Wall clock time and date at job start Tue Mar 31 2020 13:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 H 1.09003 * 109.46818 * 54.99679 * 3 2 1 5 5 O 1.45198 * 109.46946 * 295.00234 * 3 2 1 6 6 C 1.34230 * 117.00173 * 89.99709 * 5 3 2 7 7 O 1.20822 * 120.00010 * 359.97438 * 6 5 3 8 8 C 1.50706 * 119.99763 * 180.02562 * 6 5 3 9 9 C 1.53002 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99769 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47118 * 89.99790 * 14 12 10 16 16 H 1.48499 * 109.47134 * 210.00310 * 14 12 10 17 17 H 1.48498 * 109.47011 * 329.99931 * 14 12 10 18 18 C 1.50693 * 109.47132 * 175.00188 * 3 2 1 19 19 C 1.38173 * 119.94743 * 84.72481 * 18 3 2 20 20 C 1.38775 * 120.05473 * 179.76821 * 19 18 3 21 21 O 1.35900 * 120.02961 * 180.23622 * 20 19 18 22 22 C 1.42898 * 117.00138 * 180.29673 * 21 20 19 23 23 C 1.38635 * 119.94350 * 0.52698 * 20 19 18 24 24 C 1.38629 * 119.89189 * 359.72133 * 23 20 19 25 25 O 1.35898 * 120.02814 * 179.97438 * 24 23 20 26 26 C 1.42900 * 116.99872 * 0.02562 * 25 24 23 27 27 C 1.38176 * 119.94472 * 264.99612 * 18 3 2 28 28 H 1.09009 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47098 * 299.99854 * 1 2 3 30 30 H 1.08995 * 109.47263 * 60.00199 * 1 2 3 31 31 H 1.08997 * 109.47098 * 240.00146 * 2 1 3 32 32 H 1.09005 * 109.47254 * 119.99799 * 2 1 3 33 33 H 1.09000 * 109.47318 * 299.99486 * 8 6 5 34 34 H 1.09000 * 109.47161 * 60.00117 * 8 6 5 35 35 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 36 36 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 37 37 H 0.97000 * 120.00540 * 179.97438 * 13 12 10 38 38 H 1.07998 * 119.97411 * 359.97438 * 19 18 3 39 39 H 1.08998 * 109.47296 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.46589 * 299.99283 * 22 21 20 41 41 H 1.09001 * 109.47161 * 59.99530 * 22 21 20 42 42 H 1.08003 * 120.05352 * 179.75093 * 23 20 19 43 43 H 1.09002 * 109.46878 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47736 * 299.99854 * 26 25 24 45 45 H 1.09006 * 109.47042 * 60.00239 * 26 25 24 46 46 H 1.08001 * 119.97140 * 359.97438 * 27 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6558 2.0917 -1.2407 6 6 0.4726 2.7254 -1.2559 7 8 -0.2193 2.7369 -0.2656 8 6 0.0069 3.4215 -2.5088 9 6 -1.3613 4.0593 -2.2592 10 6 -1.8274 4.7549 -3.5121 11 1 -1.2098 4.7429 -4.3980 12 6 -3.0428 5.4058 -3.5279 13 7 -3.7951 5.4200 -2.4493 14 14 -3.6209 6.2674 -5.0812 15 1 -4.4001 5.3164 -5.9140 16 1 -4.4784 7.4235 -4.7161 17 1 -2.4435 6.7474 -5.8484 18 6 3.5418 1.4443 0.1238 19 6 4.3271 1.3005 -1.0040 20 6 5.7104 1.3066 -0.8932 21 8 6.4822 1.1699 -2.0033 22 6 7.8986 1.1787 -1.8139 23 6 6.3042 1.4463 0.3517 24 6 5.5142 1.5853 1.4824 25 8 6.0934 1.7218 2.7041 26 6 7.5217 1.7141 2.7495 27 6 4.1314 1.5841 1.3656 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7237 4.1958 -2.7822 34 1 -0.0721 2.6969 -3.3192 35 1 -2.0784 3.2854 -1.9855 36 1 -1.2819 4.7841 -1.4488 37 1 -4.6500 5.8782 -2.4601 38 1 3.8640 1.1865 -1.9730 39 1 8.3947 1.0612 -2.7773 40 1 8.1989 2.1245 -1.3631 41 1 8.1823 0.3566 -1.1568 42 1 7.3806 1.4473 0.4405 43 1 7.8530 1.8313 3.7813 44 1 7.8927 0.7688 2.3535 45 1 7.9087 2.5368 2.1482 46 1 3.5155 1.6924 2.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851473912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:02 Heat of formation + Delta-G solvation = -171.008059 kcal Electronic energy + Delta-G solvation = -27050.105844 eV Core-core repulsion = 23097.595944 eV Total energy + Delta-G solvation = -3952.509900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94892 -41.36772 -39.81439 -38.65982 -37.15718 -35.63206 -34.67505 -33.03963 -31.73352 -31.35081 -29.06333 -28.24153 -27.49543 -26.99254 -24.32227 -23.52762 -23.09041 -21.83247 -21.22148 -19.56896 -19.14183 -18.26024 -17.86986 -17.59798 -17.08649 -16.95236 -16.89609 -16.69551 -16.44335 -16.41080 -15.67754 -15.40471 -15.28668 -14.87893 -14.29849 -14.26352 -14.07302 -13.74952 -13.47356 -13.33012 -13.24903 -13.18180 -12.93013 -12.82754 -12.53578 -12.48303 -12.44264 -12.18843 -12.17632 -11.98145 -11.93677 -11.70743 -11.68957 -11.37775 -11.24308 -11.17449 -10.56734 -9.70308 -9.06997 -8.19092 -6.32610 0.09859 0.38263 1.30093 1.43219 1.45745 1.56501 1.68060 2.23086 2.32553 2.43992 2.59732 3.14583 3.42449 3.79888 3.87597 3.90202 3.95962 4.02518 4.04829 4.29031 4.30342 4.31674 4.35832 4.38149 4.41816 4.45165 4.46187 4.53049 4.64538 4.72804 4.73506 4.78161 4.90024 4.95000 5.06359 5.11785 5.15395 5.30017 5.38131 5.46141 5.47599 5.57466 5.57864 5.81952 6.14832 6.16294 6.46256 6.82278 6.90171 7.37362 8.93484 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.002536 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.697401 B =11040.017264 C =11695.927812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.124 3.876 4 H 0.084 0.916 5 O -0.347 6.347 6 C 0.466 3.534 7 O -0.530 6.530 8 C -0.096 4.096 9 C 0.042 3.958 10 C -0.544 4.544 11 H 0.075 0.925 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.257 1.257 18 C -0.013 4.013 19 C -0.176 4.176 20 C 0.160 3.840 21 O -0.329 6.329 22 C 0.015 3.985 23 C -0.287 4.287 24 C 0.163 3.837 25 O -0.329 6.329 26 C 0.015 3.985 27 C -0.189 4.189 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.113 0.887 35 H -0.008 1.008 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.163 0.837 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.312 -12.404 6.364 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.069 3.931 4 H 0.102 0.898 5 O -0.265 6.265 6 C 0.310 3.690 7 O -0.419 6.419 8 C -0.133 4.133 9 C 0.005 3.995 10 C -0.582 4.582 11 H 0.094 0.906 12 C -0.201 4.201 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.181 1.181 18 C -0.014 4.014 19 C -0.195 4.195 20 C 0.114 3.886 21 O -0.243 6.243 22 C -0.079 4.079 23 C -0.306 4.306 24 C 0.117 3.883 25 O -0.242 6.242 26 C -0.079 4.079 27 C -0.208 4.208 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.181 0.819 43 H 0.139 0.861 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 27.863 -12.364 6.743 31.220 hybrid contribution -0.519 0.613 -0.197 0.827 sum 27.344 -11.751 6.546 30.473 Atomic orbital electron populations 1.21812 0.95518 1.02139 1.01213 1.21924 0.95904 0.93452 1.04800 1.21603 0.90810 0.94813 0.85847 0.89835 1.86578 1.37073 1.63712 1.39119 1.24352 0.78436 0.75107 0.91069 1.90623 1.55595 1.58638 1.37053 1.21514 0.99148 1.00315 0.92319 1.18763 0.90381 0.94363 0.96022 1.21640 1.04206 1.33774 0.98552 0.90647 1.26082 0.96894 0.97191 0.99976 1.70155 1.12540 1.44308 1.30474 0.85332 0.78561 0.77815 0.78631 1.19651 1.21105 1.18085 1.18979 0.92699 0.97121 0.92581 1.20211 0.90687 1.08923 0.99651 1.18743 0.90577 0.93522 0.85712 1.86105 1.20558 1.87299 1.30296 1.23411 0.76452 1.02436 1.05573 1.21468 1.01761 1.16037 0.91330 1.18605 0.91763 0.93603 0.84361 1.86086 1.24551 1.87392 1.26195 1.23416 0.76204 1.02504 1.05756 1.20143 0.92560 1.10495 0.97639 0.90508 0.93248 0.95221 0.89829 0.87926 0.87132 0.86861 0.98999 0.99196 0.92760 0.84962 0.86172 0.91630 0.91233 0.81942 0.86077 0.91241 0.91656 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 8.56 71.98 0.62 -3.74 16 2 C -0.12 -3.08 5.63 30.59 0.17 -2.90 16 3 C 0.12 3.63 2.46 29.85 0.07 3.70 16 4 H 0.08 2.68 7.06 -2.39 -0.02 2.66 16 5 O -0.35 -11.82 8.97 -51.41 -0.46 -12.28 16 6 C 0.47 18.84 6.41 71.24 0.46 19.29 16 7 O -0.53 -24.57 13.12 21.98 0.29 -24.28 16 8 C -0.10 -4.00 5.75 29.85 0.17 -3.83 16 9 C 0.04 2.31 4.26 29.85 0.13 2.44 16 10 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 11 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 12 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 13 N -0.93 -58.68 13.29 21.45 0.28 -58.40 16 14 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 C -0.01 -0.35 5.00 -19.90 -0.10 -0.45 16 19 C -0.18 -4.52 9.29 22.38 0.21 -4.31 16 20 C 0.16 3.56 6.68 22.49 0.15 3.71 16 21 O -0.33 -6.57 10.50 -92.42 -0.97 -7.54 16 22 C 0.02 0.15 9.81 113.37 1.11 1.26 16 23 C -0.29 -5.26 8.02 22.46 0.18 -5.08 16 24 C 0.16 3.45 6.68 22.49 0.15 3.60 16 25 O -0.33 -6.14 10.50 -92.40 -0.97 -7.11 16 26 C 0.02 0.14 9.81 113.37 1.11 1.25 16 27 C -0.19 -4.57 9.61 22.38 0.22 -4.35 16 28 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.05 1.57 7.80 -2.39 -0.02 1.55 16 30 H 0.03 1.02 6.06 -2.39 -0.01 1.00 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 34 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 35 H -0.01 -0.51 8.10 -2.38 -0.02 -0.53 16 36 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.13 3.53 7.63 -2.91 -0.02 3.51 16 39 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 41 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 42 H 0.16 1.87 4.54 -2.91 -0.01 1.85 16 43 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 45 H 0.06 0.46 7.66 -2.38 -0.02 0.45 16 46 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -74.80 380.83 6.51 -68.29 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.97 Total: 14.79 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 5.34 Total: -19.79 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.28 Total: -58.40 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -2.11 Total: -51.21 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.80 6.51 -68.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851473912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.719 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds