Wall clock time and date at job start Tue Mar 31 2020 13:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 H 1.08998 * 109.47188 * 306.54974 * 3 2 1 5 5 C 1.50703 * 109.47248 * 186.54370 * 3 2 1 6 6 H 1.07993 * 120.00064 * 244.65827 * 5 3 2 7 7 C 1.37880 * 119.99699 * 64.66475 * 5 3 2 8 8 N 1.31516 * 119.99702 * 194.09483 * 7 5 3 9 9 Si 1.86804 * 120.00004 * 14.08887 * 7 5 3 10 10 H 1.48494 * 109.46806 * 91.10256 * 9 7 5 11 11 H 1.48505 * 109.46892 * 211.09891 * 9 7 5 12 12 H 1.48496 * 109.47201 * 331.10103 * 9 7 5 13 13 N 1.46905 * 109.47126 * 66.54298 * 3 2 1 14 14 C 1.46898 * 111.00255 * 257.47849 * 13 3 2 15 15 C 1.53118 * 109.52023 * 273.90412 * 14 13 3 16 16 C 1.53045 * 109.27251 * 182.50468 * 15 14 13 17 17 N 1.46848 * 109.57684 * 59.08410 * 16 15 14 18 18 C 1.39748 * 110.99924 * 174.19228 * 17 16 15 19 19 C 1.38884 * 120.07717 * 11.05810 * 18 17 16 20 20 C 1.38119 * 119.93723 * 180.02562 * 19 18 17 21 21 C 1.38299 * 120.09413 * 0.02562 * 20 19 18 22 22 C 1.38273 * 120.15196 * 359.97438 * 21 20 19 23 23 C 1.38208 * 120.06781 * 359.71721 * 22 21 20 24 24 Cl 1.73595 * 120.05037 * 180.29699 * 23 22 21 25 25 C 1.46841 * 111.19639 * 298.28884 * 17 16 15 26 26 C 1.53041 * 109.52555 * 61.74098 * 25 17 16 27 27 H 1.08999 * 109.47485 * 300.63515 * 1 2 3 28 28 H 1.09001 * 109.47283 * 60.63241 * 1 2 3 29 29 H 1.08995 * 109.47633 * 180.63285 * 1 2 3 30 30 H 1.08995 * 109.47304 * 239.99953 * 2 1 3 31 31 H 1.09008 * 109.47009 * 119.99840 * 2 1 3 32 32 H 0.96997 * 119.99612 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99673 * 133.52259 * 13 3 2 34 34 H 1.08998 * 109.52100 * 34.02977 * 14 13 3 35 35 H 1.09001 * 109.50490 * 302.37747 * 15 14 13 36 36 H 1.09004 * 109.50670 * 62.50130 * 15 14 13 37 37 H 1.09004 * 109.40971 * 299.06617 * 16 15 14 38 38 H 1.08999 * 109.45494 * 179.12695 * 16 15 14 39 39 H 1.07990 * 120.03582 * 0.02562 * 19 18 17 40 40 H 1.07994 * 119.95662 * 179.97438 * 20 19 18 41 41 H 1.07999 * 119.92063 * 179.97438 * 21 20 19 42 42 H 1.08006 * 119.96387 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.46370 * 301.72509 * 25 17 16 44 44 H 1.09004 * 109.46604 * 181.75888 * 25 17 16 45 45 H 1.08996 * 109.50414 * 180.87492 * 26 25 17 46 46 H 1.09003 * 109.52935 * 60.77783 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5841 1.9890 -0.8255 5 6 3.5383 1.4455 -0.1619 6 1 4.1668 1.8145 0.6350 7 6 4.1066 0.9773 -1.3276 8 7 5.3952 0.7182 -1.3730 9 14 3.0463 0.7110 -2.8423 10 1 3.0372 1.9479 -3.6639 11 1 3.5996 -0.4109 -3.6428 12 1 1.6594 0.3841 -2.4245 13 7 1.6834 2.0879 1.2706 14 6 0.5284 2.9798 1.1021 15 6 1.0096 4.3589 0.6425 16 6 -0.1912 5.3009 0.5291 17 7 -0.8605 5.4040 1.8321 18 6 -1.8820 6.3570 1.7963 19 6 -2.2956 6.8888 0.5818 20 6 -3.3051 7.8309 0.5499 21 6 -3.9040 8.2457 1.7255 22 6 -3.4951 7.7189 2.9368 23 6 -2.4899 6.7711 2.9757 24 17 -1.9823 6.1042 4.4959 25 6 -1.3729 4.0996 2.2704 26 6 -0.2073 3.1220 2.4374 27 1 -0.3634 0.5237 0.8842 28 1 -0.3634 0.5040 -0.8956 29 1 -0.3634 -1.0275 0.0113 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 5.7949 0.3884 -2.1930 33 1 2.4715 2.5858 1.6568 34 1 -0.1480 2.5628 0.3561 35 1 1.7170 4.7583 1.3693 36 1 1.4963 4.2695 -0.3287 37 1 -0.8910 4.9085 -0.2088 38 1 0.1500 6.2880 0.2170 39 1 -1.8285 6.5660 -0.3367 40 1 -3.6267 8.2449 -0.3942 41 1 -4.6927 8.9829 1.6973 42 1 -3.9651 8.0447 3.8530 43 1 -2.0672 3.7128 1.5245 44 1 -1.8902 4.2140 3.2230 45 1 -0.5895 2.1496 2.7477 46 1 0.4806 3.5009 3.1933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258537859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:30 Heat of formation + Delta-G solvation = 24.860108 kcal Electronic energy + Delta-G solvation = -25550.654062 eV Core-core repulsion = 22079.639560 eV Total energy + Delta-G solvation = -3471.014503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.53419 -38.37689 -36.53042 -36.33450 -33.60487 -31.93776 -31.43072 -30.61784 -30.34043 -28.60021 -26.61567 -24.00859 -23.47662 -22.40099 -21.94580 -21.41009 -19.90496 -19.37856 -17.92222 -16.93765 -16.22994 -15.93902 -15.32122 -15.01699 -14.82922 -14.36819 -14.07008 -13.92589 -13.78513 -13.52559 -13.40391 -13.09711 -12.72455 -12.59411 -12.17908 -12.13124 -11.85074 -11.76741 -11.69380 -11.55073 -11.34225 -11.02317 -10.98336 -10.82594 -10.75300 -10.34758 -10.32059 -10.00949 -9.81968 -9.67802 -9.31246 -9.12618 -9.03998 -8.47272 -8.05064 -7.41847 -6.14884 -4.10828 0.93961 1.02528 2.06332 3.24013 3.32565 3.34305 3.37114 3.63250 4.37799 4.53567 4.66876 4.79466 4.90282 4.95236 5.01763 5.11476 5.18351 5.24196 5.30614 5.38055 5.48149 5.52982 5.64776 5.81748 5.86996 5.88653 5.90418 5.94874 6.05595 6.06851 6.16051 6.21183 6.24554 6.29630 6.44908 6.48490 6.59356 6.69667 6.76799 6.91746 7.03527 7.07579 7.10004 7.45377 7.63965 7.99804 8.36938 8.60666 8.94230 9.50975 10.98091 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.003174 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.693806 B = 8819.318609 C = 9290.408522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.193 3.807 4 H 0.004 0.996 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.249 1.249 13 N -0.674 5.674 14 C 0.086 3.914 15 C -0.145 4.145 16 C 0.057 3.943 17 N -0.484 5.484 18 C 0.126 3.874 19 C -0.162 4.162 20 C -0.092 4.092 21 C -0.139 4.139 22 C -0.091 4.091 23 C -0.054 4.054 24 Cl -0.058 7.058 25 C 0.053 3.947 26 C -0.103 4.103 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.264 0.736 33 H 0.341 0.659 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.039 0.961 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.649 13.283 6.066 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.021 0.979 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.528 5.528 9 Si 0.689 3.311 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.304 5.304 14 C -0.025 4.025 15 C -0.185 4.185 16 C -0.071 4.071 17 N -0.199 5.199 18 C 0.027 3.973 19 C -0.183 4.183 20 C -0.110 4.110 21 C -0.158 4.158 22 C -0.110 4.110 23 C -0.083 4.083 24 Cl -0.029 7.029 25 C -0.072 4.072 26 C -0.141 4.141 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.389 12.652 6.660 24.091 hybrid contribution -0.367 0.394 -1.920 1.994 sum -19.756 13.046 4.740 24.145 Atomic orbital electron populations 1.21857 0.98750 0.99525 1.00427 1.21878 0.92615 0.99522 1.00792 1.19439 0.95374 0.90706 0.86072 0.97881 1.21265 0.89637 1.43393 1.02701 0.90666 1.24908 0.94724 0.94161 0.98757 1.69975 1.11481 1.43816 1.27561 0.87238 0.82522 0.77910 0.83453 1.20855 1.21376 1.17315 1.60625 1.08331 1.32635 1.28817 1.21698 0.94432 0.90505 0.95845 1.22406 0.96892 0.96214 1.02982 1.22270 0.96235 1.00668 0.87887 1.59057 1.24316 1.07434 1.29076 1.18807 0.90758 0.96008 0.91700 1.21458 0.99137 1.00801 0.96930 1.21115 0.95298 0.96104 0.98516 1.21014 1.01362 1.01595 0.91809 1.20949 0.95669 0.95379 0.99037 1.20617 1.00584 1.00737 0.86313 1.98356 1.90650 1.84344 1.29528 1.22394 0.97374 0.86328 1.01077 1.21589 0.96160 0.97795 0.98561 0.92576 0.94646 0.94698 0.93197 0.92326 0.92665 0.84005 0.91288 0.90825 0.90605 0.93870 0.90435 0.84721 0.85564 0.85390 0.84991 0.94297 0.89447 0.90723 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.91 37.15 0.33 -2.35 16 2 C -0.11 -2.38 4.83 -26.74 -0.13 -2.50 16 3 C 0.19 4.34 1.57 -68.86 -0.11 4.23 16 4 H 0.00 0.08 5.97 -51.93 -0.31 -0.23 16 5 C -0.53 -14.33 9.02 -34.44 -0.31 -14.64 16 6 H 0.08 2.20 7.67 -52.49 -0.40 1.80 16 7 C 0.08 2.17 5.34 -17.82 -0.10 2.08 16 8 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 9 Si 0.86 20.78 25.77 -169.99 -4.38 16.40 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.25 -5.66 5.42 56.52 0.31 -5.35 16 13 N -0.67 -13.00 5.85 -100.83 -0.59 -13.59 16 14 C 0.09 1.38 1.53 -67.59 -0.10 1.27 16 15 C -0.15 -2.19 5.35 -26.65 -0.14 -2.33 16 16 C 0.06 0.72 4.15 -3.83 -0.02 0.70 16 17 N -0.48 -6.14 4.34 -171.10 -0.74 -6.88 16 18 C 0.13 1.49 5.41 -83.73 -0.45 1.04 16 19 C -0.16 -1.67 8.82 -39.39 -0.35 -2.02 16 20 C -0.09 -0.78 10.04 -39.60 -0.40 -1.18 16 21 C -0.14 -1.12 10.04 -39.55 -0.40 -1.51 16 22 C -0.09 -0.83 9.82 -39.58 -0.39 -1.22 16 23 C -0.05 -0.60 6.13 -39.31 -0.24 -0.84 16 24 Cl -0.06 -0.65 25.96 -51.86 -1.35 -2.00 16 25 C 0.05 0.67 5.08 -3.83 -0.02 0.65 16 26 C -0.10 -1.43 5.71 -26.65 -0.15 -1.58 16 27 H 0.06 0.96 6.70 -51.93 -0.35 0.61 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.15 4.85 -51.93 -0.25 0.89 16 31 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.34 6.83 7.61 -39.29 -0.30 6.53 16 34 H 0.07 1.15 6.36 -51.93 -0.33 0.82 16 35 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 36 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 37 H 0.04 0.52 7.25 -51.93 -0.38 0.15 16 38 H 0.08 0.92 7.55 -51.93 -0.39 0.53 16 39 H 0.14 1.28 5.91 -52.49 -0.31 0.97 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 1.06 5.40 -51.93 -0.28 0.78 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -28.86 359.85 -11.00 -39.86 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.17 Total: 6.92 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.97 Total: -20.21 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.56 Total: -46.39 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.38 Total: 16.40 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.35 Total: -2.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.86 -11.00 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258537859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.721 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds