Wall clock time and date at job start Tue Mar 31 2020 13:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40473 * 120.15031 * 2 1 4 4 C 1.34950 * 120.29819 * 180.02562 * 3 2 1 5 5 N 1.36483 * 120.61308 * 0.03941 * 4 3 2 6 6 C 1.36831 * 132.57190 * 179.97438 * 5 4 3 7 7 C 1.35104 * 107.17892 * 180.02562 * 6 5 4 8 8 C 1.50705 * 125.68555 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47043 * 94.99990 * 8 7 6 10 10 C 1.46498 * 120.00098 * 89.99954 * 9 8 7 11 11 C 1.39080 * 119.99937 * 269.99949 * 9 8 7 12 12 C 1.38744 * 119.65745 * 4.73149 * 11 9 8 13 13 C 1.40784 * 118.66541 * 179.76136 * 12 11 9 14 14 C 1.41559 * 120.98950 * 180.25652 * 13 12 11 15 15 H 1.07999 * 119.99898 * 336.36143 * 14 13 12 16 16 C 1.40024 * 119.99982 * 156.36798 * 14 13 12 17 17 N 1.30749 * 119.99742 * 343.14190 * 16 14 13 18 18 Si 1.86793 * 120.00076 * 163.14610 * 16 14 13 19 19 H 1.48496 * 109.47312 * 89.99755 * 18 16 14 20 20 H 1.48507 * 109.47099 * 209.99793 * 18 16 14 21 21 H 1.48505 * 109.47359 * 329.99794 * 18 16 14 22 22 C 1.41182 * 118.01633 * 0.49652 * 13 12 11 23 23 C 1.36554 * 119.14610 * 359.75410 * 22 13 12 24 24 N 1.32100 * 121.27044 * 359.97438 * 23 22 13 25 25 N 1.33508 * 108.62668 * 0.26315 * 7 6 5 26 26 C 1.32557 * 109.15815 * 359.56315 * 25 7 6 27 27 C 1.36021 * 120.15496 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46932 * 269.97407 * 1 2 3 29 29 H 1.09001 * 109.47376 * 29.97592 * 1 2 3 30 30 H 1.08997 * 109.47175 * 149.97865 * 1 2 3 31 31 H 1.08005 * 119.84752 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.69309 * 180.02562 * 4 3 2 33 33 H 1.07998 * 126.41108 * 359.97438 * 6 5 4 34 34 H 1.08992 * 109.47062 * 214.99668 * 8 7 6 35 35 H 1.08999 * 109.47127 * 335.00463 * 8 7 6 36 36 H 1.08997 * 109.47271 * 90.00215 * 10 9 8 37 37 H 1.09000 * 109.47178 * 210.00266 * 10 9 8 38 38 H 1.08996 * 109.46843 * 329.99967 * 10 9 8 39 39 H 1.07995 * 120.66663 * 0.02562 * 12 11 9 40 40 H 0.96997 * 119.99618 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.42680 * 179.78221 * 22 13 12 42 42 H 1.08002 * 119.36615 * 179.97438 * 23 22 13 43 43 H 1.08002 * 120.33345 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2147 0.0000 4 6 3.5621 1.2182 -0.0005 5 7 4.2601 0.0454 -0.0019 6 6 5.5995 -0.2347 -0.0031 7 6 5.7259 -1.5798 -0.0047 8 6 7.0268 -2.3406 -0.0070 9 7 7.3891 -2.6925 1.3682 10 6 6.9322 -3.9593 1.9448 11 6 8.1669 -1.8238 2.1264 12 6 8.5133 -0.5837 1.6095 13 6 9.2970 0.2811 2.3969 14 6 9.6742 1.5596 1.9205 15 1 9.7103 1.7510 0.8582 16 6 10.0007 2.5761 2.8265 17 7 9.6514 2.4698 4.0819 18 14 10.9353 4.0839 2.2415 19 1 9.9710 5.1249 1.8035 20 1 11.7651 4.6141 3.3531 21 1 11.8127 3.7116 1.1027 22 6 9.6998 -0.1669 3.6738 23 6 9.3143 -1.4071 4.0956 24 7 8.5738 -2.1913 3.3330 25 7 4.5062 -2.1227 -0.0103 26 6 3.5995 -1.1557 -0.0028 27 6 2.1903 -1.1761 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6725 2.1500 0.0004 32 1 4.0947 2.1578 -0.0001 33 1 6.4048 0.4848 -0.0036 34 1 6.9148 -3.2500 -0.5972 35 1 7.8101 -1.7195 -0.4414 36 1 7.6699 -4.7365 1.7451 37 1 6.8077 -3.8445 3.0215 38 1 5.9789 -4.2395 1.4967 39 1 8.1847 -0.2861 0.6248 40 1 9.8779 3.1737 4.7096 41 1 10.3047 0.4634 4.3089 42 1 9.6208 -1.7535 5.0716 43 1 1.6583 -2.1160 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158860066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:15 Heat of formation + Delta-G solvation = 111.818124 kcal Electronic energy + Delta-G solvation = -26214.620791 eV Core-core repulsion = 22646.269577 eV Total energy + Delta-G solvation = -3568.351214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.76383 -40.44102 -38.86320 -37.27880 -35.74769 -35.05059 -32.75611 -31.97474 -30.91882 -30.55580 -29.43273 -27.81087 -26.99998 -25.69962 -24.13719 -23.31491 -22.68084 -22.28796 -21.14299 -19.35341 -18.72600 -17.73437 -17.48172 -17.14831 -16.67349 -16.56875 -16.25138 -15.89918 -15.61489 -15.58248 -15.13268 -14.84234 -14.77730 -14.25676 -14.20478 -13.98066 -13.61377 -13.41134 -13.18853 -13.02990 -12.94913 -12.87885 -12.67496 -12.60659 -12.47714 -12.41734 -11.97907 -11.73803 -11.51735 -11.21902 -11.13614 -10.49033 -9.90598 -9.78656 -9.72040 -8.74732 -8.68430 -8.12941 -6.52501 -0.18721 0.30384 1.00083 1.18948 1.39366 1.52410 1.59541 1.64248 1.72141 2.19172 2.43937 2.65278 2.82952 3.16465 3.50319 3.78685 3.81472 3.87262 4.05750 4.15530 4.24531 4.30233 4.40590 4.44695 4.57618 4.69415 4.77506 4.83264 4.84256 4.87548 4.93927 4.98198 5.03592 5.06892 5.08284 5.23893 5.26326 5.34470 5.38459 5.58530 5.64118 5.65175 5.89675 6.07379 6.14640 6.37676 6.50050 6.78429 6.87788 6.88660 7.03906 7.89043 8.28896 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.003977 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.769866 B = 7039.314197 C = 8769.958620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.135 4.135 4 C 0.041 3.959 5 N -0.371 5.371 6 C -0.092 4.092 7 C 0.033 3.967 8 C 0.217 3.783 9 N -0.618 5.618 10 C 0.120 3.880 11 C 0.397 3.603 12 C -0.343 4.343 13 C 0.131 3.869 14 C -0.486 4.486 15 H 0.083 0.917 16 C 0.041 3.959 17 N -0.815 5.815 18 Si 0.984 3.016 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.257 1.257 22 C -0.270 4.270 23 C 0.113 3.887 24 N -0.631 5.631 25 N -0.518 5.518 26 C 0.206 3.794 27 C -0.114 4.114 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.189 0.811 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.290 0.710 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 1.095 -9.054 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.062 4.062 3 C -0.156 4.156 4 C -0.081 4.081 5 N -0.043 5.043 6 C -0.224 4.224 7 C -0.101 4.101 8 C 0.092 3.908 9 N -0.334 5.334 10 C -0.023 4.023 11 C 0.166 3.834 12 C -0.369 4.369 13 C 0.123 3.877 14 C -0.517 4.517 15 H 0.101 0.899 16 C -0.177 4.177 17 N -0.440 5.440 18 Si 0.804 3.196 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.181 1.181 22 C -0.295 4.295 23 C -0.037 4.037 24 N -0.355 5.355 25 N -0.240 5.240 26 C -0.037 4.037 27 C -0.134 4.134 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.206 0.794 32 H 0.199 0.801 33 H 0.198 0.802 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.128 0.872 42 H 0.157 0.843 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.547 -0.551 -8.573 17.763 hybrid contribution 1.224 2.254 0.039 2.565 sum -14.324 1.704 -8.534 16.760 Atomic orbital electron populations 1.20856 0.86835 1.04790 1.03855 1.20230 0.98836 0.91247 0.95883 1.21235 0.91279 1.00772 1.02264 1.22299 0.94276 0.88886 1.02604 1.42949 1.07131 1.08329 1.45932 1.22695 0.84024 0.98611 1.17038 1.21602 0.94774 0.91167 1.02510 1.19614 0.89378 0.99307 0.82533 1.46147 1.55030 1.19586 1.12663 1.21283 0.98348 0.84389 0.98304 1.18201 0.88925 0.87582 0.88643 1.21272 1.14562 0.97148 1.03958 1.17964 0.86192 0.92525 0.91062 1.19836 1.41694 0.95224 0.94935 0.89937 1.26830 0.93607 1.03032 0.94181 1.69867 1.34462 1.34383 1.05297 0.85182 0.78720 0.76451 0.79250 1.18403 1.19139 1.18103 1.21749 1.09605 0.97696 1.00401 1.21717 0.93730 0.90828 0.97432 1.66876 1.23446 1.37994 1.07189 1.70516 0.98776 1.30125 1.24577 1.21485 0.95511 0.80689 1.06058 1.20345 0.86936 1.01134 1.05017 0.89634 0.88922 0.90144 0.79369 0.80140 0.80156 0.87813 0.88889 0.93311 0.93374 0.91481 0.87101 0.89915 0.87196 0.84305 0.82359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.02 71.24 0.71 -0.28 16 2 C -0.06 -0.99 5.88 -19.83 -0.12 -1.10 16 3 C -0.14 -2.28 9.67 22.06 0.21 -2.07 16 4 C 0.04 0.95 10.95 83.21 0.91 1.86 16 5 N -0.37 -11.86 2.94 -352.17 -1.04 -12.89 16 6 C -0.09 -3.31 11.08 83.19 0.92 -2.38 16 7 C 0.03 1.21 6.64 41.58 0.28 1.48 16 8 C 0.22 7.62 5.61 85.63 0.48 8.10 16 9 N -0.62 -25.43 2.97 -733.43 -2.18 -27.61 16 10 C 0.12 4.39 10.42 127.77 1.33 5.72 16 11 C 0.40 19.43 7.37 132.90 0.98 20.41 16 12 C -0.34 -17.28 8.87 23.01 0.20 -17.08 16 13 C 0.13 7.16 5.60 -21.11 -0.12 7.04 16 14 C -0.49 -25.61 9.12 23.52 0.21 -25.39 16 15 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 16 C 0.04 1.99 5.20 85.29 0.44 2.43 16 17 N -0.81 -41.86 10.92 21.84 0.24 -41.62 16 18 Si 0.98 36.62 29.59 68.60 2.03 38.65 16 19 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 20 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 21 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 22 C -0.27 -14.70 8.74 22.60 0.20 -14.50 16 23 C 0.11 5.74 11.10 84.26 0.94 6.68 16 24 N -0.63 -32.25 9.14 -194.47 -1.78 -34.03 16 25 N -0.52 -19.30 11.32 -182.40 -2.06 -21.36 16 26 C 0.21 6.81 7.81 134.11 1.05 7.85 16 27 C -0.11 -2.78 9.75 22.42 0.22 -2.56 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.50 8.10 -2.39 -0.02 0.48 16 30 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 33 H 0.18 6.45 6.95 -2.91 -0.02 6.43 16 34 H 0.10 3.14 8.07 -2.39 -0.02 3.12 16 35 H 0.09 3.19 6.37 -2.39 -0.02 3.17 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.93 7.45 -2.39 -0.02 1.91 16 38 H 0.07 2.24 8.07 -2.39 -0.02 2.23 16 39 H 0.11 5.12 4.61 -2.91 -0.01 5.11 16 40 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 41 H 0.11 6.13 6.20 -2.91 -0.02 6.11 16 42 H 0.14 6.22 8.06 -2.91 -0.02 6.19 16 43 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -71.28 360.64 5.10 -66.19 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 1.03 Total: 36.47 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 8.85 Total: -3.79 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -6.82 Total: -137.52 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -71.28 5.10 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158860066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.007 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds