Wall clock time and date at job start Tue Mar 31 2020 13:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46816 * 2 1 4 4 C 1.52996 * 109.46902 * 239.99899 * 2 1 3 5 5 N 1.46505 * 109.47161 * 184.99878 * 4 2 1 6 6 C 1.34768 * 119.99960 * 180.02562 * 5 4 2 7 7 O 1.21703 * 120.00559 * 359.97438 * 6 5 4 8 8 C 1.46588 * 119.99689 * 180.02562 * 6 5 4 9 9 C 1.36277 * 125.48991 * 179.97438 * 8 6 5 10 10 C 1.38437 * 113.81510 * 180.02562 * 9 8 6 11 11 C 1.33812 * 114.17235 * 359.66695 * 10 9 8 12 12 S 1.70755 * 111.45287 * 0.46444 * 11 10 9 13 13 C 1.52630 * 124.26521 * 180.51108 * 11 10 9 14 14 C 1.53116 * 107.66735 * 293.46864 * 13 11 10 15 15 C 1.51152 * 111.12111 * 80.63823 * 14 13 11 16 16 C 1.50972 * 115.84229 * 288.24662 * 15 14 13 17 17 C 1.52922 * 111.54530 * 72.35750 * 16 15 14 18 18 N 1.46502 * 109.46981 * 120.00283 * 2 1 3 19 19 C 1.36935 * 119.99512 * 274.99637 * 18 2 1 20 20 H 1.08003 * 120.00480 * 0.02562 * 19 18 2 21 21 C 1.38810 * 119.99833 * 180.02562 * 19 18 2 22 22 N 1.31622 * 120.00171 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00270 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47507 * 89.99845 * 23 21 19 25 25 H 1.48499 * 109.47500 * 210.00173 * 23 21 19 26 26 H 1.48504 * 109.46788 * 329.99948 * 23 21 19 27 27 H 1.08996 * 109.47096 * 299.99923 * 1 2 3 28 28 H 1.08997 * 109.46902 * 60.00059 * 1 2 3 29 29 H 1.08999 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47377 * 65.00257 * 4 2 1 31 31 H 1.08999 * 109.47310 * 304.99653 * 4 2 1 32 32 H 0.97000 * 119.99666 * 0.02562 * 5 4 2 33 33 H 1.08000 * 123.08879 * 0.02562 * 9 8 6 34 34 H 1.09002 * 109.83034 * 53.03099 * 13 11 10 35 35 H 1.09002 * 109.83060 * 173.90711 * 13 11 10 36 36 H 1.08999 * 109.13601 * 201.16529 * 14 13 11 37 37 H 1.08998 * 109.14143 * 320.29270 * 14 13 11 38 38 H 1.09006 * 108.19098 * 166.59481 * 15 14 13 39 39 H 1.08997 * 108.18677 * 49.90602 * 15 14 13 40 40 H 1.08999 * 109.06710 * 311.82509 * 16 15 14 41 41 H 1.09001 * 109.06367 * 192.88390 * 16 15 14 42 42 H 1.08999 * 109.82671 * 159.23489 * 17 16 15 43 43 H 1.09007 * 109.82824 * 38.30833 * 17 16 15 44 44 H 0.96999 * 120.00235 * 95.00311 * 18 2 1 45 45 H 0.96999 * 120.00078 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1912 7 8 3.5679 -1.8849 -3.1432 8 6 5.6339 -1.5339 -2.1322 9 6 6.4237 -2.1174 -3.0771 10 6 7.7745 -2.0827 -2.7757 11 6 8.0620 -1.4779 -1.6172 12 16 6.6488 -0.9282 -0.8321 13 6 9.4749 -1.3009 -1.0677 14 6 10.0195 -2.6914 -0.7295 15 6 10.5312 -3.3919 -1.9673 16 6 9.4769 -3.8653 -2.9387 17 6 8.8392 -2.6956 -3.6895 18 7 2.0184 -0.6907 1.1962 19 6 2.1492 -0.0075 2.3757 20 1 1.8920 1.0403 2.4243 21 6 2.6123 -0.6617 3.5089 22 7 2.9263 -1.9386 3.4497 23 14 2.7901 0.2699 5.1183 24 1 1.5225 0.1778 5.8863 25 1 3.8952 -0.3226 5.9139 26 1 3.0941 1.6955 4.8339 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7517 -0.1583 -2.1370 31 1 1.6054 -1.7198 -1.2951 32 1 3.9824 -0.4628 -0.4316 33 1 6.0319 -2.5657 -3.9782 34 1 10.1075 -0.8288 -1.8194 35 1 9.4475 -0.6856 -0.1684 36 1 10.8332 -2.5914 -0.0111 37 1 9.2234 -3.2887 -0.2852 38 1 11.1165 -4.2558 -1.6520 39 1 11.1977 -2.7089 -2.4938 40 1 8.7022 -4.4011 -2.3902 41 1 9.9351 -4.5431 -3.6589 42 1 8.3756 -3.0547 -4.6083 43 1 9.5982 -1.9494 -3.9247 44 1 2.2491 -1.6318 1.1526 45 1 3.2503 -2.3956 4.2415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752916802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:38 Heat of formation + Delta-G solvation = -21.131899 kcal Electronic energy + Delta-G solvation = -24720.272117 eV Core-core repulsion = 21249.306957 eV Total energy + Delta-G solvation = -3470.965159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66902 -38.95292 -36.38857 -35.52778 -33.55281 -32.43886 -31.91118 -30.36378 -28.74303 -26.62525 -25.38058 -24.75684 -23.65093 -22.24952 -20.75515 -20.27471 -19.99867 -18.50087 -17.77114 -17.30091 -16.28844 -15.66803 -15.32736 -15.12851 -14.84804 -14.51475 -14.10688 -13.99670 -13.82333 -13.62790 -13.47794 -13.15594 -12.93540 -12.41397 -12.24393 -12.12510 -12.05079 -11.94284 -11.59110 -11.40852 -11.24570 -10.96618 -10.89324 -10.86839 -10.77039 -10.75140 -10.51822 -10.37373 -10.03458 -9.75579 -9.73219 -9.00272 -8.77306 -8.50469 -8.28129 -7.06028 -5.82434 -3.13143 0.66171 1.58689 2.00983 2.42649 3.38974 3.44397 3.45939 3.46202 3.54840 4.40407 4.53193 4.57838 4.66957 4.80762 4.87499 5.09205 5.18220 5.24187 5.35645 5.44543 5.45147 5.46849 5.48177 5.56624 5.58688 5.74012 5.84197 5.90676 5.92650 5.93414 5.98812 6.00304 6.08221 6.15510 6.16940 6.29261 6.35245 6.49332 6.54817 6.72363 6.80018 7.02338 7.64647 7.87083 8.34549 8.48729 9.46544 10.00987 10.36879 11.39367 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003639 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.961649 B = 7691.744491 C = 9404.957986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.054 0.946 4 C 0.116 3.884 5 N -0.708 5.708 6 C 0.586 3.414 7 O -0.546 6.546 8 C -0.262 4.262 9 C -0.057 4.057 10 C -0.121 4.121 11 C -0.201 4.201 12 S 0.219 5.781 13 C -0.045 4.045 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.051 4.051 18 N -0.724 5.724 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.513 0.246 -12.616 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.072 0.928 4 C -0.009 4.009 5 N -0.359 5.359 6 C 0.372 3.628 7 O -0.426 6.426 8 C -0.382 4.382 9 C -0.090 4.090 10 C -0.134 4.134 11 C -0.321 4.321 12 S 0.491 5.509 13 C -0.084 4.084 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.090 4.090 18 N -0.367 5.367 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.576 5.576 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.764 0.841 -11.713 18.093 hybrid contribution 0.501 -0.504 0.089 0.716 sum 14.265 0.337 -11.625 18.405 Atomic orbital electron populations 1.22355 0.98148 1.01335 1.00416 1.20524 0.92804 0.95749 0.86097 0.92819 1.21744 0.78842 1.01390 0.98897 1.45872 1.08588 1.58558 1.22851 1.16952 0.84834 0.78208 0.82787 1.90778 1.68954 1.49068 1.33785 1.24440 0.97626 1.13971 1.02190 1.20664 0.91410 0.97704 0.99220 1.19283 0.94275 1.03294 0.96589 1.24543 1.01100 1.06406 1.00033 1.83518 0.93673 1.53771 1.19988 1.20610 0.89346 0.97842 1.00622 1.21212 1.00995 0.95362 0.97721 1.20807 0.98250 1.00224 0.96082 1.21128 0.98546 0.97509 0.98163 1.20713 0.95351 0.96838 0.96138 1.42486 1.78102 1.10854 1.05253 1.19217 1.37064 0.93916 0.87314 0.91095 1.24735 1.01927 0.95899 0.97960 1.69667 1.50407 1.08643 1.28930 0.86235 0.77328 0.78830 0.84036 1.21741 1.21782 1.20721 0.92262 0.94140 0.93155 0.91550 0.91551 0.75544 0.83519 0.89917 0.90617 0.91274 0.91422 0.92378 0.92429 0.91649 0.91713 0.90823 0.90904 0.78064 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.16 3.02 3.05 -67.93 -0.21 2.81 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 C 0.12 2.05 5.23 -4.04 -0.02 2.03 16 5 N -0.71 -12.80 5.38 -61.65 -0.33 -13.13 16 6 C 0.59 10.79 7.78 -12.90 -0.10 10.69 16 7 O -0.55 -11.30 16.84 5.19 0.09 -11.21 16 8 C -0.26 -4.18 6.44 -36.92 -0.24 -4.42 16 9 C -0.06 -0.80 9.78 -40.21 -0.39 -1.19 16 10 C -0.12 -1.45 5.06 -104.89 -0.53 -1.98 16 11 C -0.20 -2.41 5.46 -34.90 -0.19 -2.60 16 12 S 0.22 3.09 22.10 -107.50 -2.38 0.71 16 13 C -0.05 -0.42 5.86 -26.86 -0.16 -0.58 16 14 C -0.11 -0.99 5.61 -27.60 -0.15 -1.15 16 15 C -0.12 -0.89 5.14 -28.68 -0.15 -1.04 16 16 C -0.12 -0.97 5.56 -27.79 -0.15 -1.13 16 17 C -0.05 -0.46 5.81 -26.71 -0.16 -0.61 16 18 N -0.72 -17.15 4.56 -53.42 -0.24 -17.39 16 19 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 20 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 23 Si 0.90 21.62 29.55 -169.99 -5.02 16.59 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.41 7.51 7.25 -40.82 -0.30 7.22 16 33 H 0.15 1.99 8.05 -52.49 -0.42 1.56 16 34 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 40 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 44 H 0.39 9.93 7.80 -40.82 -0.32 9.61 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -30.27 376.45 -11.10 -41.37 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.26 Total: 12.22 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.34 Total: -8.53 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.15 Total: -56.83 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.38 Total: 0.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.27 -11.10 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752916802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.238 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds