 H 0.143 0.857 42 H 0.096 0.904 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.862 -2.709 20.487 21.230 hybrid contribution 0.369 -1.221 -1.035 1.643 sum 5.232 -3.930 19.452 20.523 Atomic orbital electron populations 1.21873 0.98346 0.99237 0.99513 1.18295 0.90986 0.91877 0.81593 0.98179 1.21565 1.32509 1.13482 0.90897 0.91141 1.25770 0.94863 0.95564 1.02216 1.70059 1.37012 1.23888 1.24514 0.85313 0.78115 0.78519 0.78483 1.18499 1.20380 1.20903 1.46301 1.65793 1.13966 1.09837 1.18453 0.78872 0.86856 0.83480 1.90771 1.50416 1.16265 1.84918 1.19904 1.03140 0.93284 0.93948 1.21379 0.99601 0.93612 0.99427 1.17564 1.02067 0.78641 0.95031 1.91519 1.90507 1.32537 1.97098 1.21457 0.99274 0.94406 0.97257 1.21735 0.98815 0.94557 0.98925 1.18868 0.96385 0.89739 0.91946 1.59280 1.09774 1.03544 1.50458 1.22785 0.91540 0.94134 1.00861 1.22708 0.91039 0.94640 0.92736 1.87921 1.24904 1.66266 1.52100 1.22723 0.87855 0.88821 1.01795 1.22819 0.94794 0.98308 0.93586 0.91500 0.96915 0.94391 0.92555 0.76683 0.83571 0.80874 0.81905 0.91495 0.90678 0.94340 0.85780 0.94301 0.85668 0.90356 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.28 14.54 2.56 44.25 0.11 14.65 16 3 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 4 C -0.55 -29.29 8.73 25.60 0.22 -29.07 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.86 11.32 21.45 0.24 -52.62 16 8 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 9 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.71 -30.53 5.02 -449.35 -2.26 -32.79 16 13 C 0.54 22.35 7.73 86.67 0.67 23.02 16 14 O -0.55 -26.59 14.68 -4.04 -0.06 -26.65 16 15 C -0.10 -3.10 5.89 -19.98 -0.12 -3.22 16 16 C -0.12 -3.13 9.51 22.57 0.21 -2.92 16 17 C 0.09 1.86 7.28 22.33 0.16 2.02 16 18 F -0.14 -3.03 17.26 44.97 0.78 -2.25 16 19 C -0.10 -1.71 10.00 22.34 0.22 -1.49 16 20 C -0.12 -2.17 8.60 22.37 0.19 -1.98 16 21 C 0.13 3.36 4.73 38.68 0.18 3.54 16 22 N -0.51 -14.36 2.63 -693.54 -1.82 -16.19 16 23 C 0.03 0.78 5.40 86.31 0.47 1.25 16 24 C 0.07 1.57 7.01 72.02 0.50 2.08 16 25 O -0.39 -9.79 10.83 -148.98 -1.61 -11.40 16 26 C 0.06 1.52 7.01 72.01 0.50 2.02 16 27 C 0.03 0.72 5.35 86.31 0.46 1.18 16 28 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.40 14.76 6.57 -92.71 -0.61 14.15 16 33 H 0.15 3.62 6.40 -2.91 -0.02 3.61 16 34 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.16 2.01 7.02 -2.91 -0.02 1.99 16 36 H 0.07 1.23 7.41 -2.39 -0.02 1.21 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 1.19 7.19 -2.38 -0.02 1.17 16 Total: -1.00 -69.29 354.43 2.65 -66.64 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.43 Total: 24.58 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 4.92 Total: 6.32 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -3.84 Total: -101.59 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.67 Total: -38.05 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.29 2.65 -66.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609344906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.190 kcal (2) G-P(sol) polarization free energy of solvation -69.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds