Wall clock time and date at job start Tue Mar 31 2020 12:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35913 * 116.99695 * 2 1 4 4 C 1.38498 * 119.95075 * 359.97438 * 3 2 1 5 5 C 1.39570 * 119.89847 * 180.02562 * 4 3 2 6 6 C 1.47753 * 120.09744 * 179.97438 * 5 4 3 7 7 O 1.21463 * 120.00056 * 0.02562 * 6 5 4 8 8 O 1.34706 * 119.99835 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99832 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47317 * 299.99939 * 10 9 8 12 12 C 1.52997 * 109.47269 * 60.00284 * 10 9 8 13 13 C 1.50706 * 109.46953 * 180.02562 * 10 9 8 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00344 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46691 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46740 * 119.99592 * 17 15 13 20 20 H 1.48497 * 109.47025 * 239.99950 * 17 15 13 21 21 C 1.39567 * 119.80215 * 0.25656 * 5 4 3 22 22 C 1.38498 * 119.90213 * 359.53487 * 21 5 4 23 23 O 1.35906 * 119.95260 * 180.23553 * 22 21 5 24 24 C 1.42902 * 116.99891 * 0.20783 * 23 22 21 25 25 C 1.38737 * 119.94755 * 180.02562 * 3 2 1 26 26 C 1.50695 * 119.90390 * 359.97438 * 25 3 2 27 27 H 1.08998 * 109.47501 * 300.00729 * 1 2 3 28 28 H 1.09003 * 109.47311 * 60.00319 * 1 2 3 29 29 H 1.08999 * 109.47538 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.05335 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47070 * 300.00022 * 9 8 6 32 32 H 1.09001 * 109.46626 * 60.00040 * 9 8 6 33 33 H 1.09002 * 109.47153 * 60.00359 * 11 10 9 34 34 H 1.09001 * 109.46832 * 180.02562 * 11 10 9 35 35 H 1.08992 * 109.47303 * 299.99871 * 11 10 9 36 36 H 1.09000 * 109.47140 * 59.99453 * 12 10 9 37 37 H 1.09001 * 109.47375 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47497 * 299.99829 * 12 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.04593 * 179.72772 * 21 5 4 41 41 H 1.09000 * 109.47313 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.46931 * 300.00424 * 24 23 22 43 43 H 1.08996 * 109.47375 * 60.00186 * 24 23 22 44 44 H 1.08998 * 109.47408 * 89.99872 * 26 25 3 45 45 H 1.08997 * 109.47695 * 210.00386 * 26 25 3 46 46 H 1.09005 * 109.47025 * 329.99970 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2906 2.3719 -0.0005 5 6 1.9253 3.6149 -0.0011 6 6 1.1237 4.8561 -0.0022 7 8 -0.0894 4.7957 -0.0022 8 8 1.7384 6.0548 -0.0033 9 6 0.8879 7.2317 -0.0038 10 6 1.7584 8.4899 -0.0043 11 6 2.6417 8.4995 1.2449 12 6 2.6417 8.4985 -1.2535 13 6 0.8757 9.7114 -0.0042 14 1 -0.1986 9.6013 -0.0034 15 6 1.4397 10.9696 -0.0052 16 7 2.7480 11.1037 -0.0056 17 14 0.3456 12.4836 -0.0057 18 1 -1.0790 12.0647 -0.0044 19 1 0.6235 13.2955 1.2062 20 1 0.6228 13.2941 -1.2188 21 6 3.3193 3.6819 -0.0065 22 6 4.0666 2.5159 -0.0016 23 8 5.4242 2.5800 -0.0020 24 6 6.0121 3.8825 -0.0030 25 6 3.4315 1.2824 -0.0005 26 6 4.2490 0.0165 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2120 2.3154 -0.0005 31 1 0.2583 7.2246 -0.8935 32 1 0.2590 7.2258 0.8865 33 1 3.2801 7.6160 1.2453 34 1 3.2615 9.3961 1.2447 35 1 2.0125 8.4935 2.1348 36 1 2.0124 8.4916 -2.1435 37 1 3.2615 9.3951 -1.2542 38 1 3.2801 7.6150 -1.2533 39 1 3.1449 11.9887 -0.0059 40 1 3.8145 4.6417 -0.0114 41 1 7.0983 3.7909 -0.0038 42 1 5.6930 4.4244 -0.8933 43 1 5.6936 4.4257 0.8866 44 1 4.4457 -0.2890 -1.0282 45 1 5.1939 0.1941 0.5129 46 1 3.6986 -0.7714 0.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184794563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:20 Heat of formation + Delta-G solvation = -144.108868 kcal Electronic energy + Delta-G solvation = -27728.830694 eV Core-core repulsion = 23777.487231 eV Total energy + Delta-G solvation = -3951.343463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92760 -39.72645 -39.18003 -36.86765 -36.21153 -34.87928 -33.11272 -31.29290 -29.78017 -28.00952 -27.89623 -27.13654 -25.66543 -25.63052 -25.06121 -22.81218 -21.97884 -20.84925 -18.91538 -18.69109 -17.32082 -16.64853 -16.43488 -16.25427 -15.96226 -15.74047 -15.73867 -15.65920 -15.38277 -14.79907 -14.45069 -13.56899 -13.54303 -13.16628 -13.10827 -12.92217 -12.63443 -12.54159 -12.19864 -11.91969 -11.88067 -11.67554 -11.56355 -11.53879 -11.30821 -11.16406 -11.02330 -10.80995 -10.70676 -10.46415 -10.29565 -10.15206 -9.94476 -9.45843 -9.36444 -8.79364 -8.49045 -8.41497 -8.32454 -6.05801 -4.17242 0.62146 1.23606 2.66920 2.70901 3.09470 3.24474 3.33072 3.37904 3.46586 3.66355 4.34963 4.58416 4.71617 4.77176 4.87191 4.97002 5.05921 5.09977 5.14471 5.18315 5.21002 5.28568 5.39605 5.49851 5.56845 5.60172 5.78763 6.02821 6.03803 6.06246 6.14691 6.20175 6.27446 6.42428 6.69043 6.93743 6.97362 7.05481 7.08457 7.09867 7.17230 7.35665 7.57701 7.66643 8.00821 8.09015 8.18013 8.35208 8.82837 9.48539 10.95547 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003040 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.781567 B = 9207.539719 C =10455.354644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.148 3.852 4 C -0.181 4.181 5 C -0.044 4.044 6 C 0.499 3.501 7 O -0.512 6.512 8 O -0.341 6.341 9 C 0.084 3.916 10 C 0.070 3.930 11 C -0.129 4.129 12 C -0.129 4.129 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.068 3.932 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.180 4.180 22 C 0.150 3.850 23 O -0.310 6.310 24 C 0.022 3.978 25 C -0.124 4.124 26 C -0.096 4.096 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.144 0.856 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.085 0.915 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.085 0.915 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.150 0.850 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 -20.128 0.013 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.103 3.897 4 C -0.200 4.200 5 C -0.046 4.046 6 C 0.344 3.656 7 O -0.403 6.403 8 O -0.257 6.257 9 C 0.011 3.989 10 C 0.070 3.930 11 C -0.187 4.187 12 C -0.187 4.187 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.133 4.133 16 N -0.521 5.521 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.199 4.199 22 C 0.104 3.896 23 O -0.223 6.223 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.103 0.897 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.168 0.832 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.825 -20.279 0.013 20.637 hybrid contribution -1.153 1.473 -0.007 1.871 sum 2.672 -18.806 0.007 18.994 Atomic orbital electron populations 1.23136 0.77867 1.04052 1.02023 1.86042 1.21640 1.25904 1.88628 1.18133 0.90731 0.84168 0.96683 1.21184 1.01026 0.90349 1.07401 1.18724 0.92550 0.90783 1.02514 1.21054 0.86328 0.84901 0.73364 1.90781 1.15073 1.88359 1.46100 1.86564 1.42323 1.14530 1.82267 1.23744 0.93167 0.81166 1.00774 1.18254 0.92839 0.88125 0.93783 1.21770 0.99367 1.00690 0.96861 1.21770 0.99366 1.00691 0.96860 1.20977 0.92665 0.89792 1.51561 0.92414 1.24852 0.95061 0.98779 0.94635 1.69831 1.09203 1.22876 1.50141 0.86481 0.80826 0.82759 0.77628 1.19755 1.20942 1.20937 1.21544 0.93476 0.98715 1.06186 1.18257 0.82930 0.92304 0.96083 1.86031 1.16332 1.31503 1.88409 1.23190 0.98907 0.82717 1.02445 1.18508 0.90581 0.94431 1.09005 1.20454 0.98988 0.93399 1.02408 0.92258 0.92254 0.87997 0.83823 0.92360 0.92366 0.96563 0.89679 0.95788 0.95790 0.89677 0.96561 0.92937 0.83219 0.87932 0.91940 0.91944 0.91346 0.91059 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.37 9.52 -19.47 -0.19 -3.56 16 3 C 0.15 1.87 6.65 -39.30 -0.26 1.61 16 4 C -0.18 -2.50 8.58 -38.99 -0.33 -2.83 16 5 C -0.04 -0.69 5.87 -105.02 -0.62 -1.31 16 6 C 0.50 9.36 7.90 34.62 0.27 9.64 16 7 O -0.51 -10.54 16.13 -19.24 -0.31 -10.85 16 8 O -0.34 -6.87 8.13 -40.51 -0.33 -7.20 16 9 C 0.08 1.86 4.27 37.16 0.16 2.02 16 10 C 0.07 1.70 0.58 -155.66 -0.09 1.61 16 11 C -0.13 -3.05 8.11 37.16 0.30 -2.75 16 12 C -0.13 -3.05 8.11 37.16 0.30 -2.75 16 13 C -0.51 -13.55 8.01 -34.44 -0.28 -13.83 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.81 5.15 -17.82 -0.09 1.71 16 16 N -0.88 -23.63 9.35 55.43 0.52 -23.11 16 17 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.18 -2.56 8.60 -38.99 -0.34 -2.90 16 22 C 0.15 1.95 6.65 -39.30 -0.26 1.68 16 23 O -0.31 -3.60 9.52 -19.44 -0.19 -3.79 16 24 C 0.02 0.20 9.81 101.05 0.99 1.20 16 25 C -0.12 -1.54 5.91 -104.25 -0.62 -2.16 16 26 C -0.10 -0.96 9.56 36.00 0.34 -0.62 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.14 1.88 5.87 -52.49 -0.31 1.57 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.34 7.68 -51.93 -0.40 -0.06 16 34 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 38 H 0.02 0.34 7.68 -51.93 -0.40 -0.06 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.15 2.09 5.83 -52.49 -0.31 1.78 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 43 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 46 H 0.07 0.66 7.52 -51.93 -0.39 0.27 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -29.51 374.95 -6.30 -35.81 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.91 Total: -0.09 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 0.48 Total: -8.49 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.52 Total: -23.11 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.01 Total: -25.39 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.51 -6.30 -35.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184794563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.303 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds