Wall clock time and date at job start Tue Mar 31 2020 12:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35913 * 116.99695 * 2 1 4 4 C 1.38498 * 119.95075 * 359.97438 * 3 2 1 5 5 C 1.39570 * 119.89847 * 180.02562 * 4 3 2 6 6 C 1.47753 * 120.09744 * 179.97438 * 5 4 3 7 7 O 1.21463 * 120.00056 * 0.02562 * 6 5 4 8 8 O 1.34706 * 119.99835 * 180.02562 * 6 5 4 9 9 C 1.45206 * 116.99832 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46777 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47317 * 299.99939 * 10 9 8 12 12 C 1.52997 * 109.47269 * 60.00284 * 10 9 8 13 13 C 1.50706 * 109.46953 * 180.02562 * 10 9 8 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00344 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46691 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46740 * 119.99592 * 17 15 13 20 20 H 1.48497 * 109.47025 * 239.99950 * 17 15 13 21 21 C 1.39567 * 119.80215 * 0.25656 * 5 4 3 22 22 C 1.38498 * 119.90213 * 359.53487 * 21 5 4 23 23 O 1.35906 * 119.95260 * 180.23553 * 22 21 5 24 24 C 1.42902 * 116.99891 * 0.20783 * 23 22 21 25 25 C 1.38737 * 119.94755 * 180.02562 * 3 2 1 26 26 C 1.50695 * 119.90390 * 359.97438 * 25 3 2 27 27 H 1.08998 * 109.47501 * 300.00729 * 1 2 3 28 28 H 1.09003 * 109.47311 * 60.00319 * 1 2 3 29 29 H 1.08999 * 109.47538 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.05335 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47070 * 300.00022 * 9 8 6 32 32 H 1.09001 * 109.46626 * 60.00040 * 9 8 6 33 33 H 1.09002 * 109.47153 * 60.00359 * 11 10 9 34 34 H 1.09001 * 109.46832 * 180.02562 * 11 10 9 35 35 H 1.08992 * 109.47303 * 299.99871 * 11 10 9 36 36 H 1.09000 * 109.47140 * 59.99453 * 12 10 9 37 37 H 1.09001 * 109.47375 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47497 * 299.99829 * 12 10 9 39 39 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.04593 * 179.72772 * 21 5 4 41 41 H 1.09000 * 109.47313 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.46931 * 300.00424 * 24 23 22 43 43 H 1.08996 * 109.47375 * 60.00186 * 24 23 22 44 44 H 1.08998 * 109.47408 * 89.99872 * 26 25 3 45 45 H 1.08997 * 109.47695 * 210.00386 * 26 25 3 46 46 H 1.09005 * 109.47025 * 329.99970 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2906 2.3719 -0.0005 5 6 1.9253 3.6149 -0.0011 6 6 1.1237 4.8561 -0.0022 7 8 -0.0894 4.7957 -0.0022 8 8 1.7384 6.0548 -0.0033 9 6 0.8879 7.2317 -0.0038 10 6 1.7584 8.4899 -0.0043 11 6 2.6417 8.4995 1.2449 12 6 2.6417 8.4985 -1.2535 13 6 0.8757 9.7114 -0.0042 14 1 -0.1986 9.6013 -0.0034 15 6 1.4397 10.9696 -0.0052 16 7 2.7480 11.1037 -0.0056 17 14 0.3456 12.4836 -0.0057 18 1 -1.0790 12.0647 -0.0044 19 1 0.6235 13.2955 1.2062 20 1 0.6228 13.2941 -1.2188 21 6 3.3193 3.6819 -0.0065 22 6 4.0666 2.5159 -0.0016 23 8 5.4242 2.5800 -0.0020 24 6 6.0121 3.8825 -0.0030 25 6 3.4315 1.2824 -0.0005 26 6 4.2490 0.0165 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2120 2.3154 -0.0005 31 1 0.2583 7.2246 -0.8935 32 1 0.2590 7.2258 0.8865 33 1 3.2801 7.6160 1.2453 34 1 3.2615 9.3961 1.2447 35 1 2.0125 8.4935 2.1348 36 1 2.0124 8.4916 -2.1435 37 1 3.2615 9.3951 -1.2542 38 1 3.2801 7.6150 -1.2533 39 1 3.1449 11.9887 -0.0059 40 1 3.8145 4.6417 -0.0114 41 1 7.0983 3.7909 -0.0038 42 1 5.6930 4.4244 -0.8933 43 1 5.6936 4.4257 0.8866 44 1 4.4457 -0.2890 -1.0282 45 1 5.1939 0.1941 0.5129 46 1 3.6986 -0.7714 0.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184794563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:19 Heat of formation + Delta-G solvation = -158.827135 kcal Electronic energy + Delta-G solvation = -27729.468926 eV Core-core repulsion = 23777.487231 eV Total energy + Delta-G solvation = -3951.981695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02863 -41.13062 -40.04682 -38.44313 -37.33125 -36.66136 -34.12178 -33.25405 -30.77025 -28.98390 -28.74420 -28.03587 -27.59006 -27.41666 -26.84108 -24.01690 -22.93443 -22.06864 -20.77069 -19.90744 -18.52189 -17.98074 -17.56227 -17.47072 -17.33033 -17.24070 -16.97742 -16.69912 -16.46535 -16.37785 -15.46850 -14.97211 -14.86624 -14.65870 -14.33320 -14.29956 -13.77321 -13.48399 -13.40249 -13.36790 -13.15490 -13.05421 -12.85342 -12.62765 -12.62393 -12.47670 -12.43294 -12.35675 -12.25218 -12.14249 -11.78676 -11.76999 -11.68800 -11.31768 -11.22894 -10.75253 -10.42043 -9.46423 -9.32615 -8.06395 -6.24239 -0.53820 0.22016 1.38079 1.41289 1.43969 1.52528 1.60678 1.88018 2.43980 2.53363 2.63389 3.17356 3.40120 3.72792 3.80709 3.88831 4.04656 4.21912 4.23142 4.30040 4.37031 4.38281 4.41963 4.45504 4.56907 4.70040 4.74416 4.75188 4.80396 4.84304 4.86298 5.02708 5.07550 5.10479 5.17074 5.20605 5.25510 5.31323 5.42059 5.48889 5.62083 5.63254 6.06228 6.15189 6.17567 6.24766 6.35268 6.61933 6.80482 7.43866 8.93527 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003040 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.781567 B = 9207.539719 C =10455.354644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.310 6.310 3 C 0.152 3.848 4 C -0.182 4.182 5 C -0.065 4.065 6 C 0.500 3.500 7 O -0.536 6.536 8 O -0.342 6.342 9 C 0.095 3.905 10 C 0.063 3.937 11 C -0.118 4.118 12 C -0.118 4.118 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.030 3.970 16 N -0.898 5.898 17 Si 0.952 3.048 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.183 4.183 22 C 0.149 3.851 23 O -0.310 6.310 24 C 0.015 3.985 25 C -0.124 4.124 26 C -0.093 4.093 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.149 0.851 41 H 0.130 0.870 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -21.730 -0.005 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.223 6.223 3 C 0.106 3.894 4 C -0.201 4.201 5 C -0.067 4.067 6 C 0.346 3.654 7 O -0.428 6.428 8 O -0.258 6.258 9 C 0.022 3.978 10 C 0.062 3.938 11 C -0.176 4.176 12 C -0.176 4.176 13 C -0.573 4.573 14 H 0.067 0.933 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.778 3.222 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.202 4.202 22 C 0.103 3.897 23 O -0.223 6.223 24 C -0.079 4.079 25 C -0.125 4.125 26 C -0.150 4.150 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.165 0.835 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.166 0.834 41 H 0.148 0.852 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.415 -21.895 -0.005 22.336 hybrid contribution -1.298 1.847 -0.002 2.257 sum 3.117 -20.048 -0.007 20.289 Atomic orbital electron populations 1.23426 0.76203 1.06120 1.02149 1.86056 1.23294 1.24765 1.88213 1.18165 0.90918 0.84355 0.96010 1.21242 1.01367 0.90183 1.07272 1.18584 0.92918 0.89736 1.05417 1.21598 0.86425 0.85088 0.72283 1.90759 1.16138 1.88526 1.47425 1.86547 1.41918 1.14653 1.82688 1.23367 0.92720 0.81564 1.00121 1.18268 0.92974 0.88405 0.94125 1.21622 0.99064 1.00461 0.96467 1.21622 0.99064 1.00463 0.96465 1.21226 0.92635 0.91170 1.52221 0.93289 1.25483 0.96222 1.01026 0.94325 1.69931 1.10158 1.23460 1.50108 0.85603 0.79204 0.79718 0.77679 1.19796 1.20528 1.20516 1.21531 0.92941 0.99345 1.06398 1.18308 0.83560 0.92047 0.95765 1.86043 1.15396 1.32780 1.88114 1.23422 1.00397 0.81826 1.02277 1.18884 0.90894 0.95283 1.07444 1.20511 0.98893 0.92300 1.03254 0.92141 0.92144 0.85016 0.83531 0.93027 0.93037 0.94827 0.91629 0.96217 0.96216 0.91627 0.94822 0.92785 0.83364 0.85160 0.92111 0.92116 0.90283 0.90472 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.31 -6.10 9.52 -92.57 -0.88 -6.98 16 3 C 0.15 3.58 6.65 22.45 0.15 3.73 16 4 C -0.18 -4.90 8.58 22.65 0.19 -4.71 16 5 C -0.07 -2.03 5.87 -20.12 -0.12 -2.15 16 6 C 0.50 18.90 7.90 70.34 0.56 19.45 16 7 O -0.54 -22.37 16.13 19.96 0.32 -22.05 16 8 O -0.34 -13.83 8.13 -56.16 -0.46 -14.28 16 9 C 0.10 4.28 4.27 71.98 0.31 4.59 16 10 C 0.06 3.05 0.58 -52.93 -0.03 3.02 16 11 C -0.12 -5.61 8.11 71.98 0.58 -5.02 16 12 C -0.12 -5.61 8.11 71.98 0.58 -5.02 16 13 C -0.53 -28.59 8.01 25.60 0.21 -28.39 16 14 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 15 C 0.03 1.56 5.15 84.65 0.44 2.00 16 16 N -0.90 -48.26 9.35 21.45 0.20 -48.06 16 17 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.18 -5.08 8.60 22.65 0.19 -4.89 16 22 C 0.15 3.66 6.65 22.45 0.15 3.81 16 23 O -0.31 -6.63 9.52 -92.49 -0.88 -7.51 16 24 C 0.01 0.25 9.81 113.37 1.11 1.36 16 25 C -0.12 -2.84 5.91 -19.63 -0.12 -2.96 16 26 C -0.09 -1.62 9.56 71.23 0.68 -0.94 16 27 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 28 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 29 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.15 3.77 5.87 -2.91 -0.02 3.76 16 31 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.33 16 33 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 34 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 38 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 39 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 40 H 0.15 4.07 5.83 -2.91 -0.02 4.05 16 41 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.05 7.65 -2.39 -0.02 1.03 16 43 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 1.27 7.52 -2.39 -0.02 1.25 16 46 H 0.08 1.25 7.52 -2.38 -0.02 1.23 16 Total: -1.00 -62.22 374.95 7.31 -54.90 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.98 Total: 14.38 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 6.00 Total: -14.79 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.20 Total: -48.06 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -1.90 Total: -50.82 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -62.22 7.31 -54.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184794563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.924 kcal (2) G-P(sol) polarization free energy of solvation -62.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds