Wall clock time and date at job start Tue Mar 31 2020 12:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38218 * 119.99335 * 2 1 4 4 C 1.38349 * 119.98969 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 120.01391 * 179.97438 * 4 3 2 6 6 C 1.38352 * 119.97364 * 359.97438 * 4 3 2 7 7 C 1.38214 * 119.98679 * 0.03566 * 6 4 3 8 8 C 1.50698 * 119.99570 * 179.97438 * 7 6 4 9 9 C 1.38243 * 119.99705 * 180.02562 * 2 1 3 10 10 C 1.50701 * 119.98227 * 359.97438 * 9 2 1 11 11 N 1.46904 * 109.46820 * 90.00615 * 10 9 2 12 12 C 1.46903 * 110.99665 * 179.97438 * 11 10 9 13 13 C 1.53036 * 109.46103 * 275.02222 * 12 11 10 14 14 C 1.53183 * 109.31392 * 178.60291 * 13 12 11 15 15 N 1.46926 * 108.76841 * 54.65566 * 14 13 12 16 16 C 1.36935 * 120.62879 * 126.40292 * 15 14 13 17 17 H 1.07998 * 120.00777 * 331.82363 * 16 15 14 18 18 C 1.38820 * 119.99537 * 151.82632 * 16 15 14 19 19 N 1.31613 * 120.00144 * 343.08210 * 18 16 15 20 20 Si 1.86798 * 119.99866 * 163.07743 * 18 16 15 21 21 H 1.48504 * 109.46938 * 60.00115 * 20 18 16 22 22 H 1.48502 * 109.47353 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47563 * 300.00298 * 20 18 16 24 24 C 1.46925 * 118.73707 * 306.38581 * 15 14 13 25 25 C 1.53041 * 109.45804 * 154.96813 * 12 11 10 26 26 H 1.09009 * 109.47241 * 89.99440 * 1 2 3 27 27 H 1.08999 * 109.47470 * 209.99052 * 1 2 3 28 28 H 1.08999 * 109.47950 * 329.99797 * 1 2 3 29 29 H 1.08002 * 120.00386 * 359.75294 * 3 2 1 30 30 H 1.08000 * 120.00659 * 180.02562 * 6 4 3 31 31 H 1.09002 * 109.46859 * 269.98010 * 8 7 6 32 32 H 1.08997 * 109.46915 * 29.98070 * 8 7 6 33 33 H 1.09005 * 109.47190 * 149.97947 * 8 7 6 34 34 H 1.09005 * 109.46775 * 209.99774 * 10 9 2 35 35 H 1.08995 * 109.47150 * 330.00164 * 10 9 2 36 36 H 1.00894 * 111.00258 * 56.04078 * 11 10 9 37 37 H 1.08997 * 109.45921 * 34.99838 * 12 11 10 38 38 H 1.08996 * 109.49861 * 298.57058 * 13 12 11 39 39 H 1.08997 * 109.49535 * 58.66400 * 13 12 11 40 40 H 1.09007 * 109.60002 * 294.86643 * 14 13 12 41 41 H 1.09004 * 109.70448 * 174.51016 * 14 13 12 42 42 H 0.96997 * 120.00294 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58746 * 293.82031 * 24 15 14 44 44 H 1.08999 * 109.70542 * 173.45969 * 24 15 14 45 45 H 1.08994 * 109.49960 * 301.33759 * 25 12 11 46 46 H 1.09002 * 109.49674 * 61.40442 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5813 1.1970 -0.0005 5 17 4.4498 2.7002 -0.0012 6 6 4.2725 -0.0015 -0.0005 7 6 3.5805 -1.1980 -0.0007 8 6 4.3331 -2.5036 -0.0013 9 6 2.1981 -1.1973 -0.0005 10 6 1.4441 -2.5021 -0.0005 11 7 1.1987 -2.9258 -1.3856 12 6 0.4645 -4.1976 -1.4248 13 6 1.4529 -5.3606 -1.3128 14 6 0.6812 -6.6838 -1.3189 15 7 -0.1702 -6.7289 -2.5155 16 6 -0.1044 -7.7897 -3.3789 17 1 0.8140 -8.3492 -3.4781 18 6 -1.2183 -8.1460 -4.1268 19 7 -2.4099 -7.7047 -3.7838 20 14 -1.0260 -9.2515 -5.6201 21 1 -0.4440 -10.5521 -5.2015 22 1 -2.3554 -9.4805 -6.2411 23 1 -0.1256 -8.6006 -6.6054 24 6 -1.0939 -5.6145 -2.7677 25 6 -0.3022 -4.3032 -2.7451 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3635 0.8899 0.5138 29 1 1.6578 2.1324 -0.0040 30 1 5.3525 -0.0022 -0.0005 31 1 4.5140 -2.8182 -1.0292 32 1 5.2858 -2.3739 0.5120 33 1 3.7438 -3.2629 0.5127 34 1 2.0332 -3.2621 0.5129 35 1 0.4919 -2.3715 0.5136 36 1 2.0629 -2.9914 -1.9022 37 1 -0.2383 -4.2369 -0.5926 38 1 2.1405 -5.3363 -2.1582 39 1 2.0152 -5.2718 -0.3833 40 1 0.0598 -6.7488 -0.4256 41 1 1.3824 -7.5181 -1.3376 42 1 -3.1882 -7.9533 -4.3065 43 1 -1.8599 -5.5922 -1.9927 44 1 -1.5642 -5.7405 -3.7429 45 1 -0.9892 -3.4618 -2.8351 46 1 0.4021 -4.2885 -3.5769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611134227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:00 Heat of formation + Delta-G solvation = 25.084847 kcal Electronic energy + Delta-G solvation = -24996.993937 eV Core-core repulsion = 21525.989179 eV Total energy + Delta-G solvation = -3471.004757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18131 -38.06167 -36.82748 -35.19699 -33.86552 -32.87154 -31.39923 -30.02936 -29.20577 -27.64742 -27.03836 -25.41520 -24.02630 -22.11825 -21.37478 -21.04892 -20.93204 -19.22552 -16.96584 -16.58272 -16.51835 -15.38222 -15.18714 -14.80491 -14.40085 -14.03032 -13.85625 -13.57753 -13.48302 -13.37643 -13.24517 -13.01285 -12.94407 -12.80499 -12.71148 -12.64923 -12.13640 -11.73083 -11.53736 -11.42953 -11.19754 -11.11501 -11.02161 -10.92070 -10.76560 -10.70847 -10.24974 -10.23068 -9.98416 -9.71703 -9.49340 -8.84210 -8.69932 -8.47815 -8.05632 -6.66548 -5.78274 -3.20757 0.93893 1.07435 1.90762 3.33383 3.38543 3.44427 3.45649 4.42287 4.50024 4.50269 4.54558 4.77452 4.88395 4.98125 5.09549 5.28379 5.28811 5.36857 5.42109 5.44292 5.48899 5.50943 5.59087 5.63994 5.70736 5.71870 5.85808 5.90447 5.99002 6.05582 6.08722 6.18299 6.30146 6.45628 6.48372 6.58695 6.62289 6.65695 6.69644 6.84499 6.93650 7.30794 7.38469 7.60729 7.69594 7.80060 8.46245 9.22364 9.85704 10.42527 11.30252 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027019 B = 0.002415 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.074434 B =11591.126383 C =11905.624601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.122 4.122 4 C -0.028 4.028 5 Cl -0.079 7.079 6 C -0.121 4.121 7 C -0.063 4.063 8 C -0.121 4.121 9 C -0.075 4.075 10 C 0.090 3.910 11 N -0.678 5.678 12 C 0.096 3.904 13 C -0.159 4.159 14 C 0.150 3.850 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.124 4.124 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.337 0.663 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.015 0.985 41 H 0.051 0.949 42 H 0.254 0.746 43 H 0.016 0.984 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.950 17.531 9.860 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.047 4.047 3 C -0.140 4.140 4 C -0.055 4.055 5 Cl -0.050 7.050 6 C -0.139 4.139 7 C -0.064 4.064 8 C -0.177 4.177 9 C -0.076 4.076 10 C -0.038 4.038 11 N -0.307 5.307 12 C -0.013 4.013 13 C -0.200 4.200 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.081 0.919 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.045 3.955 25 C -0.164 4.164 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.155 0.845 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.274 17.993 9.712 22.883 hybrid contribution 0.952 -0.934 -0.514 1.429 sum 11.226 17.060 9.199 22.398 Atomic orbital electron populations 1.20850 0.90192 1.02626 1.03384 1.19696 0.96561 0.91444 0.96966 1.20879 0.91805 0.98630 1.02708 1.20835 0.92402 0.86800 1.05420 1.98361 1.76865 1.32731 1.97018 1.20821 1.00082 0.90222 1.02825 1.19716 0.93153 0.94949 0.98547 1.20910 0.99868 0.93960 1.02993 1.19687 0.92597 0.95162 1.00128 1.21002 0.99077 0.91931 0.91811 1.60802 1.26333 1.32473 1.11109 1.21559 0.94868 0.85421 0.99483 1.22688 0.98773 0.98730 0.99829 1.20804 0.93060 0.93799 0.90099 1.44053 1.44831 1.19849 1.22735 1.19126 0.95101 1.07684 1.16393 0.91879 1.25039 0.94856 0.98992 1.00704 1.70015 0.97380 1.48222 1.39081 0.86380 0.76716 0.80499 0.83227 1.20923 1.21618 1.21040 1.20796 0.90054 0.83017 1.01663 1.22170 0.99103 0.99808 0.95292 0.90042 0.90737 0.91901 0.85174 0.85247 0.90586 0.91346 0.90729 0.93981 0.89926 0.84511 0.91292 0.92248 0.93712 0.96674 0.93004 0.93574 0.96565 0.89416 0.92744 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.60 36.00 0.35 -0.73 16 2 C -0.05 -0.49 5.88 -104.63 -0.62 -1.10 16 3 C -0.12 -1.24 9.49 -39.55 -0.38 -1.62 16 4 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 5 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 6 C -0.12 -1.21 9.49 -39.55 -0.38 -1.59 16 7 C -0.06 -0.64 5.88 -104.63 -0.62 -1.26 16 8 C -0.12 -1.05 9.60 36.00 0.35 -0.70 16 9 C -0.08 -0.83 5.39 -104.62 -0.56 -1.39 16 10 C 0.09 1.03 4.79 -4.97 -0.02 1.00 16 11 N -0.68 -9.01 6.24 -107.95 -0.67 -9.68 16 12 C 0.10 1.52 2.43 -67.67 -0.16 1.36 16 13 C -0.16 -2.61 5.33 -26.62 -0.14 -2.75 16 14 C 0.15 3.06 6.52 -3.72 -0.02 3.04 16 15 N -0.59 -14.63 2.99 -172.32 -0.52 -15.15 16 16 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 17 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 18 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 20 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 25 C -0.12 -2.34 5.69 -26.61 -0.15 -2.49 16 26 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 27 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.07 0.66 5.95 -51.93 -0.31 0.35 16 34 H 0.04 0.47 5.22 -51.93 -0.27 0.20 16 35 H 0.08 0.94 5.86 -51.93 -0.30 0.63 16 36 H 0.34 4.46 8.47 -39.29 -0.33 4.13 16 37 H 0.07 1.14 7.80 -51.93 -0.40 0.73 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.63 7.42 -51.93 -0.39 0.24 16 40 H 0.02 0.32 8.14 -51.92 -0.42 -0.11 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.33 6.07 -51.93 -0.31 2.02 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -28.66 372.63 -11.58 -40.24 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.24 Total: 1.94 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.86 Total: -11.84 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.57 Total: -50.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.66 -11.58 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611134227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.327 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds