Wall clock time and date at job start Tue Mar 31 2020 13:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47362 * 2 1 4 4 H 1.09006 * 109.47234 * 304.99760 * 3 2 1 5 5 O 1.42902 * 109.47461 * 65.00027 * 3 2 1 6 6 C 1.35908 * 116.99783 * 265.85579 * 5 3 2 7 7 C 1.38749 * 120.05646 * 357.70934 * 6 5 3 8 8 C 1.38127 * 119.94619 * 180.27781 * 7 6 5 9 9 C 1.38283 * 120.05292 * 359.76470 * 8 7 6 10 10 C 1.38246 * 120.11160 * 359.97438 * 9 8 7 11 11 C 1.38163 * 120.05703 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.03139 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.47400 * 184.99968 * 3 2 1 14 14 O 1.20823 * 119.99679 * 244.99837 * 13 3 2 15 15 O 1.34225 * 119.99991 * 64.99491 * 13 3 2 16 16 C 1.45195 * 117.00233 * 180.02562 * 15 13 3 17 17 C 1.53000 * 109.47487 * 180.02562 * 16 15 13 18 18 O 1.42904 * 109.46915 * 65.00034 * 17 16 15 19 19 C 1.42898 * 113.99654 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.46997 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00150 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99696 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47039 * 89.99264 * 24 22 20 26 26 H 1.48498 * 109.47106 * 209.99234 * 24 22 20 27 27 H 1.48507 * 109.46860 * 329.99507 * 24 22 20 28 28 H 1.09003 * 109.47078 * 300.00263 * 1 2 3 29 29 H 1.08999 * 109.47326 * 60.00089 * 1 2 3 30 30 H 1.08999 * 109.47535 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47613 * 239.99683 * 2 1 3 32 32 H 1.09010 * 109.46866 * 119.99702 * 2 1 3 33 33 H 1.08009 * 120.02801 * 0.02562 * 7 6 5 34 34 H 1.08000 * 119.97345 * 179.74525 * 8 7 6 35 35 H 1.07998 * 119.94394 * 180.02562 * 9 8 7 36 36 H 1.08003 * 119.97365 * 180.02562 * 10 9 8 37 37 H 1.09003 * 109.46983 * 90.00184 * 12 11 10 38 38 H 1.09002 * 109.46954 * 330.00293 * 12 11 10 39 39 H 1.08998 * 109.47384 * 210.00370 * 12 11 10 40 40 H 1.09001 * 109.47113 * 300.00500 * 16 15 13 41 41 H 1.09005 * 109.46811 * 60.00024 * 16 15 13 42 42 H 1.08996 * 109.46928 * 185.00326 * 17 16 15 43 43 H 1.09003 * 109.46946 * 304.99923 * 17 16 15 44 44 H 1.09000 * 109.47107 * 299.99906 * 19 18 17 45 45 H 1.08996 * 109.47137 * 59.99923 * 19 18 17 46 46 H 0.96999 * 119.99193 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 0.5059 2.7959 1.2113 7 6 -0.2247 2.9197 0.0383 8 6 -1.3964 3.6511 0.0297 9 6 -1.8439 4.2557 1.1900 10 6 -1.1206 4.1294 2.3614 11 6 0.0520 3.3988 2.3752 12 6 0.8404 3.2619 3.6523 13 6 3.5419 1.4442 -0.1238 14 8 4.2224 1.8595 0.7841 15 8 4.1236 0.9845 -1.2427 16 6 5.5744 1.0158 -1.2921 17 6 6.0512 0.4570 -2.6343 18 8 5.6184 1.3180 -3.6895 19 6 6.0132 0.8841 -4.9925 20 6 5.5067 1.8610 -6.0221 21 1 4.9396 2.7264 -5.7124 22 6 5.7663 1.6495 -7.3596 23 7 6.4564 0.5953 -7.7368 24 14 5.1378 2.8600 -8.6359 25 1 6.1570 3.9165 -8.8602 26 1 4.8777 2.1445 -9.9109 27 1 3.8791 3.4814 -8.1512 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 0.1246 2.4479 -0.8683 34 1 -1.9632 3.7512 -0.8841 35 1 -2.7604 4.8269 1.1814 36 1 -1.4724 4.6022 3.2664 37 1 0.4996 2.3814 4.1970 38 1 0.6925 4.1495 4.2674 39 1 1.8992 3.1558 3.4161 40 1 5.9196 2.0440 -1.1838 41 1 5.9787 0.4095 -0.4815 42 1 7.1396 0.3977 -2.6370 43 1 5.6327 -0.5384 -2.7827 44 1 7.1008 0.8333 -5.0445 45 1 5.5935 -0.1023 -5.1896 46 1 6.6393 0.4468 -8.6777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815216576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:41 Heat of formation + Delta-G solvation = -150.413067 kcal Electronic energy + Delta-G solvation = -26951.108031 eV Core-core repulsion = 22999.491197 eV Total energy + Delta-G solvation = -3951.616834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16747 -40.06897 -37.96268 -37.00108 -36.04224 -34.19454 -32.81545 -32.71304 -30.59342 -30.20997 -28.10750 -26.98571 -26.79961 -23.46452 -23.02822 -22.38068 -21.84100 -21.75546 -20.53703 -18.62555 -17.68123 -16.97095 -16.66404 -16.40893 -16.03708 -15.81180 -15.66819 -15.27237 -14.72225 -14.63638 -14.39118 -14.09192 -13.84376 -13.75165 -13.36928 -13.06120 -12.92304 -12.87671 -12.51839 -12.42295 -12.20419 -12.12206 -11.94866 -11.64479 -11.48568 -11.42640 -11.24236 -10.98074 -10.87746 -10.81092 -10.73063 -10.45413 -10.27511 -10.07547 -9.16721 -9.04927 -8.91747 -8.33819 -8.25289 -6.15161 -4.16975 1.07252 1.18487 2.08026 2.10590 3.27957 3.28413 3.33067 3.38284 3.51156 4.28417 4.31401 4.38765 4.49701 4.55943 4.64986 4.69146 4.86148 4.89480 5.04965 5.08167 5.15324 5.16452 5.21541 5.32823 5.40127 5.40581 5.43897 5.51278 5.63406 5.68761 5.73374 5.80459 5.87181 5.95905 6.01322 6.01551 6.09565 6.22513 6.29333 6.45857 6.51528 7.01259 7.08582 7.35833 7.72101 7.75008 8.08809 8.47996 8.95427 9.47934 10.96368 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002618 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.801792 B =10694.481600 C =11813.813316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.091 3.909 4 H 0.117 0.883 5 O -0.283 6.283 6 C 0.131 3.869 7 C -0.206 4.206 8 C -0.084 4.084 9 C -0.155 4.155 10 C -0.085 4.085 11 C -0.114 4.114 12 C -0.108 4.108 13 C 0.462 3.538 14 O -0.493 6.493 15 O -0.335 6.335 16 C 0.075 3.925 17 C 0.062 3.938 18 O -0.391 6.391 19 C 0.194 3.806 20 C -0.516 4.516 21 H 0.067 0.933 22 C 0.056 3.944 23 N -0.898 5.898 24 Si 0.908 3.092 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.271 1.271 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.006 0.994 45 H 0.008 0.992 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.061 0.994 20.470 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.033 3.967 4 H 0.134 0.866 5 O -0.196 6.196 6 C 0.086 3.914 7 C -0.224 4.224 8 C -0.102 4.102 9 C -0.173 4.173 10 C -0.103 4.103 11 C -0.115 4.115 12 C -0.164 4.164 13 C 0.303 3.697 14 O -0.380 6.380 15 O -0.251 6.251 16 C 0.002 3.998 17 C -0.016 4.016 18 O -0.311 6.311 19 C 0.120 3.880 20 C -0.554 4.554 21 H 0.085 0.915 22 C -0.145 4.145 23 N -0.538 5.538 24 Si 0.736 3.264 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.196 1.196 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.702 1.151 20.746 25.453 hybrid contribution 0.057 0.322 -1.057 1.106 sum -14.645 1.473 19.689 24.583 Atomic orbital electron populations 1.21942 0.94085 1.02752 1.02519 1.21995 0.97647 0.93026 1.04810 1.21840 0.89363 0.96580 0.88898 0.86553 1.86143 1.37571 1.62911 1.32987 1.18819 0.85851 0.92699 0.94065 1.21393 0.98118 1.05225 0.97688 1.20939 0.95282 0.95588 0.98383 1.21055 1.00968 1.02283 0.92984 1.20884 0.93446 0.97607 0.98382 1.19263 0.97198 1.00934 0.94114 1.20639 1.00378 1.01839 0.93576 1.23047 0.90881 0.74989 0.80759 1.90674 1.65120 1.42329 1.39873 1.86556 1.24899 1.75203 1.38477 1.23296 0.75406 1.03106 0.98016 1.22328 0.97845 0.94590 0.86829 1.87919 1.78059 1.48930 1.16201 1.20242 0.94564 0.95681 0.77481 1.21042 1.34843 1.09242 0.90252 0.91519 1.24951 0.95220 0.95933 0.98385 1.69961 1.39554 1.27409 1.16830 0.86326 0.79338 0.80605 0.80175 1.20439 1.21037 1.19590 0.92087 0.91907 0.91653 0.88447 0.90152 0.84741 0.85627 0.85926 0.85445 0.91421 0.91736 0.90743 0.90301 0.90186 0.91740 0.93077 0.97585 0.97455 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.45 37.15 0.31 -1.00 16 2 C -0.14 -1.35 5.62 -26.74 -0.15 -1.50 16 3 C 0.09 1.11 2.68 -27.88 -0.07 1.03 16 4 H 0.12 1.30 5.38 -51.93 -0.28 1.02 16 5 O -0.28 -3.67 8.24 -39.36 -0.32 -3.99 16 6 C 0.13 1.51 5.30 -39.22 -0.21 1.31 16 7 C -0.21 -2.11 7.16 -39.43 -0.28 -2.39 16 8 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 9 C -0.15 -1.30 10.04 -39.56 -0.40 -1.70 16 10 C -0.09 -0.75 9.70 -39.61 -0.38 -1.13 16 11 C -0.11 -1.20 5.89 -104.47 -0.62 -1.82 16 12 C -0.11 -1.00 9.80 36.01 0.35 -0.65 16 13 C 0.46 7.04 7.29 36.01 0.26 7.31 16 14 O -0.49 -8.67 16.26 -25.46 -0.41 -9.09 16 15 O -0.34 -5.44 10.16 -42.01 -0.43 -5.87 16 16 C 0.08 1.17 5.84 37.16 0.22 1.39 16 17 C 0.06 1.10 6.33 37.16 0.24 1.33 16 18 O -0.39 -9.31 10.30 -38.80 -0.40 -9.71 16 19 C 0.19 5.25 5.69 36.01 0.20 5.45 16 20 C -0.52 -15.06 9.43 -34.44 -0.32 -15.39 16 21 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 24 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 28 H 0.06 0.56 6.27 -51.93 -0.33 0.23 16 29 H 0.06 0.49 6.80 -51.93 -0.35 0.14 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.14 1.26 4.54 -52.48 -0.24 1.02 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 40 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 41 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.59 384.10 -8.45 -42.04 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.05 Total: -2.57 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.35 Total: -7.39 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.56 Total: -28.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.59 -8.45 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.372 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds