Wall clock time and date at job start Tue Mar 31 2020 13:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 H 1.09003 * 109.47161 * 53.50709 * 3 2 1 5 5 N 1.46896 * 109.47349 * 293.50205 * 3 2 1 6 6 C 1.46897 * 111.00042 * 152.86105 * 5 3 2 7 7 C 1.53037 * 109.46514 * 273.17891 * 6 5 3 8 8 C 1.53191 * 109.31604 * 178.60062 * 7 6 5 9 9 N 1.46925 * 108.76501 * 54.65377 * 8 7 6 10 10 C 1.36939 * 120.63161 * 126.36422 * 9 8 7 11 11 H 1.07999 * 120.00035 * 329.31972 * 10 9 8 12 12 C 1.38817 * 119.99802 * 149.31114 * 10 9 8 13 13 N 1.31616 * 120.00495 * 342.55028 * 12 10 9 14 14 Si 1.86800 * 119.99669 * 162.54286 * 12 10 9 15 15 H 1.48497 * 109.47021 * 90.00457 * 14 12 10 16 16 H 1.48494 * 109.47319 * 210.00524 * 14 12 10 17 17 H 1.48502 * 109.47298 * 330.00443 * 14 12 10 18 18 C 1.46923 * 118.73737 * 306.38232 * 9 8 7 19 19 C 1.53038 * 109.46256 * 153.12076 * 6 5 3 20 20 C 1.50698 * 109.46641 * 173.50424 * 3 2 1 21 21 C 1.38238 * 119.98904 * 79.73070 * 20 3 2 22 22 C 1.38214 * 120.01522 * 179.72418 * 21 20 3 23 23 C 1.38354 * 119.98463 * 0.54423 * 22 21 20 24 24 Cl 1.73607 * 120.01102 * 179.75069 * 23 22 21 25 25 C 1.38345 * 119.97231 * 359.72455 * 23 22 21 26 26 C 1.38215 * 119.99009 * 0.02562 * 25 23 22 27 27 H 1.08992 * 109.47219 * 182.50278 * 1 2 3 28 28 H 1.09008 * 109.46732 * 302.50319 * 1 2 3 29 29 H 1.09008 * 109.47317 * 62.49570 * 1 2 3 30 30 H 1.08993 * 109.47232 * 120.00075 * 2 1 3 31 31 H 1.08998 * 109.46795 * 240.00620 * 2 1 3 32 32 H 1.00903 * 110.99782 * 28.91315 * 5 3 2 33 33 H 1.09002 * 109.45690 * 33.15132 * 6 5 3 34 34 H 1.09000 * 109.49575 * 298.56108 * 7 6 5 35 35 H 1.08997 * 109.49692 * 58.65664 * 7 6 5 36 36 H 1.09004 * 109.59919 * 294.86191 * 8 7 6 37 37 H 1.08998 * 109.70464 * 174.50563 * 8 7 6 38 38 H 0.96997 * 120.00110 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.59358 * 293.82461 * 18 9 8 40 40 H 1.09001 * 109.70742 * 173.46736 * 18 9 8 41 41 H 1.08998 * 109.49615 * 301.34041 * 19 6 5 42 42 H 1.08996 * 109.50031 * 61.40408 * 19 6 5 43 43 H 1.08008 * 119.99427 * 359.97438 * 21 20 3 44 44 H 1.08007 * 120.00923 * 180.27434 * 22 21 20 45 45 H 1.08008 * 120.00487 * 179.97438 * 25 23 22 46 46 H 1.07996 * 119.99637 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5848 1.9889 0.8262 5 7 1.6825 2.0884 -1.2700 6 6 1.5500 3.5417 -1.1026 7 6 0.1247 3.8758 -0.6566 8 6 0.0001 5.3885 -0.4493 9 7 0.4224 6.0706 -1.6802 10 6 -0.3973 6.9836 -2.2883 11 1 -1.4697 6.8783 -2.2169 12 6 0.1504 8.0446 -2.9965 13 7 1.4094 8.3799 -2.8106 14 14 -0.8997 8.9962 -4.2135 15 1 -1.5627 10.1275 -3.5165 16 1 -0.0399 9.5222 -5.3039 17 1 -1.9314 8.0955 -4.7875 18 6 1.7407 5.7542 -2.2465 19 6 1.8458 4.2373 -2.4333 20 6 3.5384 1.4455 0.1607 21 6 4.3506 1.1891 -0.9281 22 6 5.7250 1.1973 -0.7825 23 6 6.2877 1.4511 0.4557 24 17 8.0139 1.4551 0.6407 25 6 5.4742 1.7021 1.5462 26 6 4.1000 1.6987 1.3983 27 1 -0.3633 -1.0266 0.0449 28 1 -0.3633 0.5523 0.8668 29 1 -0.3634 0.4746 -0.9116 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 0.8382 1.6901 -1.6531 33 1 2.2569 3.8862 -0.3478 34 1 -0.5810 3.5541 -1.4224 35 1 -0.0936 3.3614 0.2792 36 1 0.6391 5.6981 0.3777 37 1 -1.0356 5.6449 -0.2264 38 1 1.7921 9.1211 -3.3057 39 1 2.5218 6.0935 -1.5661 40 1 1.8552 6.2499 -3.2105 41 1 2.8527 3.9802 -2.7622 42 1 1.1242 3.9117 -3.1824 43 1 3.9112 0.9864 -1.8937 44 1 6.3596 1.0014 -1.6342 45 1 5.9129 1.8998 2.5132 46 1 3.4649 1.8951 2.2494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610341993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:03 Heat of formation + Delta-G solvation = 10.996118 kcal Electronic energy + Delta-G solvation = -25358.635174 eV Core-core repulsion = 21887.019484 eV Total energy + Delta-G solvation = -3471.615690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75363 -39.46226 -37.78086 -36.99754 -34.93348 -33.00265 -31.95074 -31.76355 -31.58419 -30.15269 -27.03337 -25.87329 -23.87347 -23.73546 -23.13632 -22.97694 -21.22693 -20.73643 -18.72783 -18.03394 -17.01111 -16.86984 -16.44769 -16.22668 -15.62739 -15.41416 -15.32299 -14.96489 -14.79285 -14.51579 -14.37804 -14.34828 -14.26610 -13.82024 -13.47976 -13.26541 -13.08289 -12.97517 -12.60425 -12.54340 -12.44855 -12.39165 -12.15715 -11.98918 -11.91130 -11.81058 -11.77927 -11.73562 -11.57073 -11.39176 -11.09976 -10.55045 -9.91243 -9.46273 -9.26484 -8.65226 -7.88087 -5.35517 0.22884 0.42838 1.20043 1.45820 1.47692 1.57471 2.51081 2.71524 3.17725 3.29845 3.70442 3.80856 3.93000 3.98172 4.03094 4.15462 4.18932 4.27459 4.41190 4.44602 4.51210 4.55451 4.58255 4.72617 4.76552 4.81190 4.87157 4.93606 4.98190 5.02055 5.11145 5.16071 5.17936 5.27693 5.29878 5.32261 5.35367 5.37771 5.48232 5.50536 5.65408 5.66085 5.73697 5.93334 6.21282 6.40173 6.59775 7.15190 7.86024 8.39571 9.18333 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003233 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.342791 B = 8658.079025 C =10094.119132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C 0.127 3.873 4 H 0.055 0.945 5 N -0.675 5.675 6 C 0.114 3.886 7 C -0.142 4.142 8 C 0.144 3.856 9 N -0.609 5.609 10 C -0.267 4.267 11 H 0.064 0.936 12 C -0.048 4.048 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.284 1.284 16 H -0.293 1.293 17 H -0.269 1.269 18 C 0.183 3.817 19 C -0.108 4.108 20 C -0.072 4.072 21 C -0.081 4.081 22 C -0.124 4.124 23 C -0.051 4.051 24 Cl -0.080 7.080 25 C -0.119 4.119 26 C -0.112 4.112 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.349 0.651 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.007 0.993 37 H 0.051 0.949 38 H 0.250 0.750 39 H -0.011 1.011 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -20.710 7.940 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C 0.017 3.983 4 H 0.073 0.927 5 N -0.307 5.307 6 C 0.004 3.996 7 C -0.182 4.182 8 C 0.018 3.982 9 N -0.333 5.333 10 C -0.397 4.397 11 H 0.082 0.918 12 C -0.244 4.244 13 N -0.579 5.579 14 Si 0.793 3.207 15 H -0.211 1.211 16 H -0.219 1.219 17 H -0.194 1.194 18 C 0.056 3.944 19 C -0.148 4.148 20 C -0.073 4.073 21 C -0.099 4.099 22 C -0.142 4.142 23 C -0.077 4.077 24 Cl -0.051 7.051 25 C -0.138 4.138 26 C -0.131 4.131 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.007 0.993 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.161 0.839 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.552 -20.575 7.660 22.646 hybrid contribution -0.730 1.303 -0.166 1.503 sum 4.822 -19.272 7.494 21.232 Atomic orbital electron populations 1.21834 0.94899 1.02620 1.01865 1.21644 0.96240 0.93890 1.03347 1.20485 0.90397 0.95842 0.91551 0.92709 1.60562 1.41435 1.02575 1.26106 1.21179 0.94849 0.87361 0.96206 1.22500 0.97803 0.96764 1.01143 1.20978 0.97587 0.91945 0.87707 1.44286 1.17126 1.46394 1.25445 1.19461 0.89783 1.02499 1.27955 0.91808 1.25866 0.97606 0.97586 1.03295 1.70198 1.14981 1.29571 1.43172 0.85317 0.78106 0.78522 0.78735 1.21066 1.21883 1.19385 1.20483 0.85323 0.91952 0.96599 1.21895 1.00414 0.95311 0.97164 1.20142 0.96104 0.97855 0.93232 1.21087 0.91735 0.97391 0.99684 1.21267 0.95862 1.00946 0.96160 1.21082 0.84385 1.06110 0.96128 1.98355 1.11701 1.97153 1.97894 1.21173 0.93411 1.00722 0.98468 1.21222 0.94298 0.99651 0.97888 0.91263 0.92684 0.92752 0.90495 0.90849 0.82950 0.92711 0.92156 0.90621 0.97488 0.93015 0.94136 0.99268 0.93705 0.92168 0.93077 0.84213 0.84356 0.83905 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.72 71.98 0.70 -1.40 16 2 C -0.11 -1.69 5.47 30.60 0.17 -1.52 16 3 C 0.13 2.47 2.02 44.17 0.09 2.56 16 4 H 0.05 1.11 7.11 -2.39 -0.02 1.10 16 5 N -0.67 -15.67 5.32 -473.18 -2.52 -18.19 16 6 C 0.11 3.51 2.23 44.94 0.10 3.61 16 7 C -0.14 -4.40 5.31 30.67 0.16 -4.24 16 8 C 0.14 5.93 6.52 86.36 0.56 6.49 16 9 N -0.61 -30.87 2.98 -699.10 -2.08 -32.95 16 10 C -0.27 -14.84 9.55 84.03 0.80 -14.04 16 11 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 12 C -0.05 -2.70 4.88 84.86 0.41 -2.29 16 13 N -0.93 -56.31 11.43 21.65 0.25 -56.06 16 14 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.18 8.99 5.29 86.36 0.46 9.45 16 19 C -0.11 -4.08 5.69 30.67 0.17 -3.91 16 20 C -0.07 -1.54 4.73 -19.86 -0.09 -1.64 16 21 C -0.08 -1.78 9.32 22.26 0.21 -1.57 16 22 C -0.12 -2.71 9.83 22.29 0.22 -2.49 16 23 C -0.05 -1.12 6.32 22.32 0.14 -0.97 16 24 Cl -0.08 -1.67 28.96 -2.72 -0.08 -1.75 16 25 C -0.12 -2.44 9.83 22.29 0.22 -2.22 16 26 C -0.11 -2.25 9.67 22.27 0.22 -2.03 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 0.79 6.59 -2.38 -0.02 0.77 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.35 7.44 6.31 -89.69 -0.57 6.87 16 33 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.92 7.58 -2.39 -0.02 1.91 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 38 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.04 2.50 6.29 -2.39 -0.02 2.49 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.14 3.00 7.73 -2.91 -0.02 2.98 16 44 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 46 H 0.14 2.32 8.04 -2.91 -0.02 2.30 16 Total: -1.00 -63.27 376.80 2.53 -60.75 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.39 Total: 17.21 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.54 Total: -16.21 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -4.35 Total: -107.20 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -63.27 2.53 -60.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610341993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.741 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds