Wall clock time and date at job start Tue Mar 31 2020 13:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46792 * 2 1 4 4 C 1.53005 * 109.46988 * 304.99780 * 3 2 1 5 5 C 1.53004 * 109.47102 * 184.99766 * 3 2 1 6 6 O 1.42897 * 109.47476 * 64.99701 * 3 2 1 7 7 C 1.42900 * 114.00270 * 179.97438 * 6 3 2 8 8 C 1.50699 * 109.47103 * 180.02562 * 7 6 3 9 9 O 1.20821 * 120.00185 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00047 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.38294 * 119.93130 * 269.73094 * 12 11 10 14 14 C 1.38099 * 120.07055 * 179.72623 * 13 12 11 15 15 C 1.38885 * 119.92916 * 0.56465 * 14 13 12 16 16 O 1.35746 * 120.07221 * 179.68553 * 15 14 13 17 17 C 1.34828 * 117.00240 * 174.48968 * 16 15 14 18 18 H 1.08006 * 120.00054 * 5.05118 * 17 16 15 19 19 C 1.38655 * 120.00332 * 185.05591 * 17 16 15 20 20 N 1.31557 * 120.00166 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99665 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47524 * 90.00171 * 21 19 17 23 23 H 1.48503 * 109.46813 * 210.00052 * 21 19 17 24 24 H 1.48496 * 109.47394 * 329.99878 * 21 19 17 25 25 C 1.38888 * 119.85809 * 359.70827 * 15 14 13 26 26 C 1.38097 * 119.93011 * 359.97438 * 25 15 14 27 27 H 1.08997 * 109.46921 * 60.00573 * 1 2 3 28 28 H 1.09000 * 109.46910 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47329 * 300.00403 * 1 2 3 30 30 H 1.09000 * 109.47329 * 239.99597 * 2 1 3 31 31 H 1.08997 * 109.46921 * 119.99427 * 2 1 3 32 32 H 1.09000 * 109.46927 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.46782 * 299.99813 * 4 3 2 34 34 H 1.08997 * 109.47363 * 60.00423 * 4 3 2 35 35 H 1.09004 * 109.46782 * 300.00150 * 5 3 2 36 36 H 1.09005 * 109.46760 * 59.99562 * 5 3 2 37 37 H 1.09000 * 109.47220 * 180.02562 * 5 3 2 38 38 H 1.09001 * 109.47018 * 60.00274 * 7 6 3 39 39 H 1.08996 * 109.47258 * 300.00133 * 7 6 3 40 40 H 1.08996 * 109.47566 * 299.99750 * 11 10 8 41 41 H 1.09002 * 109.47418 * 60.00155 * 11 10 8 42 42 H 1.08001 * 119.96614 * 359.97036 * 13 12 11 43 43 H 1.08000 * 120.04137 * 180.26759 * 14 13 12 44 44 H 0.96994 * 120.00190 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03290 * 179.97438 * 25 15 14 46 46 H 1.07997 * 119.96090 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 6 3.5649 1.4444 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 2.0922 3.4403 1.3234 8 6 1.6420 4.0116 2.6433 9 8 1.0164 3.3257 3.4166 10 8 1.9351 5.2828 2.9593 11 6 1.4692 5.7662 4.2468 12 6 1.8890 7.2024 4.4260 13 6 3.1026 7.4976 5.0198 14 6 3.4928 8.8125 5.1804 15 6 2.6597 9.8393 4.7554 16 8 3.0375 11.1330 4.9176 17 6 2.2370 12.0763 4.3816 18 1 1.3007 11.7934 3.9235 19 6 2.6158 13.4096 4.4184 20 7 1.8349 14.3300 3.8949 21 14 4.2348 13.8991 5.2111 22 1 5.3124 13.8785 4.1896 23 1 4.1153 15.2668 5.7771 24 1 4.5639 12.9411 6.2970 25 6 1.4390 9.5397 4.1646 26 6 1.0576 8.2226 4.0009 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.7935 3.2267 -1.1820 33 1 1.7184 1.7118 -2.1130 34 1 0.3436 2.1978 -1.0922 35 1 3.9994 0.9054 0.7162 36 1 3.8532 0.9570 -1.0571 37 1 3.9282 2.4721 -0.1252 38 1 1.6590 4.0210 0.5091 39 1 3.1796 3.4827 1.2616 40 1 0.3822 5.6971 4.2891 41 1 1.9030 5.1593 5.0415 42 1 3.7477 6.6988 5.3548 43 1 4.4426 9.0424 5.6402 44 1 2.0997 15.2627 3.9210 45 1 0.7888 10.3360 3.8334 46 1 0.1087 7.9890 3.5412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838409382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:22 Heat of formation + Delta-G solvation = -155.984838 kcal Electronic energy + Delta-G solvation = -26217.405778 eV Core-core repulsion = 22265.547335 eV Total energy + Delta-G solvation = -3951.858444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65196 -40.91754 -40.11004 -38.65287 -37.35892 -35.27127 -34.51390 -32.39554 -31.88511 -31.18649 -29.74906 -28.32684 -27.81834 -26.22156 -24.42979 -23.77314 -22.43110 -21.98858 -20.78357 -19.87983 -19.17825 -18.80821 -17.91311 -17.80285 -17.21191 -16.72424 -16.40659 -16.16897 -15.78433 -15.66644 -15.61633 -15.21893 -14.89966 -14.59173 -14.53205 -14.36320 -14.25980 -14.11305 -13.76307 -13.66915 -13.12836 -13.05953 -12.89342 -12.70154 -12.67433 -12.60764 -12.52120 -12.33901 -12.17317 -11.96644 -11.73670 -11.69344 -11.56573 -11.30960 -11.20366 -10.92416 -10.61852 -9.87950 -9.16312 -8.51813 -6.25224 0.33644 0.51209 1.10331 1.32477 1.34488 1.45847 1.52784 2.27243 2.69190 2.91357 3.03717 3.13140 3.62221 3.81036 3.85526 3.87823 3.90789 4.03815 4.09110 4.11561 4.16241 4.27379 4.38262 4.41388 4.52118 4.62304 4.68999 4.70898 4.71112 4.72463 4.88652 4.91824 5.06862 5.13041 5.16683 5.18222 5.26649 5.27259 5.35421 5.37329 5.50642 5.51259 5.63500 5.74810 5.84534 6.12607 6.14831 6.70633 6.81822 7.53238 8.59275 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.001952 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.333069 B =14338.693995 C =14511.928803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C 0.104 3.896 4 C -0.185 4.185 5 C -0.181 4.181 6 O -0.380 6.380 7 C 0.067 3.933 8 C 0.461 3.539 9 O -0.528 6.528 10 O -0.354 6.354 11 C 0.129 3.871 12 C -0.173 4.173 13 C -0.042 4.042 14 C -0.192 4.192 15 C 0.133 3.867 16 O -0.239 6.239 17 C -0.402 4.402 18 H 0.083 0.917 19 C 0.011 3.989 20 N -0.920 5.920 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.240 4.240 26 C -0.047 4.047 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.157 0.843 43 H 0.136 0.864 44 H 0.286 0.714 45 H 0.113 0.887 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -27.420 -9.296 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C 0.066 3.934 4 C -0.242 4.242 5 C -0.239 4.239 6 O -0.300 6.300 7 C -0.010 4.010 8 C 0.305 3.695 9 O -0.417 6.417 10 O -0.271 6.271 11 C 0.056 3.944 12 C -0.174 4.174 13 C -0.059 4.059 14 C -0.211 4.211 15 C 0.083 3.917 16 O -0.146 6.146 17 C -0.478 4.478 18 H 0.101 0.899 19 C -0.188 4.188 20 N -0.560 5.560 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.259 4.259 26 C -0.065 4.065 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.174 0.826 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.131 0.869 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.985 -27.370 -8.826 28.913 hybrid contribution -0.032 1.039 0.220 1.062 sum 2.954 -26.332 -8.606 27.859 Atomic orbital electron populations 1.21798 0.95684 1.01830 1.01743 1.21558 0.96493 0.93094 1.03321 1.21878 0.94793 0.93579 0.83187 1.22544 1.01935 1.01148 0.98536 1.22475 0.94279 1.03351 1.03761 1.88018 1.78773 1.22837 1.40394 1.21847 1.02275 0.85346 0.91547 1.23835 0.76406 0.80011 0.89297 1.90663 1.38169 1.60783 1.52088 1.86575 1.72403 1.28452 1.39670 1.21708 0.99769 0.90705 0.82179 1.19266 0.97508 0.93023 1.07608 1.20972 0.94711 0.95123 0.95141 1.20524 1.01041 0.91013 1.08557 1.19751 0.93636 0.84436 0.93881 1.83522 1.49217 1.12478 1.69345 1.20723 1.02618 0.86688 1.37753 0.89927 1.25306 1.02546 0.94047 0.96914 1.69723 1.39233 1.02151 1.44872 0.85207 0.78148 0.77896 0.79424 1.18977 1.19289 1.18569 1.21272 0.98285 0.97863 1.08471 1.20939 0.99299 0.90829 0.95475 0.91684 0.92034 0.94277 0.88214 0.92006 0.91571 0.89440 0.91812 0.92132 0.89403 0.91374 0.86882 0.86562 0.90243 0.89313 0.82556 0.84586 0.90480 0.86869 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.32 71.98 0.67 -1.38 16 2 C -0.11 -1.27 5.23 30.60 0.16 -1.11 16 3 C 0.10 1.33 0.82 -10.79 -0.01 1.32 16 4 C -0.18 -1.86 7.76 71.98 0.56 -1.30 16 5 C -0.18 -1.73 8.25 71.98 0.59 -1.13 16 6 O -0.38 -7.55 9.05 -129.90 -1.18 -8.73 16 7 C 0.07 1.15 5.73 71.24 0.41 1.56 16 8 C 0.46 11.38 8.03 71.24 0.57 11.95 16 9 O -0.53 -16.55 16.25 28.41 0.46 -16.09 16 10 O -0.35 -9.03 10.20 -51.43 -0.52 -9.55 16 11 C 0.13 3.29 5.59 71.24 0.40 3.68 16 12 C -0.17 -5.22 5.52 -19.83 -0.11 -5.33 16 13 C -0.04 -1.23 9.69 22.25 0.22 -1.02 16 14 C -0.19 -7.01 9.99 22.39 0.22 -6.79 16 15 C 0.13 6.03 6.65 22.58 0.15 6.18 16 16 O -0.24 -12.64 8.59 -22.68 -0.19 -12.83 16 17 C -0.40 -23.20 9.95 67.92 0.68 -22.53 16 18 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 19 C 0.01 0.62 5.49 84.83 0.47 1.08 16 20 N -0.92 -54.09 13.96 21.61 0.30 -53.79 16 21 Si 0.97 44.46 28.62 68.60 1.96 46.42 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 25 C -0.24 -10.27 9.17 22.39 0.21 -10.07 16 26 C -0.05 -1.62 9.69 22.25 0.22 -1.40 16 27 H 0.06 0.74 6.34 -2.39 -0.02 0.73 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.72 7.82 -2.39 -0.02 0.71 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.61 6.54 -2.39 -0.02 0.59 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.75 6.35 -2.39 -0.02 0.74 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.07 0.58 6.54 -2.39 -0.02 0.56 16 38 H 0.11 1.52 6.42 -2.39 -0.02 1.50 16 39 H 0.12 1.47 6.41 -2.39 -0.02 1.46 16 40 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 41 H 0.09 2.03 8.07 -2.39 -0.02 2.01 16 42 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.29 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.11 5.32 5.64 -2.91 -0.02 5.31 16 46 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -70.16 379.88 7.21 -62.95 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.98 Total: 17.90 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 5.40 Total: -26.28 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.30 Total: -53.79 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -1.43 Total: -47.20 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.96 Total: 46.42 kcal Total: -70.16 7.21 -62.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838409382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.037 kcal (2) G-P(sol) polarization free energy of solvation -70.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds