Wall clock time and date at job start Tue Mar 31 2020 13:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46784 * 2 1 4 4 C 1.52994 * 109.47086 * 240.00029 * 2 1 3 5 5 O 1.42902 * 109.46990 * 119.99739 * 2 1 3 6 6 C 1.42896 * 113.99886 * 60.00405 * 5 2 1 7 7 C 1.53004 * 109.47113 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47316 * 179.97438 * 7 6 5 9 9 O 1.45194 * 109.47082 * 180.02562 * 8 7 6 10 10 C 1.34765 * 116.99702 * 180.02562 * 9 8 7 11 11 O 1.21506 * 120.00237 * 359.97438 * 10 9 8 12 12 C 1.47395 * 119.99623 * 179.97438 * 10 9 8 13 13 C 1.39734 * 120.20534 * 0.02562 * 12 10 9 14 14 C 1.37806 * 119.91198 * 180.02562 * 13 12 10 15 15 C 1.38588 * 120.33558 * 359.97438 * 14 13 12 16 16 C 1.38028 * 120.40874 * 0.02562 * 15 14 13 17 17 C 1.38823 * 120.08297 * 0.02562 * 16 15 14 18 18 O 1.35508 * 120.16898 * 180.02562 * 17 16 15 19 19 C 1.34810 * 116.99710 * 354.39018 * 18 17 16 20 20 H 1.07997 * 120.00078 * 5.05946 * 19 18 17 21 21 C 1.38703 * 119.99974 * 185.05742 * 19 18 17 22 22 N 1.31514 * 119.99875 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99874 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47316 * 90.00066 * 23 21 19 25 25 H 1.48501 * 109.47207 * 209.99775 * 23 21 19 26 26 H 1.48494 * 109.47176 * 330.00011 * 23 21 19 27 27 H 1.09000 * 109.47199 * 299.99975 * 1 2 3 28 28 H 1.08998 * 109.46900 * 60.00312 * 1 2 3 29 29 H 1.08999 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46980 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46878 * 299.99545 * 3 2 1 32 32 H 1.09002 * 109.47733 * 59.99946 * 3 2 1 33 33 H 1.08999 * 109.47240 * 299.99623 * 4 2 1 34 34 H 1.09007 * 109.47203 * 59.99512 * 4 2 1 35 35 H 1.08998 * 109.47136 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47228 * 59.99272 * 6 5 2 37 37 H 1.09005 * 109.47015 * 299.99599 * 6 5 2 38 38 H 1.09005 * 109.46642 * 59.99720 * 7 6 5 39 39 H 1.08991 * 109.46787 * 299.99872 * 7 6 5 40 40 H 1.08999 * 109.47063 * 59.99465 * 8 7 6 41 41 H 1.09005 * 109.46978 * 299.99916 * 8 7 6 42 42 H 1.07995 * 120.04158 * 359.97438 * 13 12 10 43 43 H 1.08001 * 119.82948 * 179.97438 * 14 13 12 44 44 H 1.07992 * 119.79703 * 179.74492 * 15 14 13 45 45 H 1.08006 * 119.95539 * 179.97438 * 16 15 14 46 46 H 0.97006 * 119.99680 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5848 -2.0354 1.2645 7 6 2.1507 -2.6539 2.5445 8 6 1.6988 -4.1119 2.6495 9 8 2.2352 -4.6986 3.8644 10 6 1.9287 -5.9880 4.1082 11 8 1.2318 -6.6050 3.3271 12 6 2.4388 -6.6499 5.3224 13 6 3.2401 -5.9443 6.2237 14 6 3.7143 -6.5692 7.3568 15 6 3.4000 -7.8954 7.6081 16 6 2.6096 -8.6052 6.7269 17 6 2.1236 -7.9930 5.5797 18 8 1.3470 -8.6880 4.7137 19 6 1.1779 -10.0022 4.9624 20 1 1.5835 -10.4377 5.8636 21 6 0.4831 -10.7949 4.0609 22 7 0.3186 -12.0770 4.3034 23 14 -0.2178 -10.0417 2.5019 24 1 0.7913 -10.1237 1.4155 25 1 -1.4396 -10.7836 2.0996 26 1 -0.5622 -8.6189 2.7510 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 1.9492 -2.5915 0.4008 37 1 0.4959 -2.0777 1.2908 38 1 1.7865 -2.0979 3.4084 39 1 3.2394 -2.6117 2.5178 40 1 2.0625 -4.6681 1.7855 41 1 0.6098 -4.1537 2.6763 42 1 3.4883 -4.9108 6.0323 43 1 4.3339 -6.0227 8.0523 44 1 3.7797 -8.3777 8.4966 45 1 2.3696 -9.6385 6.9298 46 1 -0.1676 -12.6313 3.6731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757057994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:00 Heat of formation + Delta-G solvation = -161.977944 kcal Electronic energy + Delta-G solvation = -26686.536116 eV Core-core repulsion = 22734.417791 eV Total energy + Delta-G solvation = -3952.118324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67557 -40.56249 -40.04988 -38.28191 -37.54354 -35.22212 -34.56453 -33.20862 -32.19413 -30.86988 -28.56514 -28.33206 -27.50468 -26.84678 -24.90504 -23.21619 -22.57587 -21.96792 -20.93181 -19.90854 -19.39435 -18.48933 -17.75968 -17.74100 -17.25570 -16.64695 -16.57546 -16.04129 -15.88813 -15.82343 -15.48678 -15.37890 -15.30519 -14.51996 -14.49004 -14.33217 -14.09795 -14.00379 -13.56064 -13.27629 -13.11734 -12.96801 -12.89086 -12.71664 -12.70239 -12.65796 -12.61243 -12.47510 -12.37522 -12.05564 -12.02734 -11.68479 -11.52697 -11.39924 -11.18595 -10.99994 -10.49530 -9.98579 -9.23543 -8.61022 -6.30777 -0.13130 0.60771 1.23639 1.28339 1.53182 1.54800 1.65092 2.26027 2.68661 2.70678 2.91254 3.07856 3.77726 3.78562 3.87499 3.91196 3.94539 4.02922 4.08321 4.15426 4.20944 4.26734 4.37309 4.40863 4.46080 4.57687 4.61442 4.66598 4.76743 4.79126 4.83862 4.93084 4.93117 4.97539 5.01465 5.07221 5.15233 5.25532 5.33315 5.33991 5.36463 5.48169 5.57812 5.67700 5.80003 6.10282 6.28267 6.73966 6.86792 7.49753 8.48918 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.002753 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.119094 B =10167.793386 C =11976.517217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.097 3.903 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.392 6.392 6 C 0.063 3.937 7 C -0.103 4.103 8 C 0.067 3.933 9 O -0.349 6.349 10 C 0.507 3.493 11 O -0.535 6.535 12 C -0.227 4.227 13 C -0.012 4.012 14 C -0.193 4.193 15 C -0.028 4.028 16 C -0.250 4.250 17 C 0.170 3.830 18 O -0.208 6.208 19 C -0.405 4.405 20 H 0.096 0.904 21 C 0.028 3.972 22 N -0.907 5.907 23 Si 0.953 3.047 24 H -0.274 1.274 25 H -0.264 1.264 26 H -0.265 1.265 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.158 0.842 45 H 0.123 0.877 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 25.393 -4.652 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.058 3.942 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.312 6.312 6 C -0.014 4.014 7 C -0.141 4.141 8 C -0.007 4.007 9 O -0.266 6.266 10 C 0.355 3.645 11 O -0.426 6.426 12 C -0.229 4.229 13 C -0.030 4.030 14 C -0.211 4.211 15 C -0.046 4.046 16 C -0.269 4.269 17 C 0.116 3.884 18 O -0.112 6.112 19 C -0.480 4.480 20 H 0.114 0.886 21 C -0.173 4.173 22 N -0.546 5.546 23 Si 0.776 3.224 24 H -0.200 1.200 25 H -0.188 1.188 26 H -0.189 1.189 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.180 0.820 43 H 0.186 0.814 44 H 0.176 0.824 45 H 0.141 0.859 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.932 25.182 -5.064 26.155 hybrid contribution -0.819 -0.891 -0.936 1.530 sum 4.113 24.291 -6.001 25.357 Atomic orbital electron populations 1.22446 0.95108 1.02610 1.03490 1.21753 0.93772 0.93745 0.84899 1.21781 1.01798 0.92470 1.03261 1.22444 1.02051 1.01022 0.98147 1.87905 1.75007 1.23832 1.44448 1.22262 0.98950 0.83158 0.96991 1.21255 1.02984 0.91039 0.98787 1.22938 0.98884 0.94206 0.84691 1.86463 1.70220 1.25928 1.44027 1.21251 0.77448 0.80045 0.85782 1.90898 1.37357 1.65718 1.48669 1.18462 1.13319 0.92355 0.98786 1.21457 0.90385 0.99881 0.91233 1.21288 1.05456 0.95073 0.99311 1.21550 0.91577 0.94353 0.97154 1.21323 1.06816 1.02108 0.96663 1.19669 0.88344 0.90678 0.89671 1.83734 1.58574 1.21973 1.46933 1.20914 1.37167 0.80930 1.09026 0.88627 1.25058 0.96415 0.94789 1.01085 1.69675 1.41119 1.05147 1.38626 0.85456 0.78507 0.79427 0.78975 1.19965 1.18848 1.18936 0.91996 0.89898 0.92543 0.92095 0.89261 0.92078 0.92542 0.89901 0.92007 0.92257 0.92234 0.89616 0.89627 0.91570 0.91573 0.81988 0.81389 0.82443 0.85922 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.25 71.99 0.59 -1.75 16 2 C 0.10 1.44 1.14 -10.79 -0.01 1.42 16 3 C -0.14 -1.61 8.84 71.98 0.64 -0.97 16 4 C -0.18 -2.35 8.25 71.98 0.59 -1.76 16 5 O -0.39 -7.74 9.99 -148.98 -1.49 -9.23 16 6 C 0.06 1.18 5.14 71.98 0.37 1.55 16 7 C -0.10 -2.13 5.96 30.59 0.18 -1.95 16 8 C 0.07 1.83 5.48 71.98 0.39 2.22 16 9 O -0.35 -11.49 9.47 -56.76 -0.54 -12.03 16 10 C 0.51 21.36 7.89 70.23 0.55 21.92 16 11 O -0.54 -27.11 14.96 26.81 0.40 -26.71 16 12 C -0.23 -9.27 5.89 -20.00 -0.12 -9.39 16 13 C -0.01 -0.35 9.61 22.53 0.22 -0.13 16 14 C -0.19 -4.93 10.02 22.25 0.22 -4.71 16 15 C -0.03 -0.85 10.03 22.30 0.22 -0.62 16 16 C -0.25 -10.36 9.16 22.36 0.20 -10.16 16 17 C 0.17 8.14 6.66 22.92 0.15 8.29 16 18 O -0.21 -11.90 6.67 1.02 0.01 -11.89 16 19 C -0.40 -24.15 9.95 67.93 0.68 -23.47 16 20 H 0.10 5.74 5.44 -2.91 -0.02 5.72 16 21 C 0.03 1.64 5.49 84.85 0.47 2.10 16 22 N -0.91 -54.31 13.96 21.62 0.30 -54.00 16 23 Si 0.95 49.32 28.62 68.60 1.96 51.28 16 24 H -0.27 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.26 -14.64 7.11 99.48 0.71 -13.93 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.79 6.54 -2.39 -0.02 0.77 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.79 6.54 -2.39 -0.02 0.77 16 34 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 1.05 6.42 -2.39 -0.02 1.04 16 37 H 0.06 1.06 6.42 -2.38 -0.02 1.04 16 38 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.16 3.75 7.61 -2.91 -0.02 3.73 16 43 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 45 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16 46 H 0.29 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -73.77 381.32 6.98 -66.79 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.97 Total: 13.19 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 5.36 Total: -17.40 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.30 Total: -54.00 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -1.62 Total: -59.86 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.96 Total: 51.28 kcal Total: -73.77 6.98 -66.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757057994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.188 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds