Wall clock time and date at job start Tue Mar 31 2020 13:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47170 * 2 1 4 4 C 1.50701 * 109.47122 * 119.99701 * 2 1 3 5 5 O 1.21282 * 120.00299 * 120.00133 * 4 2 1 6 6 N 1.34784 * 119.99878 * 300.00260 * 4 2 1 7 7 C 1.46500 * 120.00009 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.21319 * 33.06426 * 7 6 4 9 9 C 1.50127 * 110.24739 * 154.99582 * 7 6 4 10 10 C 1.54838 * 110.77679 * 216.67491 * 9 7 6 11 11 C 1.54858 * 110.16480 * 321.06859 * 10 9 7 12 12 N 1.43433 * 116.10606 * 318.71617 * 11 10 9 13 13 C 1.36936 * 120.53667 * 271.55436 * 12 11 10 14 14 H 1.08001 * 120.00351 * 336.67773 * 13 12 11 15 15 C 1.38820 * 119.99970 * 156.67888 * 13 12 11 16 16 N 1.31622 * 119.99948 * 340.40524 * 15 13 12 17 17 Si 1.86797 * 119.99904 * 160.40470 * 15 13 12 18 18 H 1.48503 * 109.46892 * 60.00079 * 17 15 13 19 19 H 1.48497 * 109.46960 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47158 * 300.00299 * 17 15 13 21 21 C 1.50165 * 118.92664 * 91.52620 * 12 11 10 22 22 C 1.46247 * 107.53420 * 289.59665 * 21 12 11 23 23 C 1.50696 * 109.47420 * 239.99467 * 2 1 3 24 24 C 1.33390 * 125.20328 * 119.71800 * 23 2 1 25 25 C 1.38430 * 114.91914 * 179.86058 * 24 23 2 26 26 C 1.33388 * 114.92212 * 0.42942 * 25 24 23 27 27 S 1.75881 * 109.59302 * 359.77540 * 26 25 24 28 28 H 1.09004 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47477 * 300.00729 * 1 2 3 30 30 H 1.09005 * 109.46912 * 60.00499 * 1 2 3 31 31 H 0.96998 * 119.99609 * 359.97438 * 6 4 2 32 32 H 1.09000 * 109.21076 * 336.99993 * 9 7 6 33 33 H 1.09008 * 109.20543 * 96.35372 * 9 7 6 34 34 H 1.08995 * 109.36199 * 81.32249 * 10 9 7 35 35 H 1.09002 * 109.35789 * 200.90460 * 10 9 7 36 36 H 1.09005 * 108.17771 * 196.96598 * 11 10 9 37 37 H 1.09002 * 107.95800 * 80.29225 * 11 10 9 38 38 H 0.96992 * 119.99546 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.85079 * 170.08843 * 21 12 11 40 40 H 1.09000 * 109.89836 * 49.12781 * 21 12 11 41 41 H 1.09004 * 108.51677 * 297.16134 * 22 21 12 42 42 H 1.09000 * 108.52139 * 179.64707 * 22 21 12 43 43 H 1.07994 * 122.54094 * 0.02562 * 24 23 2 44 44 H 1.07998 * 122.53756 * 180.20325 * 25 24 23 45 45 H 1.08000 * 125.20464 * 179.74440 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1954 -0.9400 3.6509 8 1 3.1808 -1.3664 3.4634 9 6 2.2526 0.0100 4.8119 10 6 3.4821 -0.2874 5.7048 11 6 3.6989 -1.8162 5.8228 12 7 2.5161 -2.6104 5.9888 13 6 2.0190 -2.8654 7.2389 14 1 2.6694 -2.8138 8.0996 15 6 0.6790 -3.1903 7.4001 16 7 -0.1893 -2.8882 6.4582 17 14 0.1083 -4.0564 8.9537 18 1 0.4167 -3.2097 10.1341 19 1 -1.3565 -4.2890 8.8810 20 1 0.8111 -5.3583 9.0812 21 6 1.8314 -3.1572 4.7693 22 6 1.2152 -2.0315 4.0680 23 6 2.0323 -0.7105 -1.2303 24 6 2.7981 -0.1632 -2.1755 25 6 3.1392 -1.0126 -3.2141 26 6 2.6430 -2.2469 -3.1168 27 16 1.6923 -2.3860 -1.6436 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.1492 0.5390 2.5435 32 1 2.3204 1.0312 4.4367 33 1 1.3444 -0.0943 5.4057 34 1 4.3678 0.1707 5.2645 35 1 3.3173 0.1311 6.6977 36 1 4.3550 -2.0020 6.6733 37 1 4.2110 -2.1535 4.9217 38 1 -1.1254 -3.1156 6.5707 39 1 1.0648 -3.8734 5.0650 40 1 2.5607 -3.6426 4.1207 41 1 0.4608 -1.5893 4.7188 42 1 0.7180 -2.4102 3.1749 43 1 3.1292 0.8638 -2.1324 44 1 3.7570 -0.6984 -4.0423 45 1 2.8005 -3.0395 -3.8333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052706412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:54 Heat of formation + Delta-G solvation = 5.456007 kcal Electronic energy + Delta-G solvation = -25747.178136 eV Core-core repulsion = 22277.365915 eV Total energy + Delta-G solvation = -3469.812221 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23246 -39.49155 -38.45863 -36.17318 -34.99779 -34.06961 -32.62129 -32.08721 -29.44439 -27.92519 -26.10569 -25.32887 -24.92081 -23.88418 -21.82296 -21.28948 -20.74019 -20.22990 -18.59932 -18.34023 -17.64546 -16.95698 -16.83417 -16.42246 -15.97697 -15.66235 -15.53079 -15.33173 -14.92578 -14.66956 -14.30754 -13.97472 -13.66491 -13.57161 -13.48139 -13.24021 -13.16443 -13.10289 -13.03151 -12.62047 -12.59622 -12.54548 -12.40646 -12.07361 -11.86019 -11.71489 -11.66188 -11.47836 -11.19533 -11.02829 -10.74105 -10.49725 -9.88495 -9.53944 -9.28333 -8.67066 -7.81614 -5.22564 0.13115 0.80857 1.23128 1.48323 1.51660 1.57055 1.69146 1.85821 2.35039 2.55065 3.31613 3.54080 3.58259 3.82853 4.01983 4.10118 4.14887 4.25856 4.27873 4.33023 4.54183 4.63176 4.67520 4.68341 4.73084 4.82172 4.86181 4.87226 4.94140 5.08788 5.18690 5.21376 5.23530 5.25068 5.32935 5.38073 5.41648 5.53798 5.63597 5.65867 5.69731 5.75106 6.07569 6.42312 6.66008 7.17182 7.34582 7.90156 8.42980 9.22912 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.003155 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.137054 B = 8873.002296 C = 9219.576033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 H 0.145 0.855 4 C 0.507 3.493 5 O -0.572 6.572 6 N -0.707 5.707 7 C 0.162 3.838 8 H 0.067 0.933 9 C -0.103 4.103 10 C -0.132 4.132 11 C 0.148 3.852 12 N -0.600 5.600 13 C -0.262 4.262 14 H 0.064 0.936 15 C -0.041 4.041 16 N -0.916 5.916 17 Si 0.958 3.042 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.287 1.287 21 C 0.174 3.826 22 C -0.114 4.114 23 C -0.168 4.168 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.226 4.226 27 S 0.074 5.926 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.411 0.589 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.247 0.753 39 H 0.058 0.942 40 H 0.004 0.996 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 10.902 -18.045 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.056 4.056 3 H 0.163 0.837 4 C 0.293 3.707 5 O -0.450 6.450 6 N -0.359 5.359 7 C 0.057 3.943 8 H 0.085 0.915 9 C -0.141 4.141 10 C -0.173 4.173 11 C 0.020 3.980 12 N -0.322 5.322 13 C -0.392 4.392 14 H 0.081 0.919 15 C -0.237 4.237 16 N -0.561 5.561 17 Si 0.787 3.213 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.214 1.214 21 C 0.050 3.950 22 C -0.154 4.154 23 C -0.286 4.286 24 C -0.171 4.171 25 C -0.171 4.171 26 C -0.361 4.361 27 S 0.339 5.661 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.248 0.752 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.022 0.978 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.180 0.820 44 H 0.182 0.818 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.118 8.965 -17.432 19.716 hybrid contribution 0.018 0.440 0.450 0.629 sum 2.136 9.404 -16.982 19.529 Atomic orbital electron populations 1.21862 0.90525 1.02529 1.04892 1.19894 0.98462 1.00564 0.86677 0.83710 1.21079 0.79791 0.84409 0.85430 1.90724 1.39426 1.27764 1.87115 1.46036 1.53239 1.31809 1.04781 1.20056 0.96947 0.93280 0.83976 0.91536 1.21546 0.99415 0.98083 0.95077 1.22710 0.97277 0.98471 0.98862 1.20555 0.88729 0.90616 0.98120 1.44302 1.29752 1.55796 1.02380 1.19381 0.92103 1.41747 0.85952 0.91850 1.25507 0.95737 1.02285 1.00153 1.70099 1.01377 1.49105 1.35556 0.85496 0.76336 0.78975 0.80488 1.20440 1.22088 1.21397 1.19902 0.94064 0.95242 0.85765 1.21081 0.99140 0.97528 0.97655 1.24111 1.06805 0.96740 1.00956 1.20423 0.99608 1.02677 0.94342 1.20438 1.02882 0.92767 1.01052 1.25966 1.06068 1.02544 1.01541 1.84706 1.51355 1.11993 1.18057 0.93953 0.89716 0.88917 0.75191 0.90379 0.93217 0.90630 0.93052 0.94939 0.95104 0.94347 0.92333 0.97809 0.90234 0.96445 0.81957 0.81825 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.01 71.98 0.65 -1.81 16 2 C -0.03 -0.69 3.10 -12.29 -0.04 -0.73 16 3 H 0.15 1.99 8.09 -2.39 -0.02 1.97 16 4 C 0.51 15.19 7.12 87.66 0.62 15.81 16 5 O -0.57 -22.63 14.90 -3.04 -0.05 -22.67 16 6 N -0.71 -20.11 4.84 -447.71 -2.17 -22.28 16 7 C 0.16 5.91 2.23 43.91 0.10 6.01 16 8 H 0.07 2.74 5.71 -2.39 -0.01 2.72 16 9 C -0.10 -3.55 5.30 30.30 0.16 -3.39 16 10 C -0.13 -4.65 6.40 31.86 0.20 -4.45 16 11 C 0.15 6.24 5.18 87.58 0.45 6.69 16 12 N -0.60 -30.12 2.60 -707.91 -1.84 -31.96 16 13 C -0.26 -14.24 9.63 84.04 0.81 -13.43 16 14 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 15 C -0.04 -2.22 4.91 84.86 0.42 -1.80 16 16 N -0.92 -51.14 9.43 21.65 0.20 -50.94 16 17 Si 0.96 44.59 29.60 68.60 2.03 46.62 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 C 0.17 8.76 5.25 83.58 0.44 9.20 16 22 C -0.11 -5.10 4.74 28.36 0.13 -4.96 16 23 C -0.17 -3.97 4.60 24.59 0.11 -3.86 16 24 C -0.14 -2.73 10.01 21.22 0.21 -2.52 16 25 C -0.14 -2.61 10.18 21.22 0.22 -2.40 16 26 C -0.23 -4.70 11.23 66.72 0.75 -3.95 16 27 S 0.07 1.98 22.18 -56.49 -1.25 0.73 16 28 H 0.04 0.94 8.00 -2.39 -0.02 0.92 16 29 H 0.08 1.22 7.56 -2.39 -0.02 1.21 16 30 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.41 8.75 7.94 -92.71 -0.74 8.01 16 32 H 0.08 2.10 7.85 -2.39 -0.02 2.08 16 33 H 0.05 2.05 6.83 -2.38 -0.02 2.04 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.03 1.36 7.99 -2.38 -0.02 1.34 16 37 H 0.03 1.27 6.88 -2.39 -0.02 1.26 16 38 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 39 H 0.06 3.29 6.05 -2.39 -0.01 3.28 16 40 H 0.00 0.19 8.13 -2.39 -0.02 0.17 16 41 H 0.08 3.95 5.29 -2.38 -0.01 3.94 16 42 H 0.02 0.78 8.02 -2.39 -0.02 0.76 16 43 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 44 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -67.93 362.89 2.42 -65.51 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.26 Total: 20.57 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.24 Total: -5.57 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.81 Total: -105.18 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.25 Total: 0.73 kcal Total: -67.93 2.42 -65.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052706412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.964 kcal (2) G-P(sol) polarization free energy of solvation -67.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds