Wall clock time and date at job start Tue Mar 31 2020 13:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46784 * 2 1 4 4 C 1.52994 * 109.47086 * 240.00029 * 2 1 3 5 5 O 1.42902 * 109.46990 * 119.99739 * 2 1 3 6 6 C 1.42896 * 113.99886 * 60.00405 * 5 2 1 7 7 C 1.53004 * 109.47113 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47316 * 179.97438 * 7 6 5 9 9 O 1.45194 * 109.47082 * 180.02562 * 8 7 6 10 10 C 1.34765 * 116.99702 * 180.02562 * 9 8 7 11 11 O 1.21506 * 120.00237 * 359.97438 * 10 9 8 12 12 C 1.47395 * 119.99623 * 179.97438 * 10 9 8 13 13 C 1.39734 * 120.20534 * 0.02562 * 12 10 9 14 14 C 1.37806 * 119.91198 * 180.02562 * 13 12 10 15 15 C 1.38588 * 120.33558 * 359.97438 * 14 13 12 16 16 C 1.38028 * 120.40874 * 0.02562 * 15 14 13 17 17 C 1.38823 * 120.08297 * 0.02562 * 16 15 14 18 18 O 1.35508 * 120.16898 * 180.02562 * 17 16 15 19 19 C 1.34810 * 116.99710 * 354.39018 * 18 17 16 20 20 H 1.07997 * 120.00078 * 5.05946 * 19 18 17 21 21 C 1.38703 * 119.99974 * 185.05742 * 19 18 17 22 22 N 1.31514 * 119.99875 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99874 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47316 * 90.00066 * 23 21 19 25 25 H 1.48501 * 109.47207 * 209.99775 * 23 21 19 26 26 H 1.48494 * 109.47176 * 330.00011 * 23 21 19 27 27 H 1.09000 * 109.47199 * 299.99975 * 1 2 3 28 28 H 1.08998 * 109.46900 * 60.00312 * 1 2 3 29 29 H 1.08999 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46980 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46878 * 299.99545 * 3 2 1 32 32 H 1.09002 * 109.47733 * 59.99946 * 3 2 1 33 33 H 1.08999 * 109.47240 * 299.99623 * 4 2 1 34 34 H 1.09007 * 109.47203 * 59.99512 * 4 2 1 35 35 H 1.08998 * 109.47136 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47228 * 59.99272 * 6 5 2 37 37 H 1.09005 * 109.47015 * 299.99599 * 6 5 2 38 38 H 1.09005 * 109.46642 * 59.99720 * 7 6 5 39 39 H 1.08991 * 109.46787 * 299.99872 * 7 6 5 40 40 H 1.08999 * 109.47063 * 59.99465 * 8 7 6 41 41 H 1.09005 * 109.46978 * 299.99916 * 8 7 6 42 42 H 1.07995 * 120.04158 * 359.97438 * 13 12 10 43 43 H 1.08001 * 119.82948 * 179.97438 * 14 13 12 44 44 H 1.07992 * 119.79703 * 179.74492 * 15 14 13 45 45 H 1.08006 * 119.95539 * 179.97438 * 16 15 14 46 46 H 0.97006 * 119.99680 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5848 -2.0354 1.2645 7 6 2.1507 -2.6539 2.5445 8 6 1.6988 -4.1119 2.6495 9 8 2.2352 -4.6986 3.8644 10 6 1.9287 -5.9880 4.1082 11 8 1.2318 -6.6050 3.3271 12 6 2.4388 -6.6499 5.3224 13 6 3.2401 -5.9443 6.2237 14 6 3.7143 -6.5692 7.3568 15 6 3.4000 -7.8954 7.6081 16 6 2.6096 -8.6052 6.7269 17 6 2.1236 -7.9930 5.5797 18 8 1.3470 -8.6880 4.7137 19 6 1.1779 -10.0022 4.9624 20 1 1.5835 -10.4377 5.8636 21 6 0.4831 -10.7949 4.0609 22 7 0.3186 -12.0770 4.3034 23 14 -0.2178 -10.0417 2.5019 24 1 0.7913 -10.1237 1.4155 25 1 -1.4396 -10.7836 2.0996 26 1 -0.5622 -8.6189 2.7510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 1.9492 -2.5915 0.4008 37 1 0.4959 -2.0777 1.2908 38 1 1.7865 -2.0979 3.4084 39 1 3.2394 -2.6117 2.5178 40 1 2.0625 -4.6681 1.7855 41 1 0.6098 -4.1537 2.6763 42 1 3.4883 -4.9108 6.0323 43 1 4.3339 -6.0227 8.0523 44 1 3.7797 -8.3777 8.4966 45 1 2.3696 -9.6385 6.9298 46 1 -0.1676 -12.6313 3.6731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757057994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:00 Heat of formation + Delta-G solvation = -144.662708 kcal Electronic energy + Delta-G solvation = -26685.785271 eV Core-core repulsion = 22734.417791 eV Total energy + Delta-G solvation = -3951.367479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.06503 -39.39824 -38.85023 -36.63689 -36.01573 -34.38315 -32.54289 -32.23078 -30.71827 -29.26889 -27.95495 -27.76890 -26.02593 -25.32152 -23.46700 -21.74914 -21.41933 -20.48755 -20.19857 -18.00662 -17.73811 -16.99220 -16.72404 -16.56129 -15.89417 -15.60903 -15.25897 -14.77351 -14.62118 -14.32842 -14.04244 -13.93413 -13.78986 -13.61346 -13.32410 -12.92972 -12.69255 -12.41830 -12.41038 -12.40306 -12.22152 -12.10954 -11.88863 -11.84900 -11.53380 -11.46816 -11.29180 -11.19621 -10.85634 -10.78409 -10.73242 -10.22723 -10.13535 -9.88141 -9.77151 -9.41489 -8.96709 -8.46140 -7.56872 -6.55189 -4.20353 1.43121 2.16057 2.83182 3.23243 3.26373 3.31622 3.56657 3.57579 4.26989 4.41686 4.43937 4.46771 4.64517 4.65188 4.74497 4.91501 4.98459 5.00996 5.07962 5.14968 5.22447 5.22922 5.34971 5.36764 5.42791 5.45208 5.46865 5.49186 5.54044 5.67264 5.69779 5.85523 5.86339 5.90047 5.94848 6.00726 6.04431 6.35261 6.52527 6.79507 6.82958 6.99059 7.04913 7.10619 7.42949 7.62343 7.86480 8.47167 8.79380 9.40519 10.49631 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.002753 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.119094 B =10167.793386 C =11976.517217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.375 6.375 6 C 0.061 3.939 7 C -0.116 4.116 8 C 0.072 3.928 9 O -0.361 6.361 10 C 0.506 3.494 11 O -0.494 6.494 12 C -0.216 4.216 13 C -0.017 4.017 14 C -0.225 4.225 15 C -0.043 4.043 16 C -0.229 4.229 17 C 0.203 3.797 18 O -0.167 6.167 19 C -0.396 4.396 20 H 0.111 0.889 21 C 0.072 3.928 22 N -0.865 5.865 23 Si 0.900 3.100 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.240 1.240 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.141 0.859 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 21.960 -5.557 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.067 3.933 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.295 6.295 6 C -0.016 4.016 7 C -0.154 4.154 8 C -0.002 4.002 9 O -0.280 6.280 10 C 0.352 3.648 11 O -0.382 6.382 12 C -0.219 4.219 13 C -0.036 4.036 14 C -0.244 4.244 15 C -0.061 4.061 16 C -0.248 4.248 17 C 0.146 3.854 18 O -0.067 6.067 19 C -0.471 4.471 20 H 0.128 0.872 21 C -0.134 4.134 22 N -0.500 5.500 23 Si 0.724 3.276 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.163 1.163 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.145 0.855 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.158 0.842 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.186 21.695 -5.995 22.732 hybrid contribution -0.554 -0.233 -0.879 1.065 sum 2.632 21.462 -6.874 22.689 Atomic orbital electron populations 1.22452 0.95706 1.02759 1.02862 1.21499 0.93176 0.93193 0.85401 1.21755 1.01993 0.93252 1.02446 1.22450 1.02309 1.01195 0.97828 1.87939 1.74569 1.23845 1.43124 1.22326 0.98722 0.82991 0.97546 1.21362 1.02815 0.93309 0.97892 1.22661 0.98862 0.92660 0.86049 1.86493 1.70727 1.28024 1.42751 1.21070 0.78360 0.79190 0.86148 1.90909 1.35532 1.64474 1.47292 1.18047 1.12900 0.93017 0.97887 1.20980 0.92144 0.98509 0.91944 1.20626 1.07936 0.95857 1.00018 1.21042 0.94042 0.93845 0.97199 1.21238 1.05160 1.02227 0.96146 1.18988 0.87833 0.89535 0.89092 1.83750 1.55252 1.22714 1.44935 1.20946 1.37017 0.79789 1.09355 0.87210 1.24509 0.95551 0.94351 0.98966 1.69632 1.38645 1.04466 1.37304 0.86210 0.78424 0.81563 0.81379 1.19828 1.21035 1.16296 0.91616 0.91504 0.92014 0.91763 0.91181 0.91760 0.92009 0.91508 0.91610 0.92699 0.92699 0.90011 0.90000 0.91375 0.91387 0.85492 0.86676 0.86587 0.84162 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 8.25 37.16 0.31 -1.02 16 2 C 0.11 0.88 1.14 -90.62 -0.10 0.77 16 3 C -0.14 -0.94 8.84 37.16 0.33 -0.61 16 4 C -0.18 -1.33 8.25 37.15 0.31 -1.02 16 5 O -0.37 -3.98 9.99 -35.23 -0.35 -4.33 16 6 C 0.06 0.61 5.14 37.16 0.19 0.80 16 7 C -0.12 -1.30 5.96 -26.73 -0.16 -1.46 16 8 C 0.07 1.02 5.48 37.16 0.20 1.22 16 9 O -0.36 -6.22 9.47 -40.67 -0.39 -6.60 16 10 C 0.51 10.69 7.89 34.46 0.27 10.96 16 11 O -0.49 -12.12 14.96 -26.59 -0.40 -12.52 16 12 C -0.22 -4.52 5.89 -104.82 -0.62 -5.14 16 13 C -0.02 -0.30 9.61 -39.18 -0.38 -0.67 16 14 C -0.23 -3.56 10.02 -39.61 -0.40 -3.96 16 15 C -0.04 -0.72 10.03 -39.53 -0.40 -1.12 16 16 C -0.23 -4.76 9.16 -39.44 -0.36 -5.12 16 17 C 0.20 4.78 6.66 -38.58 -0.26 4.52 16 18 O -0.17 -4.52 6.67 -21.01 -0.14 -4.66 16 19 C -0.40 -11.14 9.95 30.90 0.31 -10.83 16 20 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 21 C 0.07 2.04 5.49 -17.52 -0.10 1.95 16 22 N -0.87 -24.71 13.96 55.48 0.77 -23.94 16 23 Si 0.90 22.69 28.62 -169.99 -4.86 17.82 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.24 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.52 6.42 -51.93 -0.33 0.18 16 37 H 0.05 0.52 6.42 -51.93 -0.33 0.18 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.13 1.84 7.61 -52.49 -0.40 1.44 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.14 3.00 5.64 -52.48 -0.30 2.70 16 46 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -31.60 381.32 -7.42 -39.03 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.96 Total: 0.19 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.85 Total: -10.73 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.77 Total: -23.94 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.27 Total: -28.12 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.86 Total: 17.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.60 -7.42 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757057994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.634 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds