Wall clock time and date at job start Tue Mar 31 2020 13:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.72241 * 2 1 4 4 C 1.53671 * 110.66244 * 236.91606 * 2 1 3 5 5 N 1.44592 * 111.15805 * 241.61241 * 4 2 1 6 6 C 1.28269 * 119.97768 * 359.88648 * 5 4 2 7 7 N 1.37567 * 125.05920 * 180.02562 * 6 5 4 8 8 C 1.47080 * 120.87835 * 179.79725 * 7 6 5 9 9 C 1.53695 * 108.27673 * 128.75441 * 8 7 6 10 10 N 1.46906 * 109.25795 * 54.07770 * 9 8 7 11 11 C 1.46890 * 110.99914 * 172.60676 * 10 9 8 12 12 C 1.53004 * 109.47642 * 308.05268 * 11 10 9 13 13 H 1.08995 * 109.47039 * 58.34124 * 12 11 10 14 14 C 1.47199 * 109.46735 * 298.34771 * 12 11 10 15 15 N 9.53414 * 123.21168 * 145.65363 * 2 1 3 16 16 C 1.53001 * 109.47444 * 178.34882 * 12 11 10 17 17 C 1.50699 * 109.47056 * 184.99507 * 16 12 11 18 18 H 1.07999 * 120.00032 * 0.02562 * 17 16 12 19 19 C 1.37879 * 119.99860 * 179.97438 * 17 16 12 20 20 N 1.31512 * 120.00048 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47066 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46886 * 120.00091 * 21 19 17 24 24 H 1.48493 * 109.47231 * 240.00399 * 21 19 17 25 25 C 1.46900 * 111.26720 * 296.75760 * 10 9 8 26 26 C 1.47081 * 120.88148 * 0.07114 * 7 6 5 27 27 S 1.76757 * 109.92484 * 0.10954 * 6 5 4 28 28 H 1.08993 * 109.47434 * 183.08045 * 1 2 3 29 29 H 1.09000 * 109.47303 * 303.08445 * 1 2 3 30 30 H 1.09008 * 109.46806 * 63.07578 * 1 2 3 31 31 H 1.08997 * 109.13145 * 2.02887 * 4 2 1 32 32 H 1.08999 * 109.13266 * 121.18874 * 4 2 1 33 33 H 1.08997 * 109.62634 * 248.52010 * 8 7 6 34 34 H 1.09000 * 109.63254 * 9.09947 * 8 7 6 35 35 H 1.08999 * 109.64823 * 294.08006 * 9 8 7 36 36 H 1.08997 * 109.42423 * 173.94374 * 9 8 7 37 37 H 1.09006 * 109.47451 * 68.04982 * 11 10 9 38 38 H 1.09004 * 109.47147 * 188.05159 * 11 10 9 39 39 H 1.09002 * 109.46679 * 305.00108 * 16 12 11 40 40 H 1.09000 * 109.46767 * 64.99903 * 16 12 11 41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 42 42 H 1.08991 * 109.49685 * 303.14156 * 25 10 9 43 43 H 1.08999 * 109.49046 * 183.05938 * 25 10 9 44 44 H 1.08997 * 109.62840 * 350.89945 * 26 7 6 45 45 H 1.08997 * 109.62601 * 111.47627 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0722 -0.7849 -1.2047 5 7 2.8563 -1.9219 -0.7768 6 6 3.0184 -2.1543 0.4742 7 7 3.7414 -3.2018 0.9962 8 6 3.8711 -3.3789 2.4505 9 6 3.4872 -4.8265 2.7959 10 7 4.2929 -5.7484 1.9841 11 6 4.0848 -7.1401 2.4053 12 6 4.2978 -7.2530 3.9162 13 1 3.6076 -6.5850 4.4314 14 6 5.6823 -6.8772 4.2459 15 7 6.7522 -6.5860 4.5004 16 6 4.0408 -8.6941 4.3613 17 6 4.1303 -8.7796 5.8632 18 1 4.3482 -7.8944 6.4424 19 6 3.9329 -9.9875 6.4980 20 7 3.6670 -11.0652 5.7927 21 14 4.0431 -10.0933 8.3597 22 1 4.3508 -8.7505 8.9144 23 1 2.7467 -10.5688 8.9060 24 1 5.1187 -11.0443 8.7387 25 6 4.0098 -5.5838 0.5520 26 6 4.4102 -4.1708 0.1147 27 16 2.1728 -0.9303 1.4288 28 1 -0.3634 -1.0261 0.0552 29 1 -0.3634 0.5610 0.8610 30 1 -0.3633 0.4654 -0.9164 31 1 1.2354 -1.1350 -1.8090 32 1 2.6973 -0.1265 -1.8080 33 1 4.9010 -3.1882 2.7521 34 1 3.2023 -2.6887 2.9646 35 1 2.4297 -4.9855 2.5849 36 1 3.6792 -5.0101 3.8530 37 1 3.0684 -7.4466 2.1579 38 1 4.7949 -7.7861 1.8890 39 1 3.0463 -9.0022 4.0383 40 1 4.7875 -9.3508 3.9149 41 1 3.5285 -11.9151 6.2393 42 1 2.9451 -5.7322 0.3723 43 1 4.5809 -6.3165 -0.0181 44 1 4.0979 -4.0043 -0.9162 45 1 5.4909 -4.0547 0.1961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127060038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:14 Heat of formation + Delta-G solvation = 41.587820 kcal Electronic energy + Delta-G solvation = -24613.146427 eV Core-core repulsion = 21177.193750 eV Total energy + Delta-G solvation = -3435.952677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62867 -39.02475 -37.91844 -36.28847 -35.37473 -33.76267 -32.91093 -32.15446 -29.56827 -27.88061 -26.70223 -25.00102 -24.45822 -23.78484 -23.21975 -21.88709 -20.37356 -19.02088 -18.48892 -18.12303 -17.25555 -16.67119 -16.57339 -16.19260 -15.97393 -15.94219 -15.84420 -15.31325 -14.86750 -14.57083 -14.52745 -14.42858 -14.18630 -13.73040 -13.62011 -13.45291 -13.32806 -13.06051 -12.99607 -12.80446 -12.69431 -12.49314 -12.46193 -12.34714 -12.31271 -12.18900 -12.12459 -11.68025 -11.45216 -11.33573 -11.08146 -10.54947 -10.15248 -9.47683 -9.16859 -8.78848 -8.19077 -6.26943 0.21987 1.00837 1.17358 1.39574 1.43101 1.52964 1.85570 2.06972 2.14284 2.41872 2.85232 3.16832 3.34347 3.41328 3.66146 3.77819 3.88774 4.01269 4.04114 4.19148 4.25650 4.27044 4.39398 4.42542 4.49636 4.60951 4.64604 4.68110 4.75242 4.80483 4.83216 4.86121 4.89480 4.93620 5.01461 5.07616 5.19691 5.47530 5.61670 5.62311 5.79315 5.93112 6.06869 6.20071 6.25010 6.84339 6.87803 6.94554 7.41800 8.92004 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.002512 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.104693 B =11144.143544 C =11563.907751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 H 0.129 0.871 4 C 0.069 3.931 5 N -0.638 5.638 6 C 0.437 3.563 7 N -0.586 5.586 8 C 0.137 3.863 9 C 0.035 3.965 10 N -0.548 5.548 11 C 0.074 3.926 12 C 0.017 3.983 13 H 0.119 0.881 14 C 0.264 3.736 15 N -0.509 5.509 16 C 0.038 3.962 17 C -0.536 4.536 18 H 0.055 0.945 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.947 3.053 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.286 1.286 25 C 0.047 3.953 26 C 0.141 3.859 27 S -0.236 6.236 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.003 0.997 41 H 0.264 0.736 42 H 0.041 0.959 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 21.355 -15.321 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.202 4.202 3 H 0.147 0.853 4 C -0.064 4.064 5 N -0.371 5.371 6 C 0.051 3.949 7 N -0.307 5.307 8 C 0.014 3.986 9 C -0.094 4.094 10 N -0.274 5.274 11 C -0.054 4.054 12 C -0.005 4.005 13 H 0.137 0.863 14 C -0.052 4.052 15 N -0.186 5.186 16 C -0.001 4.001 17 C -0.574 4.574 18 H 0.073 0.927 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.773 3.227 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.212 1.212 25 C -0.081 4.081 26 C 0.016 3.984 27 S -0.009 6.009 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.879 21.567 -14.423 26.602 hybrid contribution -1.076 -0.641 0.337 1.297 sum -6.954 20.925 -14.086 26.165 Atomic orbital electron populations 1.21888 0.89916 1.02928 1.04120 1.24807 1.01334 1.02210 0.91821 0.85307 1.22630 0.97430 0.89361 0.96989 1.69802 1.28951 1.24550 1.13756 1.23555 0.91318 0.90334 0.89701 1.46221 1.52584 1.25355 1.06543 1.21867 1.02351 0.96392 0.77947 1.22697 0.95879 0.91572 0.99217 1.61986 1.56378 1.04938 1.04054 1.22083 1.01980 0.89068 0.92289 1.19287 0.84220 1.00235 0.96755 0.86324 1.29303 0.94907 0.90436 0.90540 1.81067 1.13781 1.12204 1.11551 1.18990 0.97357 0.88833 0.94916 1.21570 1.47887 0.94578 0.93404 0.92702 1.25700 0.94995 0.95723 1.02351 1.70035 1.49311 1.00034 1.36961 0.85664 0.77808 0.78155 0.81076 1.19274 1.19913 1.21220 1.22498 1.00073 0.97326 0.88219 1.21716 0.96740 0.85789 0.94116 1.86728 1.63628 1.31584 1.18936 0.92644 0.91216 0.88595 0.88262 0.88352 0.90853 0.89103 0.93269 0.88876 0.91349 0.89796 0.94721 0.97904 0.92750 0.94036 0.88032 0.88496 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.08 71.98 0.65 -0.61 16 2 C -0.07 -0.93 3.99 30.82 0.12 -0.81 16 3 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.07 1.05 7.25 86.96 0.63 1.68 16 5 N -0.64 -14.20 9.89 -350.72 -3.47 -17.67 16 6 C 0.44 9.90 7.98 180.07 1.44 11.34 16 7 N -0.59 -12.97 3.08 -702.46 -2.16 -15.13 16 8 C 0.14 2.95 6.66 86.50 0.58 3.52 16 9 C 0.04 0.79 5.23 86.54 0.45 1.24 16 10 N -0.55 -13.15 4.34 -894.33 -3.89 -17.03 16 11 C 0.07 1.99 4.52 86.31 0.39 2.38 16 12 C 0.02 0.57 1.75 -12.60 -0.02 0.55 16 13 H 0.12 3.69 6.06 -2.39 -0.01 3.67 16 14 C 0.26 10.45 13.44 89.42 1.20 11.66 16 15 N -0.51 -22.19 18.55 20.03 0.37 -21.82 16 16 C 0.04 1.70 4.42 29.85 0.13 1.83 16 17 C -0.54 -27.83 8.60 25.60 0.22 -27.61 16 18 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 19 C 0.01 0.61 5.46 84.66 0.46 1.07 16 20 N -0.92 -52.46 13.29 21.45 0.28 -52.17 16 21 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 25 C 0.05 0.95 5.62 86.38 0.49 1.43 16 26 C 0.14 2.87 6.66 86.35 0.58 3.45 16 27 S -0.24 -4.67 21.07 -56.49 -1.19 -5.86 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.10 1.31 7.65 -2.39 -0.02 1.29 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.84 6.55 -2.39 -0.02 1.83 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 2.18 5.63 -2.39 -0.01 2.17 16 37 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 42 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.79 8.11 -2.39 -0.02 1.77 16 44 H 0.10 1.96 7.27 -2.39 -0.02 1.95 16 45 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -64.83 374.76 0.27 -64.57 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.98 Total: 9.00 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 7.32 Total: 11.12 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -8.86 Total: -123.83 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -1.19 Total: -5.86 kcal Total: -64.83 0.27 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127060038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.155 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds