Wall clock time and date at job start Tue Mar 31 2020 13:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46792 * 2 1 4 4 C 1.53005 * 109.46988 * 304.99780 * 3 2 1 5 5 C 1.53004 * 109.47102 * 184.99766 * 3 2 1 6 6 O 1.42897 * 109.47476 * 64.99701 * 3 2 1 7 7 C 1.42900 * 114.00270 * 179.97438 * 6 3 2 8 8 C 1.50699 * 109.47103 * 180.02562 * 7 6 3 9 9 O 1.20821 * 120.00185 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00047 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.38294 * 119.93130 * 269.73094 * 12 11 10 14 14 C 1.38099 * 120.07055 * 179.72623 * 13 12 11 15 15 C 1.38885 * 119.92916 * 0.56465 * 14 13 12 16 16 O 1.35746 * 120.07221 * 179.68553 * 15 14 13 17 17 C 1.34828 * 117.00240 * 174.48968 * 16 15 14 18 18 H 1.08006 * 120.00054 * 5.05118 * 17 16 15 19 19 C 1.38655 * 120.00332 * 185.05591 * 17 16 15 20 20 N 1.31557 * 120.00166 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99665 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47524 * 90.00171 * 21 19 17 23 23 H 1.48503 * 109.46813 * 210.00052 * 21 19 17 24 24 H 1.48496 * 109.47394 * 329.99878 * 21 19 17 25 25 C 1.38888 * 119.85809 * 359.70827 * 15 14 13 26 26 C 1.38097 * 119.93011 * 359.97438 * 25 15 14 27 27 H 1.08997 * 109.46921 * 60.00573 * 1 2 3 28 28 H 1.09000 * 109.46910 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47329 * 300.00403 * 1 2 3 30 30 H 1.09000 * 109.47329 * 239.99597 * 2 1 3 31 31 H 1.08997 * 109.46921 * 119.99427 * 2 1 3 32 32 H 1.09000 * 109.46927 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.46782 * 299.99813 * 4 3 2 34 34 H 1.08997 * 109.47363 * 60.00423 * 4 3 2 35 35 H 1.09004 * 109.46782 * 300.00150 * 5 3 2 36 36 H 1.09005 * 109.46760 * 59.99562 * 5 3 2 37 37 H 1.09000 * 109.47220 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47018 * 60.00274 * 7 6 3 39 39 H 1.08996 * 109.47258 * 300.00133 * 7 6 3 40 40 H 1.08996 * 109.47566 * 299.99750 * 11 10 8 41 41 H 1.09002 * 109.47418 * 60.00155 * 11 10 8 42 42 H 1.08001 * 119.96614 * 359.97036 * 13 12 11 43 43 H 1.08000 * 120.04137 * 180.26759 * 14 13 12 44 44 H 0.96994 * 120.00190 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03290 * 179.97438 * 25 15 14 46 46 H 1.07997 * 119.96090 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 6 3.5649 1.4444 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 2.0922 3.4403 1.3234 8 6 1.6420 4.0116 2.6433 9 8 1.0164 3.3257 3.4166 10 8 1.9351 5.2828 2.9593 11 6 1.4692 5.7662 4.2468 12 6 1.8890 7.2024 4.4260 13 6 3.1026 7.4976 5.0198 14 6 3.4928 8.8125 5.1804 15 6 2.6597 9.8393 4.7554 16 8 3.0375 11.1330 4.9176 17 6 2.2370 12.0763 4.3816 18 1 1.3007 11.7934 3.9235 19 6 2.6158 13.4096 4.4184 20 7 1.8349 14.3300 3.8949 21 14 4.2348 13.8991 5.2111 22 1 5.3124 13.8785 4.1896 23 1 4.1153 15.2668 5.7771 24 1 4.5639 12.9411 6.2970 25 6 1.4390 9.5397 4.1646 26 6 1.0576 8.2226 4.0009 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.7935 3.2267 -1.1820 33 1 1.7184 1.7118 -2.1130 34 1 0.3436 2.1978 -1.0922 35 1 3.9994 0.9054 0.7162 36 1 3.8532 0.9570 -1.0571 37 1 3.9282 2.4721 -0.1252 38 1 1.6590 4.0210 0.5091 39 1 3.1796 3.4827 1.2616 40 1 0.3822 5.6971 4.2891 41 1 1.9030 5.1593 5.0415 42 1 3.7477 6.6988 5.3548 43 1 4.4426 9.0424 5.6402 44 1 2.0997 15.2627 3.9210 45 1 0.7888 10.3360 3.8334 46 1 0.1087 7.9890 3.5412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838409382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:23 Heat of formation + Delta-G solvation = -139.711148 kcal Electronic energy + Delta-G solvation = -26216.700098 eV Core-core repulsion = 22265.547335 eV Total energy + Delta-G solvation = -3951.152764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58062 -39.50674 -39.16614 -37.13173 -36.10201 -34.61460 -32.53734 -30.95491 -30.66182 -30.35996 -28.80404 -27.85263 -26.17552 -24.66357 -23.82320 -22.20888 -21.30181 -20.57176 -20.16680 -18.01963 -17.83315 -17.45911 -16.84290 -16.75112 -16.51370 -15.48984 -15.28837 -14.89768 -14.57332 -14.34651 -14.10015 -13.95228 -13.89113 -13.81283 -13.59428 -13.02709 -12.82413 -12.66224 -12.55606 -12.44345 -12.29739 -12.21688 -12.15032 -12.01834 -11.59340 -11.50831 -11.14594 -11.07272 -10.86746 -10.80887 -10.77984 -10.52769 -10.32431 -10.22028 -9.98177 -9.48457 -8.96119 -8.37841 -7.50315 -6.50641 -4.17411 1.74378 2.03635 2.15145 2.50484 3.16804 3.20630 3.34653 3.66419 4.16313 4.27984 4.35721 4.40655 4.53870 4.70917 4.74477 4.83154 4.84471 4.93965 5.01708 5.08528 5.11364 5.15845 5.17981 5.20181 5.22535 5.35946 5.51802 5.55950 5.57470 5.60828 5.65765 5.70335 5.75207 5.88901 6.02457 6.06598 6.21319 6.43643 6.45045 6.66905 6.75194 6.90528 7.10235 7.17468 7.48536 7.70052 7.76973 7.93449 8.83739 9.44098 10.56397 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.001952 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.333069 B =14338.693995 C =14511.928803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C 0.111 3.889 4 C -0.185 4.185 5 C -0.183 4.183 6 O -0.353 6.353 7 C 0.064 3.936 8 C 0.459 3.541 9 O -0.495 6.495 10 O -0.350 6.350 11 C 0.130 3.870 12 C -0.196 4.196 13 C -0.050 4.050 14 C -0.196 4.196 15 C 0.169 3.831 16 O -0.211 6.211 17 C -0.392 4.392 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.874 5.874 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.225 4.225 26 C -0.046 4.046 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.281 0.719 45 H 0.136 0.864 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -24.558 -8.674 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C 0.072 3.928 4 C -0.243 4.243 5 C -0.240 4.240 6 O -0.272 6.272 7 C -0.014 4.014 8 C 0.300 3.700 9 O -0.382 6.382 10 O -0.268 6.268 11 C 0.058 3.942 12 C -0.197 4.197 13 C -0.068 4.068 14 C -0.215 4.215 15 C 0.116 3.884 16 O -0.115 6.115 17 C -0.467 4.467 18 H 0.126 0.874 19 C -0.140 4.140 20 N -0.511 5.511 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.244 4.244 26 C -0.064 4.064 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.091 0.909 45 H 0.154 0.846 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.299 -24.459 -8.191 25.826 hybrid contribution 0.601 0.590 0.083 0.846 sum 1.900 -23.869 -8.108 25.280 Atomic orbital electron populations 1.21822 0.95106 1.01584 1.02706 1.21497 0.96999 0.93154 1.02721 1.21639 0.93724 0.93520 0.83940 1.22545 1.02537 1.00859 0.98321 1.22481 0.95518 1.02913 1.03132 1.88042 1.78142 1.22517 1.38540 1.21719 1.00967 0.85302 0.93382 1.23130 0.77455 0.80857 0.88516 1.90671 1.36512 1.60211 1.50783 1.86604 1.72374 1.27709 1.40081 1.21737 0.99071 0.92159 0.81280 1.18926 0.98333 0.92005 1.10447 1.20516 0.94443 0.95231 0.96643 1.20195 1.00914 0.90877 1.09518 1.19190 0.92273 0.84701 0.92225 1.83572 1.49029 1.11586 1.67337 1.20800 1.02879 0.85636 1.37377 0.87444 1.24496 0.99112 0.94187 0.96168 1.69640 1.37255 1.01675 1.42562 0.86166 0.82264 0.77989 0.80416 1.19779 1.20674 1.18305 1.21267 0.98554 0.96843 1.07758 1.20684 0.98006 0.91979 0.95752 0.92497 0.92844 0.91611 0.90514 0.90971 0.91972 0.91162 0.90966 0.91430 0.91129 0.91849 0.88806 0.88865 0.90959 0.90988 0.86667 0.86174 0.90884 0.84617 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.32 37.16 0.35 -0.78 16 2 C -0.11 -0.73 5.23 -26.73 -0.14 -0.87 16 3 C 0.11 0.84 0.82 -90.62 -0.07 0.76 16 4 C -0.19 -1.18 7.76 37.16 0.29 -0.89 16 5 C -0.18 -1.13 8.25 37.16 0.31 -0.83 16 6 O -0.35 -3.81 9.05 -55.18 -0.50 -4.31 16 7 C 0.06 0.63 5.73 36.00 0.21 0.84 16 8 C 0.46 6.22 8.03 36.00 0.29 6.51 16 9 O -0.49 -8.16 16.25 -25.47 -0.41 -8.58 16 10 O -0.35 -5.03 10.20 -39.26 -0.40 -5.43 16 11 C 0.13 1.88 5.59 36.01 0.20 2.08 16 12 C -0.20 -3.25 5.52 -104.58 -0.58 -3.83 16 13 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 14 C -0.20 -3.74 9.99 -39.39 -0.39 -4.14 16 15 C 0.17 3.79 6.65 -39.10 -0.26 3.53 16 16 O -0.21 -5.41 8.59 0.06 0.00 -5.41 16 17 C -0.39 -10.74 9.95 30.89 0.31 -10.44 16 18 H 0.11 3.00 5.44 -52.48 -0.29 2.72 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.87 -24.66 13.96 55.48 0.77 -23.89 16 21 Si 0.91 21.12 28.62 -169.99 -4.86 16.26 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.23 -4.71 9.17 -39.39 -0.36 -5.07 16 26 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 27 H 0.06 0.37 6.34 -51.93 -0.33 0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.61 7.82 -51.93 -0.41 0.21 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.49 6.35 -51.93 -0.33 0.16 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 38 H 0.09 0.77 6.42 -51.93 -0.33 0.43 16 39 H 0.09 0.75 6.41 -51.93 -0.33 0.41 16 40 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 44 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.14 2.97 5.64 -52.49 -0.30 2.67 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -30.91 379.88 -7.18 -38.08 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.77 Total: 1.40 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.73 Total: -13.85 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.77 Total: -23.89 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -1.31 Total: -23.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.86 Total: 16.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.91 -7.18 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838409382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.631 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds