Wall clock time and date at job start Tue Mar 31 2020 13:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27489 * 124.86441 * 2 1 4 4 N 1.38791 * 116.83607 * 180.20266 * 3 2 1 5 5 C 1.35163 * 113.43513 * 359.56239 * 4 3 2 6 6 N 1.32313 * 108.84922 * 180.23481 * 5 4 3 7 7 C 1.33823 * 109.09455 * 0.02562 * 6 5 4 8 8 C 1.50706 * 125.82509 * 179.97438 * 7 6 5 9 9 C 1.34475 * 108.35295 * 359.97438 * 7 6 5 10 10 C 1.50701 * 126.42265 * 179.97438 * 9 7 6 11 11 N 1.46896 * 109.46714 * 270.03295 * 10 9 7 12 12 C 1.46898 * 111.00126 * 190.00237 * 11 10 9 13 13 C 1.50700 * 109.47597 * 155.69315 * 12 11 10 14 14 H 1.07999 * 119.99896 * 3.21611 * 13 12 11 15 15 C 1.37873 * 120.00437 * 183.21887 * 13 12 11 16 16 N 1.31522 * 119.99675 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00348 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47019 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47247 * 119.99660 * 17 15 13 20 20 H 1.48498 * 109.47163 * 239.99624 * 17 15 13 21 21 C 1.46898 * 110.99945 * 66.05185 * 11 10 9 22 22 C 1.53002 * 109.47370 * 196.60629 * 21 11 10 23 23 C 1.52995 * 109.47066 * 61.10882 * 22 21 11 24 24 C 1.52999 * 109.47224 * 181.11242 * 22 21 11 25 25 S 1.75764 * 124.87043 * 179.75345 * 2 1 3 26 26 H 1.09003 * 109.46461 * 180.26581 * 1 2 3 27 27 H 1.08996 * 109.47492 * 300.26754 * 1 2 3 28 28 H 1.08997 * 109.46881 * 60.27260 * 1 2 3 29 29 H 1.08997 * 109.46862 * 90.02352 * 8 7 6 30 30 H 1.08991 * 109.47365 * 210.02643 * 8 7 6 31 31 H 1.09007 * 109.46962 * 330.03034 * 8 7 6 32 32 H 1.09000 * 109.47347 * 30.03589 * 10 9 7 33 33 H 1.09002 * 109.46578 * 150.04028 * 10 9 7 34 34 H 1.09006 * 109.47303 * 275.69632 * 12 11 10 35 35 H 1.09007 * 109.46791 * 35.69102 * 12 11 10 36 36 H 0.96999 * 119.99441 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47426 * 316.60641 * 21 11 10 38 38 H 1.09000 * 109.47441 * 76.60353 * 21 11 10 39 39 H 1.09001 * 109.47097 * 301.11026 * 22 21 11 40 40 H 1.08998 * 109.47097 * 60.00889 * 23 22 21 41 41 H 1.08999 * 109.47147 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47496 * 300.00341 * 23 22 21 43 43 H 1.09001 * 109.47172 * 59.99865 * 24 22 21 44 44 H 1.09001 * 109.46947 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47417 * 300.00010 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2358 1.0461 0.0000 4 7 3.6101 0.8522 -0.0044 5 6 3.9692 -0.4508 0.0014 6 7 5.2900 -0.5302 0.0017 7 6 5.8029 0.7058 -0.0032 8 6 7.2696 1.0522 -0.0040 9 6 4.7863 1.5861 -0.0073 10 6 4.9036 3.0885 -0.0130 11 7 4.9415 3.5818 1.3701 12 6 4.8169 5.0449 1.4108 13 6 4.2706 5.4655 2.7509 14 1 4.0880 4.7255 3.5160 15 6 4.0037 6.7950 3.0001 16 7 4.2265 7.6963 2.0685 17 14 3.3259 7.3163 4.6609 18 1 3.1664 6.1211 5.5277 19 1 4.2663 8.2702 5.3021 20 1 2.0069 7.9721 4.4734 21 6 6.1638 3.1384 2.0538 22 6 5.9904 3.3013 3.5653 23 6 4.8239 2.4332 4.0412 24 6 7.2735 2.8656 4.2757 25 16 2.5119 -1.4420 0.0062 26 1 -0.3632 -1.0277 0.0048 27 1 -0.3634 0.5179 0.8875 28 1 -0.3633 0.5096 -0.8924 29 1 7.6235 1.1319 -1.0319 30 1 7.4185 2.0037 0.5063 31 1 7.8276 0.2714 0.5129 32 1 5.8192 3.3795 -0.5278 33 1 4.0446 3.5180 -0.5285 34 1 5.7970 5.4975 1.2597 35 1 4.1394 5.3739 0.6227 36 1 4.0391 8.6317 2.2440 37 1 6.3509 2.0903 1.8205 38 1 7.0073 3.7416 1.7178 39 1 5.7838 4.3462 3.7968 40 1 5.0306 1.3883 3.8098 41 1 4.7007 2.5488 5.1180 42 1 3.9098 2.7436 3.5351 43 1 8.1045 3.4840 3.9366 44 1 7.1501 2.9820 5.3524 45 1 7.4802 1.8207 4.0442 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768153419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:12 Heat of formation + Delta-G solvation = 104.402648 kcal Electronic energy + Delta-G solvation = -26136.753159 eV Core-core repulsion = 22703.524337 eV Total energy + Delta-G solvation = -3433.228822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.67428 -39.59065 -38.80289 -35.43788 -34.79566 -33.91085 -32.42285 -30.69773 -29.27789 -28.39258 -27.88953 -26.76643 -25.64106 -24.43685 -22.80894 -21.50647 -21.17563 -20.62723 -19.67552 -18.41160 -17.73468 -17.20770 -16.80916 -16.45388 -15.90238 -15.67658 -15.41745 -15.13262 -14.88451 -14.53262 -14.31390 -14.16658 -14.08516 -13.85172 -13.80229 -13.38947 -13.30199 -13.25533 -13.12898 -12.83591 -12.76657 -12.71878 -12.62494 -12.26668 -11.93627 -11.76178 -11.71208 -11.59232 -11.43228 -11.30555 -11.12222 -10.89418 -10.51068 -10.18964 -9.12856 -8.91827 -8.14698 -6.19706 -0.57681 -0.22437 0.09762 0.74688 0.86312 1.38590 1.40281 1.52180 1.55631 2.41496 2.85763 3.15738 3.32843 3.63169 3.68703 3.90158 3.98516 4.08370 4.19795 4.28069 4.41599 4.49717 4.60075 4.61532 4.67481 4.74208 4.76018 4.84864 4.87244 4.92018 4.93041 4.98516 5.05544 5.09631 5.12607 5.19190 5.25130 5.37197 5.44390 5.57251 5.74040 5.82495 6.10618 6.22910 6.39051 6.50720 6.57658 6.93738 7.46163 8.95846 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.004492 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.448185 B = 6231.705084 C = 7209.427289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.105 3.895 3 N -0.282 5.282 4 N -0.308 5.308 5 C 0.072 3.928 6 N -0.459 5.459 7 C 0.036 3.964 8 C -0.075 4.075 9 C 0.031 3.969 10 C 0.133 3.867 11 N -0.534 5.534 12 C 0.212 3.788 13 C -0.503 4.503 14 H 0.080 0.920 15 C 0.002 3.998 16 N -0.936 5.936 17 Si 0.955 3.045 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.067 3.933 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.135 4.135 25 S 0.210 5.790 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.062 0.938 34 H -0.027 1.027 35 H -0.003 1.003 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -18.859 -3.728 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.193 4.193 3 N -0.095 5.095 4 N -0.083 5.083 5 C -0.295 4.295 6 N -0.184 5.184 7 C -0.097 4.097 8 C -0.132 4.132 9 C -0.085 4.085 10 C 0.004 3.996 11 N -0.258 5.258 12 C 0.086 3.914 13 C -0.541 4.541 14 H 0.097 0.903 15 C -0.196 4.196 16 N -0.578 5.578 17 Si 0.781 3.219 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.060 4.060 22 C -0.126 4.126 23 C -0.172 4.172 24 C -0.193 4.193 25 S 0.445 5.555 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.080 0.920 34 H -0.010 1.010 35 H 0.015 0.985 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.771 -19.786 -3.508 20.445 hybrid contribution 0.293 2.567 0.065 2.584 sum -3.478 -17.219 -3.443 17.901 Atomic orbital electron populations 1.20975 0.77976 1.07587 1.06848 1.29464 1.04098 0.90464 0.95273 1.73845 0.86487 1.26853 1.22325 1.47743 1.02497 1.06483 1.51545 1.27288 0.99452 0.88220 1.14560 1.70405 1.02173 1.24443 1.21403 1.21008 0.97160 0.86617 1.04934 1.20483 0.85467 1.02982 1.04276 1.21101 0.80481 0.95082 1.11866 1.20326 1.01239 0.86310 0.91764 1.62027 1.38230 1.13017 1.12526 1.19442 0.93623 0.81610 0.96728 1.21715 1.40520 0.92456 0.99416 0.90250 1.25797 0.96487 0.96902 1.00370 1.70096 1.50729 1.01807 1.35157 0.85536 0.77901 0.78360 0.80124 1.18814 1.20560 1.20896 1.22339 0.89347 0.99526 0.94785 1.21373 0.95484 1.01607 0.94163 1.21468 0.98629 0.97763 0.99304 1.21746 0.96362 1.01078 1.00138 1.84881 0.86110 1.02434 1.82032 0.85064 0.87194 0.86578 0.89008 0.89982 0.89201 0.91538 0.91975 1.00970 0.98534 0.93050 0.90118 0.95836 0.90465 0.94438 0.93437 0.94268 0.92630 0.92286 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.49 71.24 0.75 0.04 16 2 C 0.10 2.27 7.58 88.74 0.67 2.94 16 3 N -0.28 -9.19 11.97 -49.04 -0.59 -9.78 16 4 N -0.31 -11.20 4.42 -181.54 -0.80 -12.00 16 5 C 0.07 2.38 9.00 179.69 1.62 4.00 16 6 N -0.46 -16.07 11.32 -184.78 -2.09 -18.17 16 7 C 0.04 1.21 6.17 41.40 0.26 1.46 16 8 C -0.07 -1.92 9.34 71.24 0.67 -1.25 16 9 C 0.03 1.15 6.20 40.62 0.25 1.41 16 10 C 0.13 5.25 5.15 85.56 0.44 5.69 16 11 N -0.53 -23.57 3.71 -905.36 -3.36 -26.93 16 12 C 0.21 11.20 4.78 85.56 0.41 11.61 16 13 C -0.50 -27.90 7.20 25.60 0.18 -27.72 16 14 H 0.08 4.32 4.50 -2.91 -0.01 4.31 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.94 -56.23 13.29 21.45 0.28 -55.94 16 17 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 18 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 C 0.07 2.60 3.01 86.30 0.26 2.86 16 22 C -0.11 -4.14 2.39 -10.79 -0.03 -4.17 16 23 C -0.11 -4.38 8.37 71.98 0.60 -3.78 16 24 C -0.14 -4.09 9.19 71.98 0.66 -3.43 16 25 S 0.21 4.50 23.35 -56.49 -1.32 3.18 16 26 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.15 4.94 -2.39 -0.01 2.14 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.07 2.39 7.74 -2.39 -0.02 2.37 16 33 H 0.06 2.65 7.80 -2.39 -0.02 2.63 16 34 H -0.03 -1.54 7.68 -2.38 -0.02 -1.56 16 35 H 0.00 -0.20 7.65 -2.38 -0.02 -0.22 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.08 2.86 4.11 -2.39 -0.01 2.85 16 38 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 39 H 0.08 3.54 5.13 -2.39 -0.01 3.53 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.74 6.69 -2.39 -0.02 1.72 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.03 366.80 2.36 -71.67 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.00 Total: 11.14 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 7.20 Total: -9.78 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -6.56 Total: -122.81 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.32 Total: 3.18 kcal Total: -74.03 2.36 -71.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.077 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds