Wall clock time and date at job start Tue Mar 31 2020 13:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47091 * 2 1 4 4 H 1.08997 * 109.47117 * 305.00327 * 3 2 1 5 5 C 1.50697 * 109.47640 * 185.00177 * 3 2 1 6 6 H 1.08004 * 120.00095 * 240.00658 * 5 3 2 7 7 C 1.37872 * 119.99757 * 59.99859 * 5 3 2 8 8 N 1.31513 * 120.00300 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47085 * 90.00300 * 9 7 5 11 11 H 1.48501 * 109.47437 * 210.00156 * 9 7 5 12 12 H 1.48499 * 109.46938 * 330.00485 * 9 7 5 13 13 N 1.46503 * 109.46885 * 65.00032 * 3 2 1 14 14 C 1.37938 * 120.00166 * 275.00224 * 13 3 2 15 15 C 1.36553 * 120.46045 * 359.97438 * 14 13 3 16 16 C 1.40604 * 119.26019 * 179.70171 * 15 14 13 17 17 C 1.48221 * 119.92448 * 180.30210 * 16 15 14 18 18 C 1.39431 * 120.13058 * 359.72538 * 17 16 15 19 19 C 1.37990 * 119.86972 * 179.72553 * 18 17 16 20 20 C 1.38341 * 120.12519 * 0.54840 * 19 18 17 21 21 C 1.38331 * 120.26461 * 359.72738 * 20 19 18 22 22 C 1.37989 * 120.13011 * 359.97438 * 21 20 19 23 23 N 1.32332 * 120.15079 * 0.27646 * 16 15 14 24 24 C 1.33895 * 120.91156 * 0.02562 * 23 16 15 25 25 C 1.38924 * 132.42949 * 179.97438 * 24 23 16 26 26 C 1.38778 * 107.62245 * 180.02562 * 25 24 23 27 27 N 1.31313 * 108.97866 * 0.02562 * 26 25 24 28 28 N 1.37122 * 120.45965 * 180.25179 * 14 13 3 29 29 H 1.09003 * 109.47003 * 299.98992 * 1 2 3 30 30 H 1.09001 * 109.47566 * 60.00079 * 1 2 3 31 31 H 1.09007 * 109.46775 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47272 * 240.00275 * 2 1 3 33 33 H 1.08997 * 109.47789 * 120.00373 * 2 1 3 34 34 H 0.97006 * 120.00207 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00059 * 95.00136 * 13 3 2 36 36 H 1.08002 * 120.37244 * 359.97438 * 15 14 13 37 37 H 1.08005 * 120.06341 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.93748 * 180.27811 * 19 18 17 39 39 H 1.08002 * 119.86450 * 179.70251 * 20 19 18 40 40 H 1.08001 * 119.93640 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.06505 * 180.02562 * 22 21 20 42 42 H 1.08004 * 126.19244 * 0.03731 * 25 24 23 43 43 H 1.07994 * 125.51098 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1431 0.8786 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8803 -1.3813 10 1 6.5539 -0.3517 -0.7601 11 1 6.3834 0.9218 -2.8167 12 1 6.5574 2.0722 -0.6890 13 7 1.6524 2.0974 1.2518 14 6 0.4065 2.6776 1.3698 15 6 -0.4728 2.6474 0.3255 16 6 -1.7385 3.2411 0.4754 17 6 -2.7069 3.2110 -0.6463 18 6 -2.3631 2.6002 -1.8516 19 6 -3.2708 2.5703 -2.8905 20 6 -4.5158 3.1548 -2.7416 21 6 -4.8605 3.7673 -1.5502 22 6 -3.9633 3.7981 -0.5022 23 7 -2.0673 3.8263 1.6158 24 6 -1.2079 3.8650 2.6419 25 6 -1.2972 4.4032 3.9195 26 6 -0.0961 4.1498 4.5670 27 7 0.6987 3.4956 3.7519 28 7 0.0359 3.2975 2.5353 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8292 -0.0602 -2.9504 35 1 2.2719 2.1231 1.9979 36 1 -0.2008 2.1689 -0.6038 37 1 -1.3896 2.1478 -1.9706 38 1 -3.0073 2.0935 -3.8230 39 1 -5.2213 3.1332 -3.5591 40 1 -5.8341 4.2216 -1.4396 41 1 -4.2337 4.2762 0.4277 42 1 -2.1475 4.9244 4.3340 43 1 0.1460 4.4440 5.5775 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001612224190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:19 Heat of formation + Delta-G solvation = 145.820386 kcal Electronic energy + Delta-G solvation = -26798.906706 eV Core-core repulsion = 23232.029941 eV Total energy + Delta-G solvation = -3566.876765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82832 -39.25698 -38.09361 -36.53775 -33.92285 -32.31509 -31.67897 -31.06143 -30.61140 -29.31422 -28.37697 -26.93306 -24.17865 -23.65350 -23.12910 -22.10989 -21.15181 -20.72696 -19.88466 -18.40414 -17.36295 -16.83943 -16.27915 -15.88656 -15.68502 -15.31604 -14.74994 -14.57577 -14.23669 -13.91987 -13.77828 -13.47563 -13.35785 -13.12318 -13.07049 -12.77341 -12.41001 -12.08512 -11.87296 -11.54527 -11.38078 -11.27047 -11.15025 -11.04566 -10.92077 -10.70648 -10.40828 -10.40100 -9.94612 -9.51612 -9.40704 -9.29027 -8.88545 -8.83955 -8.57974 -8.08116 -6.87967 -6.38741 -4.48477 0.61285 1.47659 1.54456 1.88273 2.33143 3.04594 3.12020 3.19781 3.22395 3.69976 3.71495 4.08358 4.18073 4.22716 4.65970 4.93418 4.96757 4.99095 5.11457 5.23035 5.32356 5.49591 5.58836 5.68485 5.82530 5.85412 5.96076 6.01138 6.07799 6.15014 6.20677 6.23712 6.29795 6.50838 6.53568 6.56323 6.60463 6.72575 6.81717 6.88736 6.93171 7.00584 7.05517 7.39814 7.48263 7.67560 7.77131 7.91430 8.19245 8.26054 8.56604 9.19508 10.66880 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.004749 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.522981 B = 5894.361129 C = 8161.444407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.539 4.539 6 H 0.065 0.935 7 C 0.072 3.928 8 N -0.881 5.881 9 Si 0.906 3.094 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.494 3.506 15 C -0.335 4.335 16 C 0.280 3.720 17 C -0.049 4.049 18 C -0.085 4.085 19 C -0.126 4.126 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.073 4.073 23 N -0.534 5.534 24 C 0.314 3.686 25 C -0.307 4.307 26 C 0.091 3.909 27 N -0.334 5.334 28 N -0.349 5.349 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.268 0.732 35 H 0.407 0.593 36 H 0.172 0.828 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.153 0.847 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 3.919 1.517 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.132 4.132 8 N -0.518 5.518 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.298 5.298 14 C 0.267 3.733 15 C -0.367 4.367 16 C 0.127 3.873 17 C -0.050 4.050 18 C -0.104 4.104 19 C -0.144 4.144 20 C -0.126 4.126 21 C -0.151 4.151 22 C -0.092 4.092 23 N -0.253 5.253 24 C 0.084 3.916 25 C -0.339 4.339 26 C -0.089 4.089 27 N -0.157 5.157 28 N -0.127 5.127 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.243 0.757 36 H 0.189 0.811 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.703 3.611 1.387 12.326 hybrid contribution 1.279 -0.062 0.273 1.309 sum -10.425 3.549 1.659 11.137 Atomic orbital electron populations 1.22233 0.98583 0.99864 1.00360 1.22078 0.92402 0.99360 1.03500 1.19165 0.95651 0.89167 0.78984 0.93030 1.21104 0.89818 1.39937 1.06867 0.91712 1.24831 0.99123 0.94232 0.95020 1.69832 1.35529 1.37124 1.09350 0.86363 0.84081 0.78725 0.77566 1.20325 1.20813 1.19719 1.45776 1.10380 1.54039 1.19610 1.17739 0.88040 0.85641 0.81899 1.21142 0.95362 1.18951 1.01255 1.19694 0.90334 0.87261 0.90036 1.18422 0.93508 1.00997 0.92092 1.21429 1.00027 0.97049 0.91910 1.21094 0.93852 1.00470 0.99025 1.21279 0.96583 0.97289 0.97481 1.21111 0.99705 1.00799 0.93526 1.21371 0.92156 0.96546 0.99158 1.68134 1.31366 1.26180 0.99626 1.20584 0.80990 0.94644 0.95369 1.20702 1.02138 1.18580 0.92442 1.23619 0.91620 0.94591 0.99100 1.77635 1.20369 1.27831 0.89894 1.47192 1.14192 1.40762 1.10592 0.94018 0.93016 0.94459 0.87280 0.94137 0.92162 0.75745 0.81115 0.84867 0.85526 0.86097 0.85900 0.84651 0.82932 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.23 37.16 0.31 -2.50 16 2 C -0.13 -2.84 5.45 -26.73 -0.15 -2.99 16 3 C 0.27 6.00 2.20 -69.08 -0.15 5.84 16 4 H 0.05 1.21 6.47 -51.93 -0.34 0.88 16 5 C -0.54 -13.20 8.73 -34.44 -0.30 -13.50 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -22.11 11.29 55.43 0.63 -21.48 16 9 Si 0.91 19.51 29.54 -169.99 -5.02 14.49 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 N -0.68 -13.76 5.14 -54.86 -0.28 -14.04 16 14 C 0.49 9.72 6.57 -152.78 -1.00 8.72 16 15 C -0.33 -6.14 6.06 -39.30 -0.24 -6.37 16 16 C 0.28 4.90 6.76 -82.66 -0.56 4.34 16 17 C -0.05 -0.74 5.88 -104.91 -0.62 -1.36 16 18 C -0.08 -1.16 9.43 -39.23 -0.37 -1.53 16 19 C -0.13 -1.45 10.03 -39.63 -0.40 -1.84 16 20 C -0.11 -1.11 10.04 -39.51 -0.40 -1.51 16 21 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 22 C -0.07 -0.97 9.58 -39.23 -0.38 -1.35 16 23 N -0.53 -9.76 9.57 -8.92 -0.09 -9.84 16 24 C 0.31 5.91 7.92 -155.60 -1.23 4.67 16 25 C -0.31 -4.92 10.92 -39.13 -0.43 -5.35 16 26 C 0.09 1.37 11.94 -17.57 -0.21 1.16 16 27 N -0.33 -6.19 12.57 30.48 0.38 -5.81 16 28 N -0.35 -6.82 3.92 -11.61 -0.05 -6.86 16 29 H 0.04 0.78 5.39 -51.93 -0.28 0.50 16 30 H 0.05 0.89 5.86 -51.93 -0.30 0.59 16 31 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.11 2.54 5.95 -51.93 -0.31 2.23 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 35 H 0.41 8.26 8.57 -40.82 -0.35 7.91 16 36 H 0.17 3.07 2.26 -52.49 -0.12 2.95 16 37 H 0.13 1.83 5.68 -52.48 -0.30 1.53 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.78 7.55 -52.48 -0.40 1.39 16 42 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 43 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -27.13 348.77 -10.67 -37.80 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -4.89 Total: 14.21 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -6.61 Total: -13.72 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.60 Total: -58.04 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.13 -10.67 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612224190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.622 kcal (2) G-P(sol) polarization free energy of solvation -27.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds