Wall clock time and date at job start Tue Mar 31 2020 13:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 H 1.09003 * 109.46818 * 54.99679 * 3 2 1 5 5 O 1.45198 * 109.46946 * 295.00234 * 3 2 1 6 6 C 1.34230 * 117.00173 * 89.99709 * 5 3 2 7 7 O 1.20822 * 120.00010 * 359.97438 * 6 5 3 8 8 C 1.50706 * 119.99763 * 180.02562 * 6 5 3 9 9 C 1.53002 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99769 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47118 * 89.99790 * 14 12 10 16 16 H 1.48499 * 109.47134 * 210.00310 * 14 12 10 17 17 H 1.48498 * 109.47011 * 329.99931 * 14 12 10 18 18 C 1.50693 * 109.47132 * 175.00188 * 3 2 1 19 19 C 1.38173 * 119.94743 * 84.72481 * 18 3 2 20 20 C 1.38775 * 120.05473 * 179.76821 * 19 18 3 21 21 O 1.35900 * 120.02961 * 180.23622 * 20 19 18 22 22 C 1.42898 * 117.00138 * 180.29673 * 21 20 19 23 23 C 1.38635 * 119.94350 * 0.52698 * 20 19 18 24 24 C 1.38629 * 119.89189 * 359.72133 * 23 20 19 25 25 O 1.35898 * 120.02814 * 179.97438 * 24 23 20 26 26 C 1.42900 * 116.99872 * 0.02562 * 25 24 23 27 27 C 1.38176 * 119.94472 * 264.99612 * 18 3 2 28 28 H 1.09009 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47098 * 299.99854 * 1 2 3 30 30 H 1.08995 * 109.47263 * 60.00199 * 1 2 3 31 31 H 1.08997 * 109.47098 * 240.00146 * 2 1 3 32 32 H 1.09005 * 109.47254 * 119.99799 * 2 1 3 33 33 H 1.09000 * 109.47318 * 299.99486 * 8 6 5 34 34 H 1.09000 * 109.47161 * 60.00117 * 8 6 5 35 35 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 36 36 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 37 37 H 0.97000 * 120.00540 * 179.97438 * 13 12 10 38 38 H 1.07998 * 119.97411 * 359.97438 * 19 18 3 39 39 H 1.08998 * 109.47296 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.46589 * 299.99283 * 22 21 20 41 41 H 1.09001 * 109.47161 * 59.99530 * 22 21 20 42 42 H 1.08003 * 120.05352 * 179.75093 * 23 20 19 43 43 H 1.09002 * 109.46878 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47736 * 299.99854 * 26 25 24 45 45 H 1.09006 * 109.47042 * 60.00239 * 26 25 24 46 46 H 1.08001 * 119.97140 * 359.97438 * 27 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7254 -1.2559 7 8 -0.2193 2.7369 -0.2656 8 6 0.0069 3.4215 -2.5088 9 6 -1.3613 4.0593 -2.2592 10 6 -1.8274 4.7549 -3.5121 11 1 -1.2098 4.7429 -4.3980 12 6 -3.0428 5.4058 -3.5279 13 7 -3.7951 5.4200 -2.4493 14 14 -3.6209 6.2674 -5.0812 15 1 -4.4001 5.3164 -5.9140 16 1 -4.4784 7.4235 -4.7161 17 1 -2.4435 6.7474 -5.8484 18 6 3.5418 1.4443 0.1238 19 6 4.3271 1.3005 -1.0040 20 6 5.7104 1.3066 -0.8932 21 8 6.4822 1.1699 -2.0033 22 6 7.8986 1.1787 -1.8139 23 6 6.3042 1.4463 0.3517 24 6 5.5142 1.5853 1.4824 25 8 6.0934 1.7218 2.7041 26 6 7.5217 1.7141 2.7495 27 6 4.1314 1.5841 1.3656 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7237 4.1958 -2.7822 34 1 -0.0721 2.6969 -3.3192 35 1 -2.0784 3.2854 -1.9855 36 1 -1.2819 4.7841 -1.4488 37 1 -4.6500 5.8782 -2.4601 38 1 3.8640 1.1865 -1.9730 39 1 8.3947 1.0612 -2.7773 40 1 8.1989 2.1245 -1.3631 41 1 8.1823 0.3566 -1.1568 42 1 7.3806 1.4473 0.4405 43 1 7.8530 1.8313 3.7813 44 1 7.8927 0.7688 2.3535 45 1 7.9087 2.5368 2.1482 46 1 3.5155 1.6924 2.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851473912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:03 Heat of formation + Delta-G solvation = -151.735032 kcal Electronic energy + Delta-G solvation = -27049.270103 eV Core-core repulsion = 23097.595944 eV Total energy + Delta-G solvation = -3951.674158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92109 -40.10840 -39.08630 -37.53519 -35.91115 -33.65717 -33.40086 -31.05073 -30.78034 -30.55847 -28.43242 -26.92252 -26.62378 -25.54744 -22.80122 -22.41942 -22.00540 -20.64954 -19.68917 -18.71196 -17.54454 -17.15041 -16.41967 -16.28333 -16.22465 -16.05717 -15.79490 -15.78555 -15.40653 -14.99892 -14.45893 -14.19862 -13.94490 -13.56993 -13.40310 -12.95005 -12.65643 -12.54132 -12.43564 -12.23093 -12.04306 -11.92336 -11.80458 -11.71463 -11.43098 -11.21969 -11.14826 -10.94653 -10.85049 -10.68621 -10.61497 -10.12772 -10.01311 -9.81272 -9.50767 -9.15031 -8.83846 -8.35220 -8.20331 -5.99164 -4.03726 1.00596 1.27476 2.80821 2.89079 2.96546 3.19753 3.33424 3.39672 3.42794 3.52755 4.37652 4.46757 4.56134 4.66271 4.74384 4.77455 4.78572 4.90550 4.94528 4.96197 5.06100 5.08806 5.12103 5.25599 5.28694 5.36319 5.43922 5.62697 5.76633 5.85803 5.96717 6.01050 6.04621 6.15119 6.17717 6.24211 6.34229 6.41864 6.49935 6.72648 6.87621 7.01596 7.22369 7.69452 7.76972 8.00835 8.29833 8.46554 9.03469 9.60183 11.11828 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002536 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.697401 B =11040.017264 C =11695.927812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.127 3.873 4 H 0.098 0.902 5 O -0.355 6.355 6 C 0.457 3.543 7 O -0.500 6.500 8 C -0.104 4.104 9 C 0.034 3.966 10 C -0.528 4.528 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.007 4.007 19 C -0.157 4.157 20 C 0.162 3.838 21 O -0.311 6.311 22 C 0.027 3.973 23 C -0.296 4.296 24 C 0.163 3.837 25 O -0.313 6.313 26 C 0.027 3.973 27 C -0.176 4.176 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.133 0.867 43 H 0.101 0.899 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.399 -11.881 7.387 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.072 3.928 4 H 0.115 0.885 5 O -0.273 6.273 6 C 0.301 3.699 7 O -0.386 6.386 8 C -0.141 4.141 9 C -0.003 4.003 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.007 4.007 19 C -0.176 4.176 20 C 0.117 3.883 21 O -0.224 6.224 22 C -0.068 4.068 23 C -0.315 4.315 24 C 0.118 3.882 25 O -0.226 6.226 26 C -0.068 4.068 27 C -0.195 4.195 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.160 0.840 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.151 0.849 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 24.897 -11.824 7.776 28.638 hybrid contribution 0.216 0.499 -0.607 0.814 sum 25.113 -11.325 7.170 28.466 Atomic orbital electron populations 1.21852 0.94173 1.01447 1.03453 1.21930 0.97325 0.94396 1.03175 1.21393 0.89533 0.94223 0.87691 0.88457 1.86628 1.38863 1.64164 1.37675 1.24706 0.77948 0.75328 0.91951 1.90629 1.54485 1.57378 1.36090 1.21770 1.01924 0.99336 0.91111 1.19007 0.87808 0.96005 0.97471 1.21162 1.03746 1.33965 0.97705 0.92347 1.25015 0.96681 0.96359 0.96269 1.69990 1.11960 1.43113 1.27738 0.86555 0.78735 0.79213 0.83261 1.20613 1.21211 1.19802 1.19173 0.93879 0.95724 0.91945 1.20220 0.89645 1.07563 1.00182 1.18704 0.90828 0.93959 0.84832 1.86123 1.18372 1.87527 1.30370 1.23060 0.78787 1.01196 1.03757 1.21234 1.00318 1.17535 0.92422 1.18540 0.91960 0.94252 0.83494 1.86095 1.22054 1.87695 1.26797 1.23060 0.78519 1.01267 1.03926 1.20062 0.91603 1.09888 0.97926 0.92724 0.91684 0.92327 0.90799 0.90360 0.89038 0.89025 0.95576 0.95596 0.92878 0.84045 0.88049 0.92719 0.92806 0.84897 0.88080 0.92737 0.92682 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.56 37.16 0.32 -1.85 16 2 C -0.13 -1.65 5.63 -26.73 -0.15 -1.80 16 3 C 0.13 1.82 2.46 -27.88 -0.07 1.75 16 4 H 0.10 1.49 7.06 -51.93 -0.37 1.12 16 5 O -0.35 -5.94 8.97 -39.26 -0.35 -6.29 16 6 C 0.46 8.95 6.41 36.01 0.23 9.18 16 7 O -0.50 -10.95 13.12 -18.75 -0.25 -11.20 16 8 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 9 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.01 -0.09 5.00 -104.67 -0.52 -0.61 16 19 C -0.16 -2.05 9.29 -39.41 -0.37 -2.42 16 20 C 0.16 1.92 6.68 -39.24 -0.26 1.66 16 21 O -0.31 -3.39 10.50 -19.43 -0.20 -3.59 16 22 C 0.03 0.17 9.81 101.05 0.99 1.16 16 23 C -0.30 -3.06 8.02 -39.29 -0.32 -3.37 16 24 C 0.16 1.86 6.68 -39.24 -0.26 1.60 16 25 O -0.31 -3.23 10.50 -19.42 -0.20 -3.43 16 26 C 0.03 0.16 9.81 101.05 0.99 1.16 16 27 C -0.18 -2.15 9.61 -39.41 -0.38 -2.53 16 28 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 29 H 0.06 0.99 7.80 -51.93 -0.40 0.58 16 30 H 0.06 0.98 6.06 -51.93 -0.31 0.66 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.14 1.88 7.63 -52.49 -0.40 1.48 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 41 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 42 H 0.13 1.01 4.54 -52.48 -0.24 0.77 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 45 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 46 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -33.37 380.83 -7.12 -40.49 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.08 Total: -0.76 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.49 Total: -11.14 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.01 Total: -24.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.37 -7.12 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851473912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.247 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds