Wall clock time and date at job start Tue Mar 31 2020 13:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47091 * 2 1 4 4 H 1.08997 * 109.47117 * 305.00327 * 3 2 1 5 5 C 1.50697 * 109.47640 * 185.00177 * 3 2 1 6 6 H 1.08004 * 120.00095 * 240.00658 * 5 3 2 7 7 C 1.37872 * 119.99757 * 59.99859 * 5 3 2 8 8 N 1.31513 * 120.00300 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47085 * 90.00300 * 9 7 5 11 11 H 1.48501 * 109.47437 * 210.00156 * 9 7 5 12 12 H 1.48499 * 109.46938 * 330.00485 * 9 7 5 13 13 N 1.46503 * 109.46885 * 65.00032 * 3 2 1 14 14 C 1.37938 * 120.00166 * 275.00224 * 13 3 2 15 15 C 1.36553 * 120.46045 * 359.97438 * 14 13 3 16 16 C 1.40604 * 119.26019 * 179.70171 * 15 14 13 17 17 C 1.48221 * 119.92448 * 180.30210 * 16 15 14 18 18 C 1.39431 * 120.13058 * 359.72538 * 17 16 15 19 19 C 1.37990 * 119.86972 * 179.72553 * 18 17 16 20 20 C 1.38341 * 120.12519 * 0.54840 * 19 18 17 21 21 C 1.38331 * 120.26461 * 359.72738 * 20 19 18 22 22 C 1.37989 * 120.13011 * 359.97438 * 21 20 19 23 23 N 1.32332 * 120.15079 * 0.27646 * 16 15 14 24 24 C 1.33895 * 120.91156 * 0.02562 * 23 16 15 25 25 C 1.38924 * 132.42949 * 179.97438 * 24 23 16 26 26 C 1.38778 * 107.62245 * 180.02562 * 25 24 23 27 27 N 1.31313 * 108.97866 * 0.02562 * 26 25 24 28 28 N 1.37122 * 120.45965 * 180.25179 * 14 13 3 29 29 H 1.09003 * 109.47003 * 299.98992 * 1 2 3 30 30 H 1.09001 * 109.47566 * 60.00079 * 1 2 3 31 31 H 1.09007 * 109.46775 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47272 * 240.00275 * 2 1 3 33 33 H 1.08997 * 109.47789 * 120.00373 * 2 1 3 34 34 H 0.97006 * 120.00207 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00059 * 95.00136 * 13 3 2 36 36 H 1.08002 * 120.37244 * 359.97438 * 15 14 13 37 37 H 1.08005 * 120.06341 * 359.97438 * 18 17 16 38 38 H 1.07998 * 119.93748 * 180.27811 * 19 18 17 39 39 H 1.08002 * 119.86450 * 179.70251 * 20 19 18 40 40 H 1.08001 * 119.93640 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.06505 * 180.02562 * 22 21 20 42 42 H 1.08004 * 126.19244 * 0.03731 * 25 24 23 43 43 H 1.07994 * 125.51098 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1431 0.8786 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8803 -1.3813 10 1 6.5539 -0.3517 -0.7601 11 1 6.3834 0.9218 -2.8167 12 1 6.5574 2.0722 -0.6890 13 7 1.6524 2.0974 1.2518 14 6 0.4065 2.6776 1.3698 15 6 -0.4728 2.6474 0.3255 16 6 -1.7385 3.2411 0.4754 17 6 -2.7069 3.2110 -0.6463 18 6 -2.3631 2.6002 -1.8516 19 6 -3.2708 2.5703 -2.8905 20 6 -4.5158 3.1548 -2.7416 21 6 -4.8605 3.7673 -1.5502 22 6 -3.9633 3.7981 -0.5022 23 7 -2.0673 3.8263 1.6158 24 6 -1.2079 3.8650 2.6419 25 6 -1.2972 4.4032 3.9195 26 6 -0.0961 4.1498 4.5670 27 7 0.6987 3.4956 3.7519 28 7 0.0359 3.2975 2.5353 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8292 -0.0602 -2.9504 35 1 2.2719 2.1231 1.9979 36 1 -0.2008 2.1689 -0.6038 37 1 -1.3896 2.1478 -1.9706 38 1 -3.0073 2.0935 -3.8230 39 1 -5.2213 3.1332 -3.5591 40 1 -5.8341 4.2216 -1.4396 41 1 -4.2337 4.2762 0.4277 42 1 -2.1475 4.9244 4.3340 43 1 0.1460 4.4440 5.5775 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001612224190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:19 Heat of formation + Delta-G solvation = 133.578344 kcal Electronic energy + Delta-G solvation = -26799.437561 eV Core-core repulsion = 23232.029941 eV Total energy + Delta-G solvation = -3567.407620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.19220 -40.34449 -39.49345 -37.92287 -35.54550 -33.87129 -32.98319 -32.38338 -31.77974 -30.58806 -29.70398 -28.63968 -25.52304 -25.09624 -24.60981 -23.15711 -22.35558 -22.06534 -21.45981 -19.90550 -18.55081 -18.36224 -17.69769 -17.29636 -17.08185 -16.84341 -16.10413 -15.85612 -15.37924 -15.32670 -15.05855 -14.85632 -14.65460 -14.33693 -14.25067 -14.05022 -13.86667 -13.57671 -13.26593 -13.05540 -12.99784 -12.86264 -12.59174 -12.31404 -12.17387 -12.09681 -12.01712 -11.84533 -11.62440 -11.15209 -10.80248 -10.72963 -10.57686 -10.02498 -9.82121 -9.32556 -8.32110 -8.26170 -6.42371 -0.59895 0.13727 0.54291 0.75034 0.93951 1.39895 1.42673 1.51005 1.78594 2.16318 2.40679 2.52192 2.84600 3.03620 3.07803 3.39557 3.80376 4.01826 4.05539 4.17849 4.26737 4.32876 4.40994 4.46527 4.51872 4.55761 4.61364 4.71215 4.73732 4.75731 4.86962 5.04345 5.07764 5.15955 5.20233 5.23539 5.37717 5.43063 5.51681 5.59627 5.62205 5.65851 5.68646 5.71846 5.97304 6.09025 6.13291 6.33214 6.62892 6.74475 6.86502 7.28028 8.77923 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.004749 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.522981 B = 5894.361129 C = 8161.444407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.283 3.717 4 H 0.033 0.967 5 C -0.559 4.559 6 H 0.057 0.943 7 C 0.034 3.966 8 N -0.900 5.900 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.477 3.523 15 C -0.337 4.337 16 C 0.279 3.721 17 C -0.077 4.077 18 C -0.098 4.098 19 C -0.129 4.129 20 C -0.095 4.095 21 C -0.129 4.129 22 C -0.082 4.082 23 N -0.538 5.538 24 C 0.280 3.720 25 C -0.300 4.300 26 C 0.103 3.897 27 N -0.365 5.365 28 N -0.362 5.362 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.030 0.970 34 H 0.270 0.730 35 H 0.404 0.596 36 H 0.169 0.831 37 H 0.122 0.878 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.154 0.846 41 H 0.131 0.869 42 H 0.180 0.820 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.178 4.585 1.329 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.181 3.819 4 H 0.050 0.950 5 C -0.597 4.597 6 H 0.075 0.925 7 C -0.169 4.169 8 N -0.537 5.537 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.307 5.307 14 C 0.253 3.747 15 C -0.369 4.369 16 C 0.125 3.875 17 C -0.078 4.078 18 C -0.117 4.117 19 C -0.146 4.146 20 C -0.114 4.114 21 C -0.146 4.146 22 C -0.101 4.101 23 N -0.257 5.257 24 C 0.052 3.948 25 C -0.331 4.331 26 C -0.077 4.077 27 N -0.189 5.189 28 N -0.140 5.140 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.239 0.761 36 H 0.186 0.814 37 H 0.140 0.860 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.149 0.851 42 H 0.198 0.802 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.613 4.291 1.218 14.325 hybrid contribution 1.704 -0.179 0.351 1.749 sum -11.908 4.112 1.570 12.696 Atomic orbital electron populations 1.22085 0.96402 1.00785 1.00437 1.21897 0.94254 0.98395 1.01860 1.18836 0.94388 0.89465 0.79197 0.94953 1.21372 0.91197 1.40135 1.06956 0.92472 1.25482 1.02633 0.93959 0.94782 1.69920 1.36774 1.37392 1.09595 0.85499 0.79814 0.78480 0.77507 1.19957 1.20337 1.19984 1.45453 1.10988 1.55359 1.18885 1.17883 0.87886 0.86240 0.82721 1.21199 0.95756 1.19126 1.00859 1.20101 0.90490 0.86337 0.90600 1.18477 0.94060 1.03342 0.91897 1.21463 1.00332 0.97550 0.92388 1.21406 0.93937 1.00255 0.99050 1.21724 0.96407 0.95121 0.98113 1.21473 1.00340 1.00035 0.92775 1.21456 0.91986 0.96637 1.00010 1.68184 1.31349 1.26348 0.99826 1.21232 0.81135 0.95810 0.96665 1.21202 1.03169 1.17400 0.91301 1.24433 0.90483 0.92454 1.00305 1.77614 1.21799 1.29271 0.90173 1.47307 1.14622 1.41321 1.10793 0.94631 0.92259 0.92979 0.89316 0.95086 0.92005 0.76103 0.81382 0.85991 0.83399 0.82464 0.82803 0.85105 0.80225 0.74740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 8.23 71.98 0.59 -4.66 16 2 C -0.12 -5.49 5.45 30.59 0.17 -5.32 16 3 C 0.28 13.11 2.20 44.24 0.10 13.21 16 4 H 0.03 1.62 6.47 -2.39 -0.02 1.61 16 5 C -0.56 -28.32 8.73 25.60 0.22 -28.10 16 6 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 7 C 0.03 1.69 5.29 84.65 0.45 2.14 16 8 N -0.90 -46.05 11.29 21.45 0.24 -45.81 16 9 Si 0.96 40.48 29.54 68.60 2.03 42.51 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 N -0.68 -29.28 5.14 -327.47 -1.68 -30.97 16 14 C 0.48 19.64 6.57 131.34 0.86 20.50 16 15 C -0.34 -12.95 6.06 22.45 0.14 -12.81 16 16 C 0.28 10.05 6.76 42.30 0.29 10.33 16 17 C -0.08 -2.32 5.88 -20.05 -0.12 -2.43 16 18 C -0.10 -2.66 9.43 22.50 0.21 -2.45 16 19 C -0.13 -2.67 10.03 22.24 0.22 -2.45 16 20 C -0.10 -1.63 10.04 22.32 0.22 -1.40 16 21 C -0.13 -2.41 10.03 22.23 0.22 -2.19 16 22 C -0.08 -2.08 9.58 22.50 0.22 -1.86 16 23 N -0.54 -19.92 9.57 -182.12 -1.74 -21.67 16 24 C 0.28 10.56 7.92 133.19 1.05 11.62 16 25 C -0.30 -9.14 10.92 22.56 0.25 -8.89 16 26 C 0.10 2.91 11.94 84.90 1.01 3.93 16 27 N -0.37 -13.48 12.57 -57.49 -0.72 -14.20 16 28 N -0.36 -14.46 3.92 -190.63 -0.75 -15.21 16 29 H 0.03 1.37 5.39 -2.39 -0.01 1.36 16 30 H 0.06 2.11 5.86 -2.39 -0.01 2.10 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.09 4.28 5.95 -2.38 -0.01 4.27 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.27 13.14 8.31 -92.70 -0.77 12.37 16 35 H 0.40 17.33 8.57 -92.71 -0.79 16.54 16 36 H 0.17 6.43 2.26 -2.91 -0.01 6.42 16 37 H 0.12 3.50 5.68 -2.91 -0.02 3.48 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.13 3.37 7.55 -2.91 -0.02 3.35 16 42 H 0.18 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.24 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -60.53 348.77 3.76 -56.78 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.28 Total: 39.42 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 6.11 Total: -10.86 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -4.65 Total: -127.85 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -60.53 3.76 -56.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612224190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.353 kcal (2) G-P(sol) polarization free energy of solvation -60.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds