Wall clock time and date at job start Tue Mar 31 2020 13:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.72241 * 2 1 4 4 C 1.53671 * 110.66244 * 236.91606 * 2 1 3 5 5 N 1.44592 * 111.15805 * 241.61241 * 4 2 1 6 6 C 1.28269 * 119.97768 * 359.88648 * 5 4 2 7 7 N 1.37567 * 125.05920 * 180.02562 * 6 5 4 8 8 C 1.47080 * 120.87835 * 179.79725 * 7 6 5 9 9 C 1.53695 * 108.27673 * 128.75441 * 8 7 6 10 10 N 1.46906 * 109.25795 * 54.07770 * 9 8 7 11 11 C 1.46890 * 110.99914 * 172.60676 * 10 9 8 12 12 C 1.53004 * 109.47642 * 308.05268 * 11 10 9 13 13 H 1.08995 * 109.47039 * 58.34124 * 12 11 10 14 14 C 1.47199 * 109.46735 * 298.34771 * 12 11 10 15 15 N 9.53414 * 123.21168 * 145.65363 * 2 1 3 16 16 C 1.53001 * 109.47444 * 178.34882 * 12 11 10 17 17 C 1.50699 * 109.47056 * 184.99507 * 16 12 11 18 18 H 1.07999 * 120.00032 * 0.02562 * 17 16 12 19 19 C 1.37879 * 119.99860 * 179.97438 * 17 16 12 20 20 N 1.31512 * 120.00048 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47066 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46886 * 120.00091 * 21 19 17 24 24 H 1.48493 * 109.47231 * 240.00399 * 21 19 17 25 25 C 1.46900 * 111.26720 * 296.75760 * 10 9 8 26 26 C 1.47081 * 120.88148 * 0.07114 * 7 6 5 27 27 S 1.76757 * 109.92484 * 0.10954 * 6 5 4 28 28 H 1.08993 * 109.47434 * 183.08045 * 1 2 3 29 29 H 1.09000 * 109.47303 * 303.08445 * 1 2 3 30 30 H 1.09008 * 109.46806 * 63.07578 * 1 2 3 31 31 H 1.08997 * 109.13145 * 2.02887 * 4 2 1 32 32 H 1.08999 * 109.13266 * 121.18874 * 4 2 1 33 33 H 1.08997 * 109.62634 * 248.52010 * 8 7 6 34 34 H 1.09000 * 109.63254 * 9.09947 * 8 7 6 35 35 H 1.08999 * 109.64823 * 294.08006 * 9 8 7 36 36 H 1.08997 * 109.42423 * 173.94374 * 9 8 7 37 37 H 1.09006 * 109.47451 * 68.04982 * 11 10 9 38 38 H 1.09004 * 109.47147 * 188.05159 * 11 10 9 39 39 H 1.09002 * 109.46679 * 305.00108 * 16 12 11 40 40 H 1.09000 * 109.46767 * 64.99903 * 16 12 11 41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 42 42 H 1.08991 * 109.49685 * 303.14156 * 25 10 9 43 43 H 1.08999 * 109.49046 * 183.05938 * 25 10 9 44 44 H 1.08997 * 109.62840 * 350.89945 * 26 7 6 45 45 H 1.08997 * 109.62601 * 111.47627 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0722 -0.7849 -1.2047 5 7 2.8563 -1.9219 -0.7768 6 6 3.0184 -2.1543 0.4742 7 7 3.7414 -3.2018 0.9962 8 6 3.8711 -3.3789 2.4505 9 6 3.4872 -4.8265 2.7959 10 7 4.2929 -5.7484 1.9841 11 6 4.0848 -7.1401 2.4053 12 6 4.2978 -7.2530 3.9162 13 1 3.6076 -6.5850 4.4314 14 6 5.6823 -6.8772 4.2459 15 7 6.7522 -6.5860 4.5004 16 6 4.0408 -8.6941 4.3613 17 6 4.1303 -8.7796 5.8632 18 1 4.3482 -7.8944 6.4424 19 6 3.9329 -9.9875 6.4980 20 7 3.6670 -11.0652 5.7927 21 14 4.0431 -10.0933 8.3597 22 1 4.3508 -8.7505 8.9144 23 1 2.7467 -10.5688 8.9060 24 1 5.1187 -11.0443 8.7387 25 6 4.0098 -5.5838 0.5520 26 6 4.4102 -4.1708 0.1147 27 16 2.1728 -0.9303 1.4288 28 1 -0.3634 -1.0261 0.0552 29 1 -0.3634 0.5610 0.8610 30 1 -0.3633 0.4654 -0.9164 31 1 1.2354 -1.1350 -1.8090 32 1 2.6973 -0.1265 -1.8080 33 1 4.9010 -3.1882 2.7521 34 1 3.2023 -2.6887 2.9646 35 1 2.4297 -4.9855 2.5849 36 1 3.6792 -5.0101 3.8530 37 1 3.0684 -7.4466 2.1579 38 1 4.7949 -7.7861 1.8890 39 1 3.0463 -9.0022 4.0383 40 1 4.7875 -9.3508 3.9149 41 1 3.5285 -11.9151 6.2393 42 1 2.9451 -5.7322 0.3723 43 1 4.5809 -6.3165 -0.0181 44 1 4.0979 -4.0043 -0.9162 45 1 5.4909 -4.0547 0.1961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127060038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:15 Heat of formation + Delta-G solvation = 59.770273 kcal Electronic energy + Delta-G solvation = -24612.357977 eV Core-core repulsion = 21177.193750 eV Total energy + Delta-G solvation = -3435.164227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.67681 -38.09374 -36.69419 -35.08567 -33.63322 -32.64407 -31.72099 -31.11939 -28.40748 -26.66559 -25.62317 -24.03653 -23.47687 -22.62068 -21.72921 -20.98833 -19.53839 -18.15873 -16.71548 -16.66957 -16.27047 -15.90381 -15.29442 -15.15110 -15.03486 -14.83929 -14.50923 -14.30997 -13.95862 -13.77906 -13.38267 -13.01042 -12.98414 -12.65532 -12.40177 -12.33863 -12.05167 -11.93491 -11.80742 -11.61334 -11.41242 -11.36879 -11.28616 -11.20417 -11.07956 -10.76707 -10.67462 -10.52956 -10.15545 -9.58647 -9.34859 -9.24496 -8.58142 -8.48509 -8.26946 -7.96837 -6.12694 -4.16022 0.96882 1.71558 2.01081 2.67758 3.26577 3.35080 3.39235 3.66883 3.75187 3.87897 4.04674 4.29933 4.38589 4.48371 4.71057 4.81490 4.86246 4.88930 5.02950 5.10775 5.12849 5.22986 5.24047 5.25716 5.32270 5.38194 5.39752 5.53736 5.54060 5.65846 5.69223 5.72082 5.76011 5.91820 5.99458 6.31480 6.41719 6.46264 6.94151 7.03382 7.12818 7.38535 7.48355 7.67687 7.82366 8.19211 8.53154 8.88795 9.49815 10.98204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.002512 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.104693 B =11144.143544 C =11563.907751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.112 0.888 4 C 0.074 3.926 5 N -0.620 5.620 6 C 0.447 3.553 7 N -0.580 5.580 8 C 0.131 3.869 9 C 0.033 3.967 10 N -0.540 5.540 11 C 0.063 3.937 12 C 0.005 3.995 13 H 0.101 0.899 14 C 0.253 3.747 15 N -0.474 5.474 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.042 3.958 26 C 0.136 3.864 27 S -0.207 6.207 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 19.867 -14.681 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.214 4.214 3 H 0.130 0.870 4 C -0.059 4.059 5 N -0.352 5.352 6 C 0.062 3.938 7 N -0.301 5.301 8 C 0.008 3.992 9 C -0.096 4.096 10 N -0.265 5.265 11 C -0.065 4.065 12 C -0.017 4.017 13 H 0.119 0.881 14 C -0.064 4.064 15 N -0.151 5.151 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.087 4.087 26 C 0.011 3.989 27 S 0.020 5.980 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.834 20.055 -13.771 24.804 hybrid contribution -1.379 -0.244 0.208 1.415 sum -6.212 19.811 -13.563 24.800 Atomic orbital electron populations 1.21899 0.91232 1.03387 1.02770 1.24676 1.00419 1.02223 0.94085 0.86951 1.22507 0.97091 0.89766 0.96559 1.69816 1.28542 1.23279 1.13545 1.23418 0.91008 0.90047 0.89372 1.46163 1.52361 1.25079 1.06480 1.21969 1.02674 0.96764 0.77796 1.22719 0.95798 0.91361 0.99725 1.62022 1.55802 1.05810 1.02854 1.22262 1.01158 0.87943 0.95113 1.19346 0.85234 1.03078 0.94003 0.88113 1.28871 0.94651 0.91321 0.91590 1.81065 1.12678 1.11116 1.10257 1.19175 0.98402 0.86270 0.96861 1.21159 1.48995 0.94823 0.91444 0.92450 1.24954 0.94878 0.95727 0.98414 1.69944 1.47990 0.99582 1.35439 0.86539 0.77706 0.78284 0.85585 1.19649 1.20854 1.20943 1.22495 0.99826 0.96954 0.89449 1.21773 0.97024 0.85972 0.94136 1.86671 1.63427 1.31197 1.16708 0.91422 0.91539 0.90944 0.89270 0.89504 0.90125 0.89689 0.93670 0.88281 0.92798 0.89718 0.94445 0.95466 0.92819 0.94143 0.89228 0.88615 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 9.08 37.16 0.34 -0.47 16 2 C -0.08 -0.63 3.99 -26.38 -0.11 -0.73 16 3 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.07 0.64 7.25 -4.71 -0.03 0.61 16 5 N -0.62 -7.30 9.89 -62.21 -0.62 -7.92 16 6 C 0.45 5.29 7.98 -89.83 -0.72 4.58 16 7 N -0.58 -6.68 3.08 -173.38 -0.53 -7.21 16 8 C 0.13 1.45 6.66 -3.36 -0.02 1.43 16 9 C 0.03 0.39 5.23 -3.46 -0.02 0.37 16 10 N -0.54 -6.84 4.34 -234.03 -1.02 -7.85 16 11 C 0.06 0.89 4.52 -3.83 -0.02 0.88 16 12 C 0.01 0.09 1.75 -93.41 -0.16 -0.07 16 13 H 0.10 1.64 6.06 -51.93 -0.31 1.32 16 14 C 0.25 5.05 13.44 -20.71 -0.28 4.77 16 15 N -0.47 -10.39 18.55 42.22 0.78 -9.61 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 17 C -0.53 -13.70 8.60 -34.44 -0.30 -14.00 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 21 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 26 C 0.14 1.45 6.66 -3.60 -0.02 1.43 16 27 S -0.21 -2.16 21.07 -107.50 -2.27 -4.43 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 31 H 0.09 0.69 7.65 -51.93 -0.40 0.29 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.89 6.55 -51.93 -0.34 0.55 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.22 5.63 -51.93 -0.29 0.93 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 44 H 0.10 1.02 7.27 -51.93 -0.38 0.64 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -30.66 374.76 -11.04 -41.70 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.17 Total: -3.29 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.58 Total: 1.40 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.65 Total: -57.04 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.27 Total: -4.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.66 -11.04 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127060038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.466 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds