Wall clock time and date at job start Tue Mar 31 2020 13:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40473 * 120.15031 * 2 1 4 4 C 1.34950 * 120.29819 * 180.02562 * 3 2 1 5 5 N 1.36483 * 120.61308 * 0.03941 * 4 3 2 6 6 C 1.36831 * 132.57190 * 179.97438 * 5 4 3 7 7 C 1.35104 * 107.17892 * 180.02562 * 6 5 4 8 8 C 1.50705 * 125.68555 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47043 * 94.99990 * 8 7 6 10 10 C 1.46498 * 120.00098 * 89.99954 * 9 8 7 11 11 C 1.39080 * 119.99937 * 269.99949 * 9 8 7 12 12 C 1.38744 * 119.65745 * 4.73149 * 11 9 8 13 13 C 1.40784 * 118.66541 * 179.76136 * 12 11 9 14 14 C 1.41559 * 120.98950 * 180.25652 * 13 12 11 15 15 H 1.07999 * 119.99898 * 336.36143 * 14 13 12 16 16 C 1.40024 * 119.99982 * 156.36798 * 14 13 12 17 17 N 1.30749 * 119.99742 * 343.14190 * 16 14 13 18 18 Si 1.86793 * 120.00076 * 163.14610 * 16 14 13 19 19 H 1.48496 * 109.47312 * 89.99755 * 18 16 14 20 20 H 1.48507 * 109.47099 * 209.99793 * 18 16 14 21 21 H 1.48505 * 109.47359 * 329.99794 * 18 16 14 22 22 C 1.41182 * 118.01633 * 0.49652 * 13 12 11 23 23 C 1.36554 * 119.14610 * 359.75410 * 22 13 12 24 24 N 1.32100 * 121.27044 * 359.97438 * 23 22 13 25 25 N 1.33508 * 108.62668 * 0.26315 * 7 6 5 26 26 C 1.32557 * 109.15815 * 359.56315 * 25 7 6 27 27 C 1.36021 * 120.15496 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46932 * 269.97407 * 1 2 3 29 29 H 1.09001 * 109.47376 * 29.97592 * 1 2 3 30 30 H 1.08997 * 109.47175 * 149.97865 * 1 2 3 31 31 H 1.08005 * 119.84752 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.69309 * 180.02562 * 4 3 2 33 33 H 1.07998 * 126.41108 * 359.97438 * 6 5 4 34 34 H 1.08992 * 109.47062 * 214.99668 * 8 7 6 35 35 H 1.08999 * 109.47127 * 335.00463 * 8 7 6 36 36 H 1.08997 * 109.47271 * 90.00215 * 10 9 8 37 37 H 1.09000 * 109.47178 * 210.00266 * 10 9 8 38 38 H 1.08996 * 109.46843 * 329.99967 * 10 9 8 39 39 H 1.07995 * 120.66663 * 0.02562 * 12 11 9 40 40 H 0.96997 * 119.99618 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.42680 * 179.78221 * 22 13 12 42 42 H 1.08002 * 119.36615 * 179.97438 * 23 22 13 43 43 H 1.08002 * 120.33345 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2147 0.0000 4 6 3.5621 1.2182 -0.0005 5 7 4.2601 0.0454 -0.0019 6 6 5.5995 -0.2347 -0.0031 7 6 5.7259 -1.5798 -0.0047 8 6 7.0268 -2.3406 -0.0070 9 7 7.3891 -2.6925 1.3682 10 6 6.9322 -3.9593 1.9448 11 6 8.1669 -1.8238 2.1264 12 6 8.5133 -0.5837 1.6095 13 6 9.2970 0.2811 2.3969 14 6 9.6742 1.5596 1.9205 15 1 9.7103 1.7510 0.8582 16 6 10.0007 2.5761 2.8265 17 7 9.6514 2.4698 4.0819 18 14 10.9353 4.0839 2.2415 19 1 9.9710 5.1249 1.8035 20 1 11.7651 4.6141 3.3531 21 1 11.8127 3.7116 1.1027 22 6 9.6998 -0.1669 3.6738 23 6 9.3143 -1.4071 4.0956 24 7 8.5738 -2.1913 3.3330 25 7 4.5062 -2.1227 -0.0103 26 6 3.5995 -1.1557 -0.0028 27 6 2.1903 -1.1761 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6725 2.1500 0.0004 32 1 4.0947 2.1578 -0.0001 33 1 6.4048 0.4848 -0.0036 34 1 6.9148 -3.2500 -0.5972 35 1 7.8101 -1.7195 -0.4414 36 1 7.6699 -4.7365 1.7451 37 1 6.8077 -3.8445 3.0215 38 1 5.9789 -4.2395 1.4967 39 1 8.1847 -0.2861 0.6248 40 1 9.8779 3.1737 4.7096 41 1 10.3047 0.4634 4.3089 42 1 9.6208 -1.7535 5.0716 43 1 1.6583 -2.1160 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158860066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:16 Heat of formation + Delta-G solvation = 127.104709 kcal Electronic energy + Delta-G solvation = -26213.957915 eV Core-core repulsion = 22646.269577 eV Total energy + Delta-G solvation = -3567.688338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.61394 -38.66351 -37.75293 -35.69189 -34.11546 -33.77621 -31.16372 -30.47589 -29.89000 -28.83663 -28.19876 -26.19596 -25.61450 -24.16020 -23.03599 -21.88644 -21.24190 -20.64212 -19.69656 -17.86221 -17.30642 -16.67708 -15.83257 -15.71467 -15.29487 -15.07838 -14.83124 -14.59442 -14.21894 -14.10403 -13.74985 -13.63227 -13.33220 -13.09721 -12.74239 -12.47807 -12.34608 -12.18432 -11.95589 -11.68231 -11.55034 -11.40387 -11.36616 -11.31388 -11.07654 -10.79552 -10.59612 -10.30468 -9.90654 -9.78992 -9.38638 -8.76025 -8.57159 -7.95095 -7.84727 -7.62384 -6.83960 -6.35561 -4.56360 0.77966 1.36529 2.74236 2.78769 2.94685 3.01364 3.05122 3.07932 3.35767 3.54800 3.85614 4.13828 4.21741 4.46098 4.68136 4.73633 4.78776 5.04477 5.12515 5.35089 5.35850 5.53565 5.56456 5.61138 5.79095 5.81935 5.84709 5.92656 5.95798 6.10891 6.14648 6.25815 6.30718 6.49249 6.55889 6.77325 6.81535 6.91148 6.97479 7.05913 7.23524 7.28884 7.57451 7.75589 7.93752 8.09790 8.13610 8.40139 8.66402 8.82496 8.92361 9.80477 10.10593 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.003977 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.769866 B = 7039.314197 C = 8769.958620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.069 3.931 5 N -0.366 5.366 6 C -0.067 4.067 7 C 0.046 3.954 8 C 0.217 3.783 9 N -0.619 5.619 10 C 0.116 3.884 11 C 0.401 3.599 12 C -0.333 4.333 13 C 0.157 3.843 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.080 3.920 17 N -0.785 5.785 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.245 4.245 23 C 0.115 3.885 24 N -0.618 5.618 25 N -0.484 5.484 26 C 0.217 3.783 27 C -0.084 4.084 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.281 0.719 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -0.419 -8.087 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.083 4.083 3 C -0.172 4.172 4 C -0.053 4.053 5 N -0.038 5.038 6 C -0.199 4.199 7 C -0.087 4.087 8 C 0.091 3.909 9 N -0.335 5.335 10 C -0.028 4.028 11 C 0.172 3.828 12 C -0.360 4.360 13 C 0.149 3.851 14 C -0.490 4.490 15 H 0.096 0.904 16 C -0.140 4.140 17 N -0.410 5.410 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.269 4.269 23 C -0.034 4.034 24 N -0.341 5.341 25 N -0.205 5.205 26 C -0.027 4.027 27 C -0.104 4.104 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.204 0.796 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.395 -2.046 -7.580 15.527 hybrid contribution 0.817 2.696 -0.251 2.828 sum -12.578 0.649 -7.831 14.831 Atomic orbital electron populations 1.20726 0.89989 1.03046 1.02675 1.19673 0.96732 0.92128 0.99776 1.20626 0.92097 0.99071 1.05405 1.21651 0.93033 0.89149 1.01504 1.42837 1.07636 1.07321 1.46019 1.22778 0.83102 0.98759 1.15243 1.21629 0.94621 0.90829 1.01657 1.19467 0.89313 0.98226 0.83934 1.45922 1.56022 1.19652 1.11944 1.21258 0.97207 0.84869 0.99477 1.17925 0.89093 0.87082 0.88729 1.21141 1.14524 0.96944 1.03368 1.17571 0.85531 0.91492 0.90483 1.19540 1.40455 0.94722 0.94297 0.90360 1.25939 0.93509 1.00118 0.94389 1.69811 1.34092 1.32993 1.04073 0.86339 0.80199 0.80637 0.79719 1.19532 1.19990 1.18341 1.21771 1.08209 0.96984 0.99977 1.21374 0.94264 0.91212 0.96558 1.66767 1.22862 1.37851 1.06574 1.70590 0.98472 1.29025 1.22385 1.20894 0.94271 0.80707 1.06783 1.20013 0.88347 0.99243 1.02796 0.90805 0.91221 0.91198 0.83549 0.81988 0.79598 0.89960 0.89008 0.94902 0.91487 0.92916 0.88437 0.90780 0.86040 0.86542 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.02 36.01 0.36 -0.37 16 2 C -0.08 -0.80 5.88 -104.58 -0.62 -1.42 16 3 C -0.15 -1.52 9.67 -39.91 -0.39 -1.91 16 4 C 0.07 0.85 10.95 -16.65 -0.18 0.67 16 5 N -0.37 -5.81 2.94 -62.66 -0.18 -5.99 16 6 C -0.07 -1.17 11.08 -16.44 -0.18 -1.35 16 7 C 0.05 0.83 6.64 -82.98 -0.55 0.28 16 8 C 0.22 3.75 5.61 -5.19 -0.03 3.72 16 9 N -0.62 -12.56 2.97 -183.17 -0.54 -13.10 16 10 C 0.12 2.12 10.42 59.85 0.62 2.74 16 11 C 0.40 9.59 7.37 -154.98 -1.14 8.45 16 12 C -0.33 -8.12 8.87 -38.43 -0.34 -8.46 16 13 C 0.16 4.16 5.60 -106.55 -0.60 3.57 16 14 C -0.46 -11.79 9.12 -37.65 -0.34 -12.14 16 15 H 0.08 1.91 7.90 -52.49 -0.41 1.49 16 16 C 0.08 1.95 5.20 -17.34 -0.09 1.86 16 17 N -0.78 -19.84 10.92 55.55 0.61 -19.23 16 18 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 C -0.24 -6.44 8.74 -39.07 -0.34 -6.78 16 23 C 0.12 2.86 11.10 -18.04 -0.20 2.66 16 24 N -0.62 -15.45 9.14 -12.82 -0.12 -15.57 16 25 N -0.48 -8.84 11.32 -9.01 -0.10 -8.94 16 26 C 0.22 3.57 7.81 -156.05 -1.22 2.35 16 27 C -0.08 -1.07 9.75 -39.36 -0.38 -1.46 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.19 3.12 6.95 -52.49 -0.36 2.76 16 34 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.09 1.53 6.37 -51.93 -0.33 1.20 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.33 7.45 -51.93 -0.39 0.94 16 38 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.10 2.16 4.61 -52.49 -0.24 1.92 16 40 H 0.28 6.45 8.29 -40.82 -0.34 6.12 16 41 H 0.12 3.25 6.20 -52.48 -0.33 2.92 16 42 H 0.12 2.57 8.06 -52.49 -0.42 2.14 16 43 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -31.76 360.64 -10.97 -42.73 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.41 Total: 9.31 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -5.62 Total: -7.60 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.34 Total: -62.84 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.76 -10.97 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158860066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.836 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds