Wall clock time and date at job start Tue Mar 31 2020 13:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46816 * 2 1 4 4 C 1.52996 * 109.46902 * 239.99899 * 2 1 3 5 5 N 1.46505 * 109.47161 * 184.99878 * 4 2 1 6 6 C 1.34768 * 119.99960 * 180.02562 * 5 4 2 7 7 O 1.21703 * 120.00559 * 359.97438 * 6 5 4 8 8 C 1.46588 * 119.99689 * 180.02562 * 6 5 4 9 9 C 1.36277 * 125.48991 * 179.97438 * 8 6 5 10 10 C 1.38437 * 113.81510 * 180.02562 * 9 8 6 11 11 C 1.33812 * 114.17235 * 359.66695 * 10 9 8 12 12 S 1.70755 * 111.45287 * 0.46444 * 11 10 9 13 13 C 1.52630 * 124.26521 * 180.51108 * 11 10 9 14 14 C 1.53116 * 107.66735 * 293.46864 * 13 11 10 15 15 C 1.51152 * 111.12111 * 80.63823 * 14 13 11 16 16 C 1.50972 * 115.84229 * 288.24662 * 15 14 13 17 17 C 1.52922 * 111.54530 * 72.35750 * 16 15 14 18 18 N 1.46502 * 109.46981 * 120.00283 * 2 1 3 19 19 C 1.36935 * 119.99512 * 274.99637 * 18 2 1 20 20 H 1.08003 * 120.00480 * 0.02562 * 19 18 2 21 21 C 1.38810 * 119.99833 * 180.02562 * 19 18 2 22 22 N 1.31622 * 120.00171 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00270 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47507 * 89.99845 * 23 21 19 25 25 H 1.48499 * 109.47500 * 210.00173 * 23 21 19 26 26 H 1.48504 * 109.46788 * 329.99948 * 23 21 19 27 27 H 1.08996 * 109.47096 * 299.99923 * 1 2 3 28 28 H 1.08997 * 109.46902 * 60.00059 * 1 2 3 29 29 H 1.08999 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47377 * 65.00257 * 4 2 1 31 31 H 1.08999 * 109.47310 * 304.99653 * 4 2 1 32 32 H 0.97000 * 119.99666 * 0.02562 * 5 4 2 33 33 H 1.08000 * 123.08879 * 0.02562 * 9 8 6 34 34 H 1.09002 * 109.83034 * 53.03099 * 13 11 10 35 35 H 1.09002 * 109.83060 * 173.90711 * 13 11 10 36 36 H 1.08999 * 109.13601 * 201.16529 * 14 13 11 37 37 H 1.08998 * 109.14143 * 320.29270 * 14 13 11 38 38 H 1.09006 * 108.19098 * 166.59481 * 15 14 13 39 39 H 1.08997 * 108.18677 * 49.90602 * 15 14 13 40 40 H 1.08999 * 109.06710 * 311.82509 * 16 15 14 41 41 H 1.09001 * 109.06367 * 192.88390 * 16 15 14 42 42 H 1.08999 * 109.82671 * 159.23489 * 17 16 15 43 43 H 1.09007 * 109.82824 * 38.30833 * 17 16 15 44 44 H 0.96999 * 120.00235 * 95.00311 * 18 2 1 45 45 H 0.96999 * 120.00078 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1912 7 8 3.5679 -1.8849 -3.1432 8 6 5.6339 -1.5339 -2.1322 9 6 6.4237 -2.1174 -3.0771 10 6 7.7745 -2.0827 -2.7757 11 6 8.0620 -1.4779 -1.6172 12 16 6.6488 -0.9282 -0.8321 13 6 9.4749 -1.3009 -1.0677 14 6 10.0195 -2.6914 -0.7295 15 6 10.5312 -3.3919 -1.9673 16 6 9.4769 -3.8653 -2.9387 17 6 8.8392 -2.6956 -3.6895 18 7 2.0184 -0.6907 1.1962 19 6 2.1492 -0.0075 2.3757 20 1 1.8920 1.0403 2.4243 21 6 2.6123 -0.6617 3.5089 22 7 2.9263 -1.9386 3.4497 23 14 2.7901 0.2699 5.1183 24 1 1.5225 0.1778 5.8863 25 1 3.8952 -0.3226 5.9139 26 1 3.0941 1.6955 4.8339 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7517 -0.1583 -2.1370 31 1 1.6054 -1.7198 -1.2951 32 1 3.9824 -0.4628 -0.4316 33 1 6.0319 -2.5657 -3.9782 34 1 10.1075 -0.8288 -1.8194 35 1 9.4475 -0.6856 -0.1684 36 1 10.8332 -2.5914 -0.0111 37 1 9.2234 -3.2887 -0.2852 38 1 11.1165 -4.2558 -1.6520 39 1 11.1977 -2.7089 -2.4938 40 1 8.7022 -4.4011 -2.3902 41 1 9.9351 -4.5431 -3.6589 42 1 8.3756 -3.0547 -4.6083 43 1 9.5982 -1.9494 -3.9247 44 1 2.2491 -1.6318 1.1526 45 1 3.2503 -2.3956 4.2415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752916802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:37 Heat of formation + Delta-G solvation = -38.393790 kcal Electronic energy + Delta-G solvation = -24721.020648 eV Core-core repulsion = 21249.306957 eV Total energy + Delta-G solvation = -3471.713691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93102 -40.02710 -37.97261 -36.46094 -35.25633 -33.69566 -33.16800 -31.42695 -30.52342 -27.87659 -26.24577 -25.98990 -25.43578 -23.29893 -21.84103 -21.63185 -21.07010 -19.69654 -19.22399 -18.84851 -17.52061 -16.92443 -16.89288 -16.30730 -16.16048 -15.67337 -15.53478 -15.25418 -14.83951 -14.78119 -14.59423 -14.26331 -13.98416 -13.94363 -13.69110 -13.51218 -13.12328 -13.09058 -12.86967 -12.78928 -12.54683 -12.47888 -12.19767 -12.13201 -11.76648 -11.72521 -11.66386 -11.51138 -11.49141 -11.34217 -11.18581 -10.96821 -10.21247 -9.63794 -9.33643 -9.03962 -7.91228 -5.21190 -0.47206 0.48026 0.94480 1.34379 1.49785 1.50616 1.58639 2.09001 2.18148 2.57649 3.42750 3.60135 3.71127 3.86402 3.92146 3.95362 4.02750 4.10260 4.12162 4.34968 4.40268 4.43040 4.56422 4.59446 4.66105 4.69735 4.77967 4.80207 4.90293 4.96853 4.98547 5.04938 5.20653 5.22582 5.24674 5.29958 5.31123 5.32918 5.39389 5.54449 5.54628 5.55977 5.56398 6.28589 6.41065 7.03893 7.35953 8.06832 8.32147 9.31470 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003639 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.961649 B = 7691.744491 C = 9404.957986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.060 0.940 4 C 0.122 3.878 5 N -0.709 5.709 6 C 0.585 3.415 7 O -0.577 6.577 8 C -0.298 4.298 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.184 4.184 12 S 0.195 5.805 13 C -0.046 4.046 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.048 4.048 18 N -0.733 5.733 19 C -0.237 4.237 20 H 0.079 0.921 21 C -0.068 4.068 22 N -0.966 5.966 23 Si 0.966 3.034 24 H -0.292 1.292 25 H -0.298 1.298 26 H -0.267 1.267 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.406 0.594 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.372 0.628 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.390 1.286 -13.496 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.002 4.002 5 N -0.359 5.359 6 C 0.373 3.627 7 O -0.460 6.460 8 C -0.418 4.418 9 C -0.082 4.082 10 C -0.140 4.140 11 C -0.304 4.304 12 S 0.467 5.533 13 C -0.085 4.085 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.087 4.087 18 N -0.374 5.374 19 C -0.369 4.369 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.617 5.617 23 Si 0.796 3.204 24 H -0.220 1.220 25 H -0.225 1.225 26 H -0.192 1.192 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.242 0.758 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.204 0.796 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.618 1.928 -12.615 20.169 hybrid contribution -0.047 -0.821 0.274 0.867 sum 15.571 1.107 -12.341 19.899 Atomic orbital electron populations 1.22222 0.96355 1.01272 1.01544 1.20702 0.93899 0.95570 0.84852 0.92203 1.21687 0.78759 1.00846 0.98917 1.45891 1.08701 1.58545 1.22754 1.17271 0.85893 0.77406 0.82177 1.90741 1.69918 1.50495 1.34820 1.24274 0.96649 1.16878 1.03972 1.20930 0.92393 0.96281 0.98641 1.19594 0.94072 1.03142 0.97149 1.24957 1.01477 1.04656 0.99343 1.83540 0.95005 1.54525 1.20278 1.20804 0.87651 0.98630 1.01400 1.21228 1.00776 0.94530 0.98686 1.20814 0.98180 1.00913 0.95510 1.21136 0.98222 0.97359 0.98534 1.20829 0.94802 0.97334 0.95727 1.42620 1.78425 1.10291 1.06110 1.19574 1.35012 0.94233 0.88037 0.90336 1.25451 1.02876 0.96673 1.01059 1.69824 1.52376 1.10204 1.29260 0.85251 0.76615 0.78285 0.80255 1.21997 1.22525 1.19210 0.93421 0.90649 0.93843 0.89579 0.92729 0.75797 0.83344 0.87581 0.90223 0.89561 0.93753 0.91519 0.90632 0.93908 0.89862 0.90022 0.88995 0.79633 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.49 71.98 0.68 -4.48 16 2 C 0.16 5.95 3.05 44.99 0.14 6.09 16 3 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 4 C 0.12 4.32 5.23 86.38 0.45 4.77 16 5 N -0.71 -26.25 5.38 -467.17 -2.52 -28.76 16 6 C 0.58 22.17 7.78 86.42 0.67 22.85 16 7 O -0.58 -24.51 16.84 -4.36 -0.07 -24.58 16 8 C -0.30 -9.75 6.44 23.99 0.15 -9.60 16 9 C -0.05 -1.36 9.78 21.86 0.21 -1.14 16 10 C -0.13 -2.90 5.06 -20.04 -0.10 -3.00 16 11 C -0.18 -4.22 5.46 25.30 0.14 -4.08 16 12 S 0.20 5.60 22.10 -56.49 -1.25 4.35 16 13 C -0.05 -0.74 5.86 30.51 0.18 -0.56 16 14 C -0.11 -1.72 5.61 30.03 0.17 -1.55 16 15 C -0.12 -1.44 5.14 29.33 0.15 -1.29 16 16 C -0.11 -1.65 5.56 29.91 0.17 -1.49 16 17 C -0.05 -0.73 5.81 30.60 0.18 -0.56 16 18 N -0.73 -35.08 4.56 -322.93 -1.47 -36.55 16 19 C -0.24 -12.43 9.93 84.03 0.83 -11.59 16 20 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 22 N -0.97 -57.53 13.06 21.65 0.28 -57.24 16 23 Si 0.97 44.70 29.55 68.60 2.03 46.72 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.41 15.40 7.25 -92.71 -0.67 14.73 16 33 H 0.15 4.05 8.05 -2.91 -0.02 4.02 16 34 H 0.11 1.29 7.87 -2.39 -0.02 1.27 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.04 0.88 7.91 -2.39 -0.02 0.86 16 38 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.70 7.71 -2.39 -0.02 0.68 16 40 H 0.04 0.81 7.89 -2.39 -0.02 0.79 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 43 H 0.09 1.11 7.88 -2.38 -0.02 1.09 16 44 H 0.37 19.71 7.80 -92.71 -0.72 18.99 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -65.93 376.45 1.09 -64.83 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: -0.40 Total: 40.15 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.49 Total: -8.91 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -3.71 Total: -122.56 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.07 Total: -24.58 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.25 Total: 4.35 kcal Total: -65.93 1.09 -64.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752916802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.438 kcal (2) G-P(sol) polarization free energy of solvation -65.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds