Wall clock time and date at job start Tue Mar 31 2020 13:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27489 * 124.86441 * 2 1 4 4 N 1.38791 * 116.83607 * 180.20266 * 3 2 1 5 5 C 1.35163 * 113.43513 * 359.56239 * 4 3 2 6 6 N 1.32313 * 108.84922 * 180.23481 * 5 4 3 7 7 C 1.33823 * 109.09455 * 0.02562 * 6 5 4 8 8 C 1.50706 * 125.82509 * 179.97438 * 7 6 5 9 9 C 1.34475 * 108.35295 * 359.97438 * 7 6 5 10 10 C 1.50701 * 126.42265 * 179.97438 * 9 7 6 11 11 N 1.46896 * 109.46714 * 270.03295 * 10 9 7 12 12 C 1.46898 * 111.00126 * 190.00237 * 11 10 9 13 13 C 1.50700 * 109.47597 * 155.69315 * 12 11 10 14 14 H 1.07999 * 119.99896 * 3.21611 * 13 12 11 15 15 C 1.37873 * 120.00437 * 183.21887 * 13 12 11 16 16 N 1.31522 * 119.99675 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00348 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47019 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47247 * 119.99660 * 17 15 13 20 20 H 1.48498 * 109.47163 * 239.99624 * 17 15 13 21 21 C 1.46898 * 110.99945 * 66.05185 * 11 10 9 22 22 C 1.53002 * 109.47370 * 196.60629 * 21 11 10 23 23 C 1.52995 * 109.47066 * 61.10882 * 22 21 11 24 24 C 1.52999 * 109.47224 * 181.11242 * 22 21 11 25 25 S 1.75764 * 124.87043 * 179.75345 * 2 1 3 26 26 H 1.09003 * 109.46461 * 180.26581 * 1 2 3 27 27 H 1.08996 * 109.47492 * 300.26754 * 1 2 3 28 28 H 1.08997 * 109.46881 * 60.27260 * 1 2 3 29 29 H 1.08997 * 109.46862 * 90.02352 * 8 7 6 30 30 H 1.08991 * 109.47365 * 210.02643 * 8 7 6 31 31 H 1.09007 * 109.46962 * 330.03034 * 8 7 6 32 32 H 1.09000 * 109.47347 * 30.03589 * 10 9 7 33 33 H 1.09002 * 109.46578 * 150.04028 * 10 9 7 34 34 H 1.09006 * 109.47303 * 275.69632 * 12 11 10 35 35 H 1.09007 * 109.46791 * 35.69102 * 12 11 10 36 36 H 0.96999 * 119.99441 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47426 * 316.60641 * 21 11 10 38 38 H 1.09000 * 109.47441 * 76.60353 * 21 11 10 39 39 H 1.09001 * 109.47097 * 301.11026 * 22 21 11 40 40 H 1.08998 * 109.47097 * 60.00889 * 23 22 21 41 41 H 1.08999 * 109.47147 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47496 * 300.00341 * 23 22 21 43 43 H 1.09001 * 109.47172 * 59.99865 * 24 22 21 44 44 H 1.09001 * 109.46947 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47417 * 300.00010 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2358 1.0461 0.0000 4 7 3.6101 0.8522 -0.0044 5 6 3.9692 -0.4508 0.0014 6 7 5.2900 -0.5302 0.0017 7 6 5.8029 0.7058 -0.0032 8 6 7.2696 1.0522 -0.0040 9 6 4.7863 1.5861 -0.0073 10 6 4.9036 3.0885 -0.0130 11 7 4.9415 3.5818 1.3701 12 6 4.8169 5.0449 1.4108 13 6 4.2706 5.4655 2.7509 14 1 4.0880 4.7255 3.5160 15 6 4.0037 6.7950 3.0001 16 7 4.2265 7.6963 2.0685 17 14 3.3259 7.3163 4.6609 18 1 3.1664 6.1211 5.5277 19 1 4.2663 8.2702 5.3021 20 1 2.0069 7.9721 4.4734 21 6 6.1638 3.1384 2.0538 22 6 5.9904 3.3013 3.5653 23 6 4.8239 2.4332 4.0412 24 6 7.2735 2.8656 4.2757 25 16 2.5119 -1.4420 0.0062 26 1 -0.3632 -1.0277 0.0048 27 1 -0.3634 0.5179 0.8875 28 1 -0.3633 0.5096 -0.8924 29 1 7.6235 1.1319 -1.0319 30 1 7.4185 2.0037 0.5063 31 1 7.8276 0.2714 0.5129 32 1 5.8192 3.3795 -0.5278 33 1 4.0446 3.5180 -0.5285 34 1 5.7970 5.4975 1.2597 35 1 4.1394 5.3739 0.6227 36 1 4.0391 8.6317 2.2440 37 1 6.3509 2.0903 1.8205 38 1 7.0073 3.7416 1.7178 39 1 5.7838 4.3462 3.7968 40 1 5.0306 1.3883 3.8098 41 1 4.7007 2.5488 5.1180 42 1 3.9098 2.7436 3.5351 43 1 8.1045 3.4840 3.9366 44 1 7.1501 2.9820 5.3524 45 1 7.4802 1.8207 4.0442 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768153419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:13 Heat of formation + Delta-G solvation = 124.720779 kcal Electronic energy + Delta-G solvation = -26135.872099 eV Core-core repulsion = 22703.524337 eV Total energy + Delta-G solvation = -3432.347762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.45004 -38.25595 -37.38035 -33.89982 -32.97298 -32.68389 -30.98883 -29.73037 -27.57355 -26.94703 -26.43565 -25.43862 -24.05886 -23.12104 -21.06923 -20.28352 -20.06188 -19.07596 -18.40450 -16.48792 -16.40288 -16.02289 -15.16823 -14.64869 -14.55415 -14.46734 -14.20021 -13.80945 -13.55670 -13.19235 -13.09020 -13.04232 -12.80774 -12.56440 -12.33730 -12.20018 -12.02112 -11.78220 -11.72875 -11.50765 -11.28472 -11.00319 -10.80165 -10.62424 -10.48709 -10.39934 -10.20328 -10.10867 -9.99231 -9.86600 -9.38128 -9.05142 -9.01519 -8.39183 -7.85866 -7.27308 -6.02034 -4.00434 0.46067 0.82298 1.16747 1.85912 2.04808 2.82865 3.29930 3.38049 3.42732 3.97063 4.42387 4.47591 4.80137 4.91298 4.95859 5.06852 5.22159 5.32636 5.42984 5.45100 5.54176 5.63429 5.72711 5.74885 5.87852 5.92372 5.99745 6.04922 6.11940 6.23242 6.30622 6.35166 6.45438 6.54225 6.60490 6.69968 6.80832 7.15186 7.21098 7.26812 7.37081 7.41541 7.72660 7.85755 8.08975 8.19477 8.51792 9.06446 9.61501 11.08483 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.004492 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.448185 B = 6231.705084 C = 7209.427289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.087 3.913 3 N -0.224 5.224 4 N -0.296 5.296 5 C 0.094 3.906 6 N -0.434 5.434 7 C 0.031 3.969 8 C -0.076 4.076 9 C 0.065 3.935 10 C 0.124 3.876 11 N -0.527 5.527 12 C 0.194 3.806 13 C -0.500 4.500 14 H 0.078 0.922 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.891 3.109 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.063 3.937 22 C -0.105 4.105 23 C -0.126 4.126 24 C -0.143 4.143 25 S 0.146 5.854 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.083 0.917 34 H -0.005 1.005 35 H 0.027 0.973 36 H 0.259 0.741 37 H 0.064 0.936 38 H 0.024 0.976 39 H 0.112 0.888 40 H 0.029 0.971 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 -16.455 -4.714 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.212 4.212 3 N -0.036 5.036 4 N -0.072 5.072 5 C -0.274 4.274 6 N -0.159 5.159 7 C -0.102 4.102 8 C -0.133 4.133 9 C -0.052 4.052 10 C -0.005 4.005 11 N -0.252 5.252 12 C 0.069 3.931 13 C -0.539 4.539 14 H 0.096 0.904 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.065 4.065 22 C -0.124 4.124 23 C -0.183 4.183 24 C -0.201 4.201 25 S 0.380 5.620 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.013 0.987 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.130 0.870 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.133 -17.353 -4.494 18.197 hybrid contribution 0.230 1.985 0.442 2.046 sum -2.902 -15.368 -4.052 16.156 Atomic orbital electron populations 1.20558 0.81813 1.04841 1.05912 1.28432 1.02334 0.91150 0.99270 1.73744 0.87064 1.24586 1.18187 1.47557 1.01691 1.06151 1.51785 1.26290 0.98290 0.87154 1.15648 1.70383 1.01488 1.24231 1.19787 1.20511 0.96064 0.87001 1.06593 1.20386 0.87256 1.02870 1.02821 1.21254 0.79393 0.95718 1.08788 1.20501 1.01566 0.85223 0.93257 1.62123 1.36685 1.15784 1.10605 1.19822 0.95855 0.79083 0.98340 1.21434 1.41306 0.92267 0.98874 0.90413 1.24992 0.96023 0.96771 0.96908 1.69971 1.49310 1.01501 1.33145 0.86542 0.78638 0.78651 0.84269 1.19586 1.21157 1.21142 1.22311 0.90440 0.98792 0.94978 1.21427 0.93581 1.03646 0.93726 1.21612 1.00152 0.97570 0.99010 1.21833 0.98250 1.00073 0.99972 1.85122 0.89325 1.04144 1.83362 0.88786 0.87906 0.88121 0.90958 0.89654 0.90537 0.92842 0.89886 0.98692 0.95456 0.93105 0.91819 0.95753 0.86999 0.95192 0.94633 0.91051 0.93317 0.93312 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.49 36.01 0.38 -0.07 16 2 C 0.09 1.02 7.58 -14.08 -0.11 0.92 16 3 N -0.22 -3.65 11.97 32.88 0.39 -3.26 16 4 N -0.30 -5.33 4.42 -8.73 -0.04 -5.37 16 5 C 0.09 1.59 9.00 -88.73 -0.80 0.79 16 6 N -0.43 -7.76 11.32 -9.76 -0.11 -7.87 16 7 C 0.03 0.53 6.17 -83.05 -0.51 0.01 16 8 C -0.08 -1.02 9.34 36.01 0.34 -0.68 16 9 C 0.06 1.18 6.20 -80.84 -0.50 0.68 16 10 C 0.12 2.34 5.15 -4.98 -0.03 2.31 16 11 N -0.53 -11.20 3.71 -237.51 -0.88 -12.08 16 12 C 0.19 4.86 4.78 -4.98 -0.02 4.84 16 13 C -0.50 -13.45 7.20 -34.44 -0.25 -13.70 16 14 H 0.08 2.07 4.50 -52.49 -0.24 1.83 16 15 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 16 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.06 1.20 3.01 -3.82 -0.01 1.19 16 22 C -0.11 -2.04 2.39 -90.62 -0.22 -2.26 16 23 C -0.13 -2.45 8.37 37.16 0.31 -2.14 16 24 C -0.14 -2.31 9.19 37.16 0.34 -1.96 16 25 S 0.15 1.72 23.35 -107.50 -2.51 -0.79 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.16 4.94 -51.93 -0.26 0.90 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.92 7.74 -51.93 -0.40 0.52 16 33 H 0.08 1.64 7.80 -51.93 -0.41 1.24 16 34 H 0.00 -0.12 7.68 -51.93 -0.40 -0.52 16 35 H 0.03 0.74 7.65 -51.92 -0.40 0.35 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.06 1.14 4.11 -51.93 -0.21 0.93 16 38 H 0.02 0.47 7.58 -51.93 -0.39 0.07 16 39 H 0.11 2.53 5.13 -51.93 -0.27 2.27 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.57 6.69 -51.93 -0.35 1.23 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -32.71 366.80 -9.76 -42.47 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.68 Total: -0.89 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.18 Total: -8.69 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.10 Total: -54.04 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.51 Total: -0.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.71 -9.76 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.187 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds