Wall clock time and date at job start Tue Mar 31 2020 13:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47470 * 2 1 4 4 C 1.52997 * 109.47470 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47126 * 54.99472 * 4 3 2 6 6 O 1.42897 * 109.46919 * 295.00108 * 4 3 2 7 7 C 1.42900 * 114.00376 * 150.00121 * 6 4 3 8 8 C 1.52998 * 109.47825 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47334 * 175.00161 * 4 3 2 10 10 O 1.20826 * 120.00377 * 114.99664 * 9 4 3 11 11 O 1.34228 * 119.99741 * 295.00077 * 9 4 3 12 12 C 1.45201 * 117.00299 * 179.97438 * 11 9 4 13 13 C 1.50699 * 109.47482 * 179.97438 * 12 11 9 14 14 C 1.38303 * 119.92793 * 269.72927 * 13 12 11 15 15 C 1.38099 * 120.06745 * 179.72490 * 14 13 12 16 16 C 1.38880 * 119.92697 * 0.56617 * 15 14 13 17 17 O 1.35756 * 120.06681 * 179.67921 * 16 15 14 18 18 C 1.34831 * 116.99823 * 174.48542 * 17 16 15 19 19 H 1.08000 * 120.00152 * 5.06122 * 18 17 16 20 20 C 1.38654 * 120.00240 * 185.06031 * 18 17 16 21 21 N 1.31554 * 119.99592 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00397 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46683 * 90.00086 * 22 20 18 24 24 H 1.48499 * 109.47188 * 209.99688 * 22 20 18 25 25 H 1.48497 * 109.46951 * 330.00493 * 22 20 18 26 26 C 1.38880 * 119.86420 * 359.70425 * 16 15 14 27 27 C 1.38092 * 119.92876 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47106 * 299.99815 * 1 2 3 30 30 H 1.08994 * 109.47134 * 60.00004 * 1 2 3 31 31 H 1.08997 * 109.47524 * 239.99535 * 2 1 3 32 32 H 1.09007 * 109.47283 * 120.00151 * 2 1 3 33 33 H 1.09001 * 109.46678 * 59.99485 * 3 2 1 34 34 H 1.08999 * 109.46767 * 300.00547 * 3 2 1 35 35 H 1.09005 * 109.47219 * 59.99092 * 7 6 4 36 36 H 1.09005 * 109.46872 * 300.00245 * 7 6 4 37 37 H 1.09005 * 109.46716 * 299.99884 * 8 7 6 38 38 H 1.09000 * 109.47374 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.47076 * 59.99287 * 8 7 6 40 40 H 1.09004 * 109.46935 * 300.00198 * 12 11 9 41 41 H 1.09002 * 109.46641 * 59.99653 * 12 11 9 42 42 H 1.07993 * 119.96701 * 359.96994 * 14 13 12 43 43 H 1.07995 * 120.03771 * 180.26742 * 15 14 13 44 44 H 0.97007 * 120.00114 * 180.02562 * 21 20 18 45 45 H 1.08007 * 120.03241 * 179.97438 * 26 16 15 46 46 H 1.08001 * 119.96312 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 5.3064 0.2090 1.0988 8 6 5.7171 -0.3584 2.4591 9 6 4.0723 2.8578 -0.1244 10 8 4.6910 3.3610 0.7833 11 8 3.8324 3.5597 -1.2432 12 6 4.3455 4.9171 -1.2927 13 6 3.9827 5.5435 -2.6144 14 6 4.8436 5.4306 -3.6909 15 6 4.5114 5.9986 -4.9051 16 6 3.3168 6.6938 -5.0411 17 8 2.9904 7.2589 -6.2315 18 6 1.7681 7.8197 -6.3282 19 1 1.1306 7.8785 -5.4584 20 6 1.3295 8.3209 -7.5443 21 7 2.1058 8.2488 -8.6039 22 14 -0.3643 9.0972 -7.6785 23 1 -0.2657 10.5519 -7.3967 24 1 -0.8948 8.8937 -9.0505 25 1 -1.2786 8.4633 -6.6949 26 6 2.4571 6.8102 -3.9566 27 6 2.7924 6.2351 -2.7467 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 6.0603 0.9193 0.7592 36 1 5.2210 -0.6031 0.3767 37 1 5.8026 0.4540 3.1808 38 1 6.6781 -0.8644 2.3666 39 1 4.9633 -1.0685 2.7991 40 1 3.9090 5.5003 -0.4818 41 1 5.4300 4.8997 -1.1847 42 1 5.7747 4.8944 -3.5831 43 1 5.1820 5.9065 -5.7465 44 1 1.7992 8.5998 -9.4547 45 1 1.5275 7.3506 -4.0592 46 1 2.1241 6.3249 -1.9031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859839996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:05 Heat of formation + Delta-G solvation = -152.591055 kcal Electronic energy + Delta-G solvation = -26426.255065 eV Core-core repulsion = 22474.543787 eV Total energy + Delta-G solvation = -3951.711278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66955 -39.16243 -38.43163 -36.88187 -35.96538 -35.20744 -32.46390 -31.85638 -30.70368 -30.27028 -29.43094 -26.26902 -25.32233 -24.39615 -23.19978 -22.08098 -21.49394 -21.03328 -20.58581 -18.10901 -17.94839 -17.51446 -17.09706 -16.45323 -16.26221 -15.48795 -15.01995 -15.00981 -14.62630 -14.56847 -14.35401 -13.73181 -13.66874 -13.58331 -13.14100 -13.08853 -12.82723 -12.79472 -12.45574 -12.35393 -12.29988 -12.04236 -11.75071 -11.63455 -11.43331 -11.40238 -11.27961 -11.04298 -10.87836 -10.84077 -10.77623 -10.67921 -10.51101 -10.44989 -9.75751 -9.43070 -8.92238 -8.29013 -7.35050 -6.54039 -4.12689 1.90323 2.12428 2.13873 2.77009 3.08426 3.09377 3.14168 3.35920 3.89729 4.35107 4.46809 4.56262 4.70977 4.74449 4.82873 4.91797 4.98213 5.02720 5.05964 5.13989 5.18330 5.22874 5.27220 5.29142 5.45926 5.53778 5.59587 5.61392 5.62917 5.64284 5.74655 5.80241 5.86432 5.94651 6.08169 6.11008 6.31213 6.49219 6.57515 6.69824 6.78842 6.95043 7.13039 7.25099 7.33692 7.69455 7.78076 7.90690 8.91186 9.58908 10.63351 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.002328 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.151429 B =12026.407767 C =13059.250883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.103 3.897 5 H 0.099 0.901 6 O -0.352 6.352 7 C 0.051 3.949 8 C -0.149 4.149 9 C 0.432 3.568 10 O -0.501 6.501 11 O -0.349 6.349 12 C 0.129 3.871 13 C -0.204 4.204 14 C -0.049 4.049 15 C -0.196 4.196 16 C 0.163 3.837 17 O -0.172 6.172 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.943 3.057 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.237 4.237 27 C -0.044 4.044 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.130 0.870 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -15.845 16.561 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.150 4.150 4 C 0.043 3.957 5 H 0.116 0.884 6 O -0.271 6.271 7 C -0.025 4.025 8 C -0.206 4.206 9 C 0.274 3.726 10 O -0.389 6.389 11 O -0.266 6.266 12 C 0.057 3.943 13 C -0.205 4.205 14 C -0.067 4.067 15 C -0.215 4.215 16 C 0.108 3.892 17 O -0.074 6.074 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.257 4.257 27 C -0.063 4.063 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.148 0.852 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.843 -15.540 16.511 22.748 hybrid contribution -0.529 0.615 -0.230 0.843 sum 1.314 -14.925 16.281 22.126 Atomic orbital electron populations 1.21765 0.95386 1.01752 1.02154 1.21473 0.96190 0.95516 1.02556 1.21721 0.89757 0.99111 1.04417 1.21698 0.96690 0.87826 0.89514 0.88362 1.88029 1.36836 1.71651 1.30556 1.22652 0.85446 0.95483 0.98933 1.21709 1.01289 1.01439 0.96137 1.24541 0.77518 0.89961 0.80617 1.90651 1.37533 1.70814 1.39866 1.86658 1.72007 1.28638 1.39305 1.21709 0.98305 0.78011 0.96320 1.18854 0.98793 1.08207 0.94662 1.20499 0.97847 0.96832 0.91553 1.20192 0.97856 1.05237 0.98208 1.19440 0.92989 0.90193 0.86575 1.83979 1.34051 1.61882 1.27487 1.21370 0.90631 1.37821 0.97117 0.88864 1.25330 0.99866 0.97160 0.94131 1.70038 1.36431 1.42414 1.00387 0.85685 0.80046 0.79282 0.78286 1.19787 1.20164 1.19092 1.21141 1.02771 1.08495 0.93254 1.20614 0.94357 0.94867 0.96437 0.92623 0.92638 0.92393 0.91831 0.91157 0.90393 0.88818 0.93052 0.92923 0.91593 0.90983 0.91799 0.91228 0.91306 0.86956 0.86207 0.91853 0.85248 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.92 5.83 -26.73 -0.16 -1.08 16 3 C -0.11 -1.05 4.90 -26.73 -0.13 -1.18 16 4 C 0.10 1.09 2.63 -27.89 -0.07 1.02 16 5 H 0.10 0.85 7.79 -51.93 -0.40 0.45 16 6 O -0.35 -3.92 9.06 -55.13 -0.50 -4.42 16 7 C 0.05 0.45 6.46 37.16 0.24 0.69 16 8 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 9 C 0.43 6.00 7.24 36.00 0.26 6.26 16 10 O -0.50 -8.28 16.26 -25.46 -0.41 -8.69 16 11 O -0.35 -5.16 10.17 -39.25 -0.40 -5.56 16 12 C 0.13 1.94 5.59 36.01 0.20 2.14 16 13 C -0.20 -3.53 5.52 -104.58 -0.58 -4.10 16 14 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 15 C -0.20 -4.03 9.99 -39.39 -0.39 -4.42 16 16 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 17 O -0.17 -4.78 9.76 0.03 0.00 -4.78 16 18 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 22 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 26 C -0.24 -5.03 9.17 -39.40 -0.36 -5.39 16 27 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.55 7.82 -51.92 -0.41 0.15 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 41 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.13 2.72 5.64 -52.48 -0.30 2.43 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -31.51 392.89 -8.00 -39.51 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.27 Total: 2.71 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.07 Total: -15.81 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.76 Total: -23.86 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.31 Total: -23.45 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.51 -8.00 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859839996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.083 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds