Wall clock time and date at job start Tue Mar 31 2020 13:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50701 * 109.47122 * 119.99701 * 2 1 3 5 5 O 1.21282 * 120.00299 * 120.00133 * 4 2 1 6 6 N 1.34784 * 119.99878 * 300.00260 * 4 2 1 7 7 C 1.46500 * 120.00009 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.21319 * 33.06426 * 7 6 4 9 9 C 1.50127 * 110.24739 * 154.99582 * 7 6 4 10 10 C 1.54838 * 110.77679 * 216.67491 * 9 7 6 11 11 C 1.54858 * 110.16480 * 321.06859 * 10 9 7 12 12 N 1.43433 * 116.10606 * 318.71617 * 11 10 9 13 13 C 1.36936 * 120.53667 * 271.55436 * 12 11 10 14 14 H 1.08001 * 120.00351 * 336.67773 * 13 12 11 15 15 C 1.38820 * 119.99970 * 156.67888 * 13 12 11 16 16 N 1.31622 * 119.99948 * 340.40524 * 15 13 12 17 17 Si 1.86797 * 119.99904 * 160.40470 * 15 13 12 18 18 H 1.48503 * 109.46892 * 60.00079 * 17 15 13 19 19 H 1.48497 * 109.46960 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47158 * 300.00299 * 17 15 13 21 21 C 1.50165 * 118.92664 * 91.52620 * 12 11 10 22 22 C 1.46247 * 107.53420 * 289.59665 * 21 12 11 23 23 C 1.50696 * 109.47420 * 239.99467 * 2 1 3 24 24 C 1.33390 * 125.20328 * 119.71800 * 23 2 1 25 25 C 1.38430 * 114.91914 * 179.86058 * 24 23 2 26 26 C 1.33388 * 114.92212 * 0.42942 * 25 24 23 27 27 S 1.75881 * 109.59302 * 359.77540 * 26 25 24 28 28 H 1.09004 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47477 * 300.00729 * 1 2 3 30 30 H 1.09005 * 109.46912 * 60.00499 * 1 2 3 31 31 H 0.96998 * 119.99609 * 359.97438 * 6 4 2 32 32 H 1.09000 * 109.21076 * 336.99993 * 9 7 6 33 33 H 1.09008 * 109.20543 * 96.35372 * 9 7 6 34 34 H 1.08995 * 109.36199 * 81.32249 * 10 9 7 35 35 H 1.09002 * 109.35789 * 200.90460 * 10 9 7 36 36 H 1.09005 * 108.17771 * 196.96598 * 11 10 9 37 37 H 1.09002 * 107.95800 * 80.29225 * 11 10 9 38 38 H 0.96992 * 119.99546 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.85079 * 170.08843 * 21 12 11 40 40 H 1.09000 * 109.89836 * 49.12781 * 21 12 11 41 41 H 1.09004 * 108.51677 * 297.16134 * 22 21 12 42 42 H 1.09000 * 108.52139 * 179.64707 * 22 21 12 43 43 H 1.07994 * 122.54094 * 0.02562 * 24 23 2 44 44 H 1.07998 * 122.53756 * 180.20325 * 25 24 23 45 45 H 1.08000 * 125.20464 * 179.74440 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1954 -0.9400 3.6509 8 1 3.1808 -1.3664 3.4634 9 6 2.2526 0.0100 4.8119 10 6 3.4821 -0.2874 5.7048 11 6 3.6989 -1.8162 5.8228 12 7 2.5161 -2.6104 5.9888 13 6 2.0190 -2.8654 7.2389 14 1 2.6694 -2.8138 8.0996 15 6 0.6790 -3.1903 7.4001 16 7 -0.1893 -2.8882 6.4582 17 14 0.1083 -4.0564 8.9537 18 1 0.4167 -3.2097 10.1341 19 1 -1.3565 -4.2890 8.8810 20 1 0.8111 -5.3583 9.0812 21 6 1.8314 -3.1572 4.7693 22 6 1.2152 -2.0315 4.0680 23 6 2.0323 -0.7105 -1.2303 24 6 2.7981 -0.1632 -2.1755 25 6 3.1392 -1.0126 -3.2141 26 6 2.6430 -2.2469 -3.1168 27 16 1.6923 -2.3860 -1.6436 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.1492 0.5390 2.5435 32 1 2.3204 1.0312 4.4367 33 1 1.3444 -0.0943 5.4057 34 1 4.3678 0.1707 5.2645 35 1 3.3173 0.1311 6.6977 36 1 4.3550 -2.0020 6.6733 37 1 4.2110 -2.1535 4.9217 38 1 -1.1254 -3.1156 6.5707 39 1 1.0648 -3.8734 5.0650 40 1 2.5607 -3.6426 4.1207 41 1 0.4608 -1.5893 4.7188 42 1 0.7180 -2.4102 3.1749 43 1 3.1292 0.8638 -2.1324 44 1 3.7570 -0.6984 -4.0423 45 1 2.8005 -3.0395 -3.8333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052706412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:55 Heat of formation + Delta-G solvation = 22.272320 kcal Electronic energy + Delta-G solvation = -25746.448926 eV Core-core repulsion = 22277.365915 eV Total energy + Delta-G solvation = -3469.083011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.93807 -38.10067 -37.33834 -34.54644 -33.97290 -32.39817 -30.85225 -30.37988 -28.57429 -26.14755 -24.97315 -24.02365 -23.07397 -22.78864 -20.17244 -19.95873 -19.40006 -19.15387 -17.26855 -16.65806 -16.50384 -15.71203 -15.41200 -14.92252 -14.75607 -14.07596 -13.84863 -13.73719 -13.64411 -13.26717 -12.99159 -12.87642 -12.72305 -12.29771 -12.23214 -12.03450 -11.81459 -11.68750 -11.56286 -11.37490 -11.19909 -10.76846 -10.72653 -10.59037 -10.33498 -10.17426 -9.97901 -9.78586 -9.50421 -9.45769 -9.23983 -8.66078 -8.62493 -8.33604 -8.28035 -6.69252 -5.77083 -3.15777 1.00302 1.69622 2.09668 2.70339 2.89248 3.39806 3.45804 3.48291 3.53267 4.43267 4.52900 4.79838 4.92980 5.02926 5.15015 5.35476 5.41569 5.43991 5.48696 5.55983 5.62468 5.65280 5.71790 5.79402 5.93852 6.06639 6.15304 6.25898 6.29739 6.33871 6.45278 6.50489 6.57172 6.68849 6.87928 6.91759 6.95089 7.09984 7.14918 7.30675 7.61262 7.75865 7.85661 7.98456 8.45139 8.53328 9.21424 9.89404 10.43190 11.30103 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.003155 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.137054 B = 8873.002296 C = 9219.576033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 H 0.110 0.890 4 C 0.510 3.490 5 O -0.527 6.527 6 N -0.717 5.717 7 C 0.146 3.854 8 H 0.085 0.915 9 C -0.112 4.112 10 C -0.140 4.140 11 C 0.154 3.846 12 N -0.588 5.588 13 C -0.247 4.247 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.286 1.286 21 C 0.169 3.831 22 C -0.131 4.131 23 C -0.153 4.153 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.230 4.230 27 S 0.148 5.852 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.393 0.607 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.252 0.748 39 H 0.090 0.910 40 H 0.009 0.991 41 H 0.102 0.898 42 H 0.028 0.972 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 8.296 -16.853 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 H 0.128 0.872 4 C 0.294 3.706 5 O -0.403 6.403 6 N -0.367 5.367 7 C 0.043 3.957 8 H 0.103 0.897 9 C -0.150 4.150 10 C -0.181 4.181 11 C 0.025 3.975 12 N -0.309 5.309 13 C -0.377 4.377 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.730 3.270 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.212 1.212 21 C 0.045 3.955 22 C -0.171 4.171 23 C -0.271 4.271 24 C -0.175 4.175 25 C -0.169 4.169 26 C -0.366 4.366 27 S 0.413 5.587 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.227 0.773 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.027 0.973 41 H 0.120 0.880 42 H 0.047 0.953 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.339 6.313 -16.233 17.469 hybrid contribution 0.184 1.289 0.150 1.311 sum 1.522 7.602 -16.084 17.855 Atomic orbital electron populations 1.21847 0.91764 1.03405 1.03099 1.19857 0.97595 0.99742 0.89465 0.87232 1.20294 0.80847 0.84979 0.84458 1.90739 1.37374 1.25697 1.86442 1.46235 1.53135 1.31550 1.05797 1.20512 0.98956 0.93945 0.82328 0.89720 1.21702 1.01137 0.96218 0.95985 1.22821 0.95723 1.01053 0.98528 1.20422 0.90178 0.88814 0.98072 1.44251 1.29029 1.54613 1.03038 1.19182 0.91897 1.41367 0.85215 0.91584 1.24878 0.95580 1.01601 0.97553 1.69954 1.01642 1.48714 1.34319 0.86408 0.77240 0.80180 0.83165 1.21146 1.21789 1.21223 1.20087 0.94994 0.94873 0.85529 1.21321 0.99165 0.97486 0.99080 1.23952 1.05522 0.97719 0.99919 1.20017 1.01085 1.01404 0.95000 1.20032 1.03176 0.93207 1.00453 1.25708 1.06811 1.01485 1.02568 1.84446 1.49307 1.09504 1.15428 0.91700 0.91117 0.91136 0.77326 0.94167 0.90116 0.93758 0.92708 0.94882 0.95301 0.93790 0.89156 0.97315 0.88030 0.95326 0.84692 0.84723 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.01 37.15 0.33 -1.06 16 2 C -0.04 -0.50 3.10 -92.93 -0.29 -0.79 16 3 H 0.11 0.99 8.09 -51.93 -0.42 0.57 16 4 C 0.51 7.93 7.12 -10.98 -0.08 7.85 16 5 O -0.53 -10.35 14.90 5.56 0.08 -10.27 16 6 N -0.72 -10.75 4.84 -55.45 -0.27 -11.02 16 7 C 0.15 2.70 2.23 -69.61 -0.16 2.54 16 8 H 0.08 1.76 5.71 -51.93 -0.30 1.46 16 9 C -0.11 -2.02 5.30 -27.19 -0.14 -2.17 16 10 C -0.14 -2.58 6.40 -24.78 -0.16 -2.74 16 11 C 0.15 3.28 5.18 -4.69 -0.02 3.25 16 12 N -0.59 -14.45 2.60 -175.10 -0.46 -14.91 16 13 C -0.25 -6.61 9.63 -15.06 -0.14 -6.75 16 14 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 15 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 16 N -0.90 -24.50 9.43 55.49 0.52 -23.97 16 17 Si 0.90 21.39 29.60 -169.99 -5.03 16.36 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.17 4.08 5.25 -5.20 -0.03 4.05 16 22 C -0.13 -2.84 4.74 -30.19 -0.14 -2.98 16 23 C -0.15 -1.93 4.60 -36.00 -0.17 -2.09 16 24 C -0.14 -1.63 10.01 -41.21 -0.41 -2.04 16 25 C -0.14 -1.46 10.18 -41.21 -0.42 -1.88 16 26 C -0.23 -2.54 11.23 29.04 0.33 -2.22 16 27 S 0.15 1.94 22.18 -107.50 -2.38 -0.44 16 28 H 0.06 0.73 8.00 -51.93 -0.42 0.31 16 29 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.39 4.72 7.94 -40.82 -0.32 4.39 16 32 H 0.04 0.61 7.85 -51.93 -0.41 0.20 16 33 H 0.08 1.69 6.83 -51.92 -0.35 1.34 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 37 H 0.03 0.60 6.88 -51.93 -0.36 0.24 16 38 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 40 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 41 H 0.10 2.45 5.29 -51.93 -0.27 2.18 16 42 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 43 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -30.16 362.89 -10.55 -40.71 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.90 Total: 5.15 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.59 Total: -7.07 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.20 Total: -49.90 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.38 Total: -0.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.16 -10.55 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052706412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.979 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds