Wall clock time and date at job start Tue Mar 31 2020 13:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 H 1.09003 * 109.47161 * 53.50709 * 3 2 1 5 5 N 1.46896 * 109.47349 * 293.50205 * 3 2 1 6 6 C 1.46897 * 111.00042 * 152.86105 * 5 3 2 7 7 C 1.53037 * 109.46514 * 273.17891 * 6 5 3 8 8 C 1.53191 * 109.31604 * 178.60062 * 7 6 5 9 9 N 1.46925 * 108.76501 * 54.65377 * 8 7 6 10 10 C 1.36939 * 120.63161 * 126.36422 * 9 8 7 11 11 H 1.07999 * 120.00035 * 329.31972 * 10 9 8 12 12 C 1.38817 * 119.99802 * 149.31114 * 10 9 8 13 13 N 1.31616 * 120.00495 * 342.55028 * 12 10 9 14 14 Si 1.86800 * 119.99669 * 162.54286 * 12 10 9 15 15 H 1.48497 * 109.47021 * 90.00457 * 14 12 10 16 16 H 1.48494 * 109.47319 * 210.00524 * 14 12 10 17 17 H 1.48502 * 109.47298 * 330.00443 * 14 12 10 18 18 C 1.46923 * 118.73737 * 306.38232 * 9 8 7 19 19 C 1.53038 * 109.46256 * 153.12076 * 6 5 3 20 20 C 1.50698 * 109.46641 * 173.50424 * 3 2 1 21 21 C 1.38238 * 119.98904 * 79.73070 * 20 3 2 22 22 C 1.38214 * 120.01522 * 179.72418 * 21 20 3 23 23 C 1.38354 * 119.98463 * 0.54423 * 22 21 20 24 24 Cl 1.73607 * 120.01102 * 179.75069 * 23 22 21 25 25 C 1.38345 * 119.97231 * 359.72455 * 23 22 21 26 26 C 1.38215 * 119.99009 * 0.02562 * 25 23 22 27 27 H 1.08992 * 109.47219 * 182.50278 * 1 2 3 28 28 H 1.09008 * 109.46732 * 302.50319 * 1 2 3 29 29 H 1.09008 * 109.47317 * 62.49570 * 1 2 3 30 30 H 1.08993 * 109.47232 * 120.00075 * 2 1 3 31 31 H 1.08998 * 109.46795 * 240.00620 * 2 1 3 32 32 H 1.00903 * 110.99782 * 28.91315 * 5 3 2 33 33 H 1.09002 * 109.45690 * 33.15132 * 6 5 3 34 34 H 1.09000 * 109.49575 * 298.56108 * 7 6 5 35 35 H 1.08997 * 109.49692 * 58.65664 * 7 6 5 36 36 H 1.09004 * 109.59919 * 294.86191 * 8 7 6 37 37 H 1.08998 * 109.70464 * 174.50563 * 8 7 6 38 38 H 0.96997 * 120.00110 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.59358 * 293.82461 * 18 9 8 40 40 H 1.09001 * 109.70742 * 173.46736 * 18 9 8 41 41 H 1.08998 * 109.49615 * 301.34041 * 19 6 5 42 42 H 1.08996 * 109.50031 * 61.40408 * 19 6 5 43 43 H 1.08008 * 119.99427 * 359.97438 * 21 20 3 44 44 H 1.08007 * 120.00923 * 180.27434 * 22 21 20 45 45 H 1.08008 * 120.00487 * 179.97438 * 25 23 22 46 46 H 1.07996 * 119.99637 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5848 1.9889 0.8262 5 7 1.6825 2.0884 -1.2700 6 6 1.5500 3.5417 -1.1026 7 6 0.1247 3.8758 -0.6566 8 6 0.0001 5.3885 -0.4493 9 7 0.4224 6.0706 -1.6802 10 6 -0.3973 6.9836 -2.2883 11 1 -1.4697 6.8783 -2.2169 12 6 0.1504 8.0446 -2.9965 13 7 1.4094 8.3799 -2.8106 14 14 -0.8997 8.9962 -4.2135 15 1 -1.5627 10.1275 -3.5165 16 1 -0.0399 9.5222 -5.3039 17 1 -1.9314 8.0955 -4.7875 18 6 1.7407 5.7542 -2.2465 19 6 1.8458 4.2373 -2.4333 20 6 3.5384 1.4455 0.1607 21 6 4.3506 1.1891 -0.9281 22 6 5.7250 1.1973 -0.7825 23 6 6.2877 1.4511 0.4557 24 17 8.0139 1.4551 0.6407 25 6 5.4742 1.7021 1.5462 26 6 4.1000 1.6987 1.3983 27 1 -0.3633 -1.0266 0.0449 28 1 -0.3633 0.5523 0.8668 29 1 -0.3634 0.4746 -0.9116 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 0.8382 1.6901 -1.6531 33 1 2.2569 3.8862 -0.3478 34 1 -0.5810 3.5541 -1.4224 35 1 -0.0936 3.3614 0.2792 36 1 0.6391 5.6981 0.3777 37 1 -1.0356 5.6449 -0.2264 38 1 1.7921 9.1211 -3.3057 39 1 2.5218 6.0935 -1.5661 40 1 1.8552 6.2499 -3.2105 41 1 2.8527 3.9802 -2.7622 42 1 1.1242 3.9117 -3.1824 43 1 3.9112 0.9864 -1.8937 44 1 6.3596 1.0014 -1.6342 45 1 5.9129 1.8998 2.5132 46 1 3.4649 1.8951 2.2494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610341993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:04 Heat of formation + Delta-G solvation = 25.021922 kcal Electronic energy + Delta-G solvation = -25358.026970 eV Core-core repulsion = 21887.019484 eV Total energy + Delta-G solvation = -3471.007486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.82147 -38.14193 -36.70575 -35.90013 -33.37620 -31.43464 -31.11085 -30.82788 -29.91970 -28.67629 -25.79650 -24.31226 -22.92500 -22.30880 -22.14305 -21.42289 -20.29084 -19.15969 -17.18342 -16.80258 -16.01535 -15.58229 -15.18322 -14.77187 -14.67444 -14.10210 -13.81874 -13.58755 -13.54637 -13.45999 -13.37984 -13.13649 -12.82875 -12.52352 -12.45659 -12.24205 -11.65144 -11.55843 -11.43938 -11.26461 -11.14934 -11.01663 -10.90502 -10.81998 -10.70609 -10.68525 -10.23271 -10.19990 -9.99650 -9.72429 -9.43801 -9.05841 -8.58887 -8.46967 -8.13072 -6.61635 -5.77642 -3.21670 1.09916 1.28235 2.06189 3.37854 3.45123 3.47480 3.58258 4.24318 4.50960 4.65975 4.76739 4.83829 4.89418 4.98116 5.19712 5.32779 5.34704 5.38321 5.43396 5.49305 5.51959 5.62409 5.67357 5.71866 5.79466 5.88054 5.90501 5.95248 6.07820 6.12556 6.17512 6.24045 6.32464 6.46946 6.50329 6.63433 6.69306 6.72327 6.78187 6.86360 6.96272 7.33074 7.38698 7.62385 7.68902 7.81874 8.48425 9.23488 9.86568 10.45376 11.30931 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003233 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.342791 B = 8658.079025 C =10094.119132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C 0.123 3.877 4 H 0.056 0.944 5 N -0.681 5.681 6 C 0.098 3.902 7 C -0.158 4.158 8 C 0.150 3.850 9 N -0.591 5.591 10 C -0.256 4.256 11 H 0.062 0.938 12 C 0.006 3.994 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.287 1.287 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.174 3.826 19 C -0.123 4.123 20 C -0.063 4.063 21 C -0.072 4.072 22 C -0.116 4.116 23 C -0.038 4.038 24 Cl -0.082 7.082 25 C -0.114 4.114 26 C -0.107 4.107 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.341 0.659 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.014 0.986 37 H 0.051 0.949 38 H 0.254 0.746 39 H 0.016 0.984 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.139 0.861 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 -18.847 7.384 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C 0.013 3.987 4 H 0.073 0.927 5 N -0.313 5.313 6 C -0.011 4.011 7 C -0.199 4.199 8 C 0.022 3.978 9 N -0.314 5.314 10 C -0.386 4.386 11 H 0.080 0.920 12 C -0.193 4.193 13 N -0.543 5.543 14 Si 0.729 3.271 15 H -0.214 1.214 16 H -0.215 1.215 17 H -0.205 1.205 18 C 0.048 3.952 19 C -0.163 4.163 20 C -0.064 4.064 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.065 4.065 24 Cl -0.053 7.053 25 C -0.133 4.133 26 C -0.126 4.126 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.157 0.843 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.571 -18.672 7.088 21.025 hybrid contribution -1.076 0.742 -0.064 1.309 sum 5.495 -17.930 7.024 20.026 Atomic orbital electron populations 1.21840 0.95522 1.01840 1.02140 1.21699 0.95844 0.95529 1.02823 1.20449 0.90674 0.94717 0.92845 0.92651 1.60730 1.41005 1.04793 1.24747 1.21533 0.95499 0.85393 0.98667 1.22678 0.97576 1.00082 0.99524 1.20806 0.97974 0.89407 0.89569 1.44022 1.17209 1.46233 1.23898 1.19113 0.89244 1.02239 1.27999 0.92015 1.25093 0.96431 0.96340 1.01458 1.70044 1.13256 1.28913 1.42083 0.86352 0.79662 0.79863 0.81208 1.21402 1.21527 1.20472 1.20712 0.86241 0.88959 0.99310 1.22149 1.00021 0.98782 0.95340 1.19999 0.95770 0.97662 0.92958 1.21014 0.91527 0.96956 0.99501 1.21105 0.95650 1.00986 0.95738 1.20918 0.84085 1.05727 0.95763 1.98357 1.11894 1.97144 1.97899 1.20936 0.93249 1.01185 0.97936 1.20992 0.94042 1.00072 0.97475 0.92439 0.92655 0.92336 0.91435 0.90932 0.83874 0.91441 0.92265 0.93739 0.96768 0.93018 0.93640 0.96550 0.90104 0.92852 0.92886 0.84274 0.85254 0.85324 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.72 37.16 0.36 -0.95 16 2 C -0.12 -1.08 5.47 -26.73 -0.15 -1.23 16 3 C 0.12 1.36 2.02 -68.86 -0.14 1.22 16 4 H 0.06 0.65 7.11 -51.93 -0.37 0.28 16 5 N -0.68 -8.69 5.32 -100.91 -0.54 -9.23 16 6 C 0.10 1.59 2.23 -67.68 -0.15 1.44 16 7 C -0.16 -2.62 5.31 -26.61 -0.14 -2.76 16 8 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 9 N -0.59 -14.79 2.98 -172.32 -0.51 -15.31 16 10 C -0.26 -7.06 9.55 -15.06 -0.14 -7.20 16 11 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 12 C 0.01 0.17 4.88 -17.43 -0.09 0.08 16 13 N -0.90 -26.31 11.43 55.49 0.63 -25.68 16 14 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.17 4.16 5.29 -3.71 -0.02 4.14 16 19 C -0.12 -2.34 5.69 -26.61 -0.15 -2.49 16 20 C -0.06 -0.73 4.73 -104.62 -0.49 -1.22 16 21 C -0.07 -0.84 9.32 -39.59 -0.37 -1.21 16 22 C -0.12 -1.33 9.83 -39.55 -0.39 -1.71 16 23 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 24 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 25 C -0.11 -1.26 9.83 -39.55 -0.39 -1.65 16 26 C -0.11 -1.18 9.67 -39.59 -0.38 -1.56 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.52 6.59 -51.92 -0.34 0.17 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.34 4.13 6.31 -39.29 -0.25 3.88 16 33 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.64 7.58 -51.93 -0.39 0.25 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 2.17 6.29 -51.93 -0.33 1.84 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.14 1.59 7.73 -52.48 -0.41 1.19 16 44 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 46 H 0.13 1.18 8.04 -52.49 -0.42 0.76 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -28.97 376.80 -11.70 -40.67 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.52 Total: 2.28 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.91 Total: -12.70 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.42 Total: -50.21 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.97 -11.70 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610341993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.696 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds