Wall clock time and date at job start Tue Mar 31 2020 14:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47116 * 2 1 4 4 N 1.46505 * 109.46699 * 119.99608 * 2 1 3 5 5 C 1.34621 * 125.77603 * 275.01483 * 4 2 1 6 6 C 1.38131 * 107.36076 * 179.73516 * 5 4 2 7 7 C 1.47194 * 126.41067 * 180.26608 * 6 5 4 8 8 C 1.34853 * 119.99786 * 185.36402 * 7 6 5 9 9 C 1.46345 * 119.99978 * 182.38187 * 8 7 6 10 10 N 1.31600 * 125.22009 * 0.06582 * 9 8 7 11 11 C 1.35518 * 109.67700 * 179.82888 * 10 9 8 12 12 C 1.39885 * 133.21168 * 180.09786 * 11 10 9 13 13 C 1.37662 * 119.78381 * 180.35224 * 12 11 10 14 14 C 1.38752 * 120.53554 * 0.02562 * 13 12 11 15 15 C 1.37984 * 120.46015 * 359.97438 * 14 13 12 16 16 C 1.38714 * 119.86827 * 0.02562 * 15 14 13 17 17 N 1.37702 * 125.21552 * 180.36763 * 9 8 7 18 18 C 1.37036 * 126.45318 * 359.97438 * 17 9 8 19 19 H 1.07995 * 120.00527 * 321.30264 * 18 17 9 20 20 C 1.38992 * 119.99671 * 141.30356 * 18 17 9 21 21 N 1.31357 * 119.99761 * 341.04626 * 20 18 17 22 22 Si 1.86800 * 120.00282 * 161.04836 * 20 18 17 23 23 H 1.48501 * 109.46855 * 89.99549 * 22 20 18 24 24 H 1.48491 * 109.47235 * 209.99805 * 22 20 18 25 25 H 1.48503 * 109.46759 * 330.00172 * 22 20 18 26 26 C 1.41329 * 107.17461 * 0.36465 * 6 5 4 27 27 N 1.30502 * 108.08924 * 359.63129 * 26 6 5 28 28 H 1.09002 * 109.47605 * 300.00158 * 1 2 3 29 29 H 1.09006 * 109.47090 * 60.00682 * 1 2 3 30 30 H 1.09004 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47115 * 239.99797 * 2 1 3 32 32 H 1.09002 * 109.46972 * 299.99943 * 3 2 1 33 33 H 1.09002 * 109.47012 * 59.99479 * 3 2 1 34 34 H 1.09001 * 109.47288 * 179.97438 * 3 2 1 35 35 H 1.08001 * 126.32482 * 359.97166 * 5 4 2 36 36 H 1.08002 * 120.00261 * 5.36820 * 7 6 5 37 37 H 1.08004 * 120.00483 * 2.38689 * 8 7 6 38 38 H 1.07995 * 120.10281 * 0.34013 * 12 11 10 39 39 H 1.08002 * 119.73254 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.76895 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.06516 * 179.97438 * 15 14 13 42 42 H 0.97006 * 119.99936 * 185.10626 * 21 20 18 43 43 H 1.08001 * 125.95731 * 179.89256 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1905 -0.1352 2.4104 6 6 2.6575 -1.1245 3.2537 7 6 2.9814 -0.9743 4.6817 8 6 3.5322 -2.0015 5.3598 9 6 3.8061 -1.8702 6.7914 10 7 3.5561 -0.8012 7.5170 11 6 3.9294 -1.0234 8.8007 12 6 3.8855 -0.2418 9.9600 13 6 4.3575 -0.7531 11.1477 14 6 4.8774 -2.0383 11.2049 15 6 4.9285 -2.8233 10.0712 16 6 4.4578 -2.3260 8.8649 17 7 4.3704 -2.8442 7.5846 18 6 4.7699 -4.0917 7.1820 19 1 4.1804 -4.6419 6.4635 20 6 5.9338 -4.6490 7.6984 21 7 6.8362 -3.8792 8.2628 22 14 6.2147 -6.4925 7.5898 23 1 6.9196 -6.8120 6.3224 24 1 7.0411 -6.9360 8.7411 25 1 4.9067 -7.1951 7.6194 26 6 2.7684 -2.3073 2.4882 27 7 2.3838 -2.0393 1.2703 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.9956 0.8931 2.6770 36 1 2.7778 -0.0414 5.1864 37 1 3.7714 -2.9212 4.8465 38 1 3.4828 0.7596 9.9231 39 1 4.3229 -0.1491 12.0424 40 1 5.2440 -2.4272 12.1434 41 1 5.3349 -3.8226 10.1229 42 1 7.6803 -4.2564 8.5564 43 1 3.1078 -3.2669 2.8493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352009745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:08 Heat of formation + Delta-G solvation = 135.500925 kcal Electronic energy + Delta-G solvation = -25469.373906 eV Core-core repulsion = 21902.049655 eV Total energy + Delta-G solvation = -3567.324251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.39568 -42.11159 -37.90798 -36.87807 -35.99932 -34.64565 -33.08967 -31.34563 -30.90362 -30.62997 -28.67503 -28.17261 -27.10754 -24.88483 -23.61416 -22.88031 -22.47810 -21.55760 -20.90857 -20.03994 -19.23473 -18.15468 -17.46220 -17.17400 -16.38198 -16.30935 -16.18756 -15.76909 -15.71023 -15.15644 -14.85198 -14.73154 -14.55618 -14.41319 -13.87191 -13.72156 -13.47762 -13.29353 -13.15799 -13.01194 -12.97858 -12.77772 -12.53481 -12.47331 -12.35293 -12.28609 -12.07166 -12.01652 -11.54137 -11.42317 -11.10516 -10.75013 -10.53887 -10.42056 -9.31443 -8.95189 -8.53777 -8.16487 -6.44335 -0.04186 0.74948 1.02710 1.14663 1.34824 1.39662 1.50595 1.53723 2.06236 2.14270 2.57737 2.82242 2.99487 3.32311 3.47869 3.66364 3.89307 3.90951 3.98921 4.10852 4.19495 4.35162 4.39062 4.43789 4.56570 4.61929 4.65982 4.74313 4.80289 4.82821 4.86251 4.92268 4.96390 5.08303 5.17309 5.19506 5.23571 5.32302 5.46060 5.59392 5.71085 5.77092 5.83685 5.89021 6.10398 6.12413 6.26766 6.41792 6.70853 6.74385 7.37134 7.54314 8.38504 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.003116 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.570152 B = 8983.403302 C =10697.372352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 C -0.161 4.161 4 N -0.358 5.358 5 C 0.088 3.912 6 C -0.232 4.232 7 C -0.013 4.013 8 C -0.109 4.109 9 C 0.227 3.773 10 N -0.539 5.539 11 C 0.002 3.998 12 C -0.100 4.100 13 C -0.130 4.130 14 C -0.146 4.146 15 C -0.076 4.076 16 C 0.012 3.988 17 N -0.301 5.301 18 C -0.386 4.386 19 H 0.113 0.887 20 C 0.019 3.981 21 N -0.856 5.856 22 Si 0.999 3.001 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.257 1.257 26 C 0.056 3.944 27 N -0.329 5.329 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.210 0.790 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 7.323 -11.459 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 C -0.219 4.219 4 N -0.138 5.138 5 C -0.061 4.061 6 C -0.243 4.243 7 C -0.037 4.037 8 C -0.129 4.129 9 C -0.029 4.029 10 N -0.263 5.263 11 C -0.122 4.122 12 C -0.120 4.120 13 C -0.150 4.150 14 C -0.166 4.166 15 C -0.097 4.097 16 C -0.103 4.103 17 N 0.028 4.972 18 C -0.514 4.514 19 H 0.130 0.870 20 C -0.191 4.191 21 N -0.486 5.486 22 Si 0.819 3.181 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.130 4.130 27 N -0.149 5.149 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.619 7.467 -13.029 17.315 hybrid contribution 1.176 -1.567 1.152 2.273 sum -7.444 5.900 -11.878 15.208 Atomic orbital electron populations 1.22224 0.92392 1.02593 1.04534 1.21695 0.95759 0.93792 0.84419 1.22229 1.01856 0.92372 1.05432 1.49041 1.48733 1.06691 1.09353 1.23368 0.97825 1.00204 0.84712 1.19408 1.16131 0.94327 0.94476 1.21150 0.94564 0.97583 0.90375 1.20578 1.04690 1.00805 0.86872 1.22275 1.02291 0.84332 0.94001 1.70490 1.29036 1.24502 1.02310 1.19518 1.04973 0.94146 0.93607 1.20346 1.02603 0.99174 0.89861 1.21002 1.00750 0.95804 0.97486 1.21036 1.03214 0.95082 0.97270 1.20069 0.99266 0.99843 0.90507 1.19285 1.06820 0.96729 0.87487 1.41482 1.39692 1.11338 1.04643 1.19985 1.09956 0.91034 1.30421 0.86950 1.26574 0.93468 1.05369 0.93646 1.70080 1.05847 1.38520 1.34139 0.84870 0.79280 0.74961 0.78997 1.18440 1.19500 1.18047 1.24269 0.98357 0.99957 0.90415 1.77039 1.22262 0.94749 1.20878 0.91658 0.87698 0.93456 0.87951 0.87383 0.90536 0.92333 0.77295 0.85696 0.85611 0.84946 0.82517 0.83915 0.88553 0.90526 0.79462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.52 71.98 0.69 -1.15 16 2 C 0.14 2.04 3.92 44.99 0.18 2.22 16 3 C -0.16 -1.44 8.83 71.98 0.64 -0.80 16 4 N -0.36 -8.19 3.51 -325.38 -1.14 -9.33 16 5 C 0.09 2.06 10.61 84.24 0.89 2.95 16 6 C -0.23 -7.03 6.08 -20.19 -0.12 -7.15 16 7 C -0.01 -0.47 9.76 23.85 0.23 -0.24 16 8 C -0.11 -4.67 9.28 23.60 0.22 -4.46 16 9 C 0.23 11.87 7.59 135.63 1.03 12.90 16 10 N -0.54 -28.32 10.74 -181.89 -1.95 -30.27 16 11 C 0.00 0.12 7.21 39.58 0.29 0.41 16 12 C -0.10 -4.29 10.10 22.53 0.23 -4.06 16 13 C -0.13 -4.83 10.01 22.26 0.22 -4.61 16 14 C -0.15 -5.89 10.03 22.33 0.22 -5.67 16 15 C -0.08 -3.82 8.70 22.32 0.19 -3.62 16 16 C 0.01 0.66 6.13 38.82 0.24 0.90 16 17 N -0.30 -16.86 2.84 -335.71 -0.95 -17.81 16 18 C -0.39 -20.75 9.41 84.06 0.79 -19.96 16 19 H 0.11 5.66 7.89 -2.91 -0.02 5.64 16 20 C 0.02 0.98 4.51 84.94 0.38 1.36 16 21 N -0.86 -46.40 11.17 21.67 0.24 -46.15 16 22 Si 1.00 38.94 29.60 68.60 2.03 40.97 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 25 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 26 C 0.06 1.70 11.38 85.65 0.97 2.67 16 27 N -0.33 -9.66 12.50 -56.22 -0.70 -10.37 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.59 7.14 -2.39 -0.02 0.57 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.21 3.25 7.24 -2.91 -0.02 3.23 16 36 H 0.13 4.51 7.68 -2.91 -0.02 4.49 16 37 H 0.13 5.15 6.79 -2.91 -0.02 5.13 16 38 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.10 4.97 6.65 -2.91 -0.02 4.95 16 42 H 0.28 14.21 8.32 -92.70 -0.77 13.44 16 43 H 0.19 5.34 7.35 -2.91 -0.02 5.32 16 Total: -1.00 -73.48 366.81 5.83 -67.65 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 1.02 Total: 33.62 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 7.29 Total: -28.30 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.51 Total: -113.94 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -73.48 5.83 -67.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352009745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.153 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds