Wall clock time and date at job start Tue Mar 31 2020 14:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00646 * 2 1 4 4 H 1.48509 * 109.46868 * 270.00022 * 3 2 1 5 5 H 1.48500 * 109.46891 * 29.99198 * 3 2 1 6 6 H 1.48495 * 109.47487 * 149.99753 * 3 2 1 7 7 C 1.37882 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47479 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47451 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99941 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00065 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99954 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00084 * 0.02562 * 14 12 11 16 16 C 1.50699 * 109.46928 * 270.00021 * 15 14 12 17 17 C 1.34518 * 125.79107 * 89.71537 * 16 15 14 18 18 C 1.41380 * 106.84191 * 179.89106 * 17 16 15 19 19 C 1.34514 * 106.83983 * 0.37041 * 18 17 16 20 20 O 1.34305 * 125.78908 * 270.02059 * 16 15 14 21 21 C 1.46496 * 120.00157 * 179.97438 * 14 12 11 22 22 C 1.52998 * 109.47337 * 270.00189 * 21 14 12 23 23 H 1.08997 * 109.87469 * 58.99216 * 22 21 14 24 24 C 1.54099 * 109.88024 * 179.97438 * 22 21 14 25 25 C 1.54814 * 104.19185 * 121.45025 * 24 22 21 26 26 C 1.55003 * 102.08774 * 20.88242 * 25 24 22 27 27 O 1.43749 * 109.87624 * 297.82723 * 22 21 14 28 28 H 0.96995 * 119.99483 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47214 * 59.99410 * 9 7 2 30 30 H 1.09000 * 109.47188 * 299.99609 * 9 7 2 31 31 H 1.09001 * 109.47203 * 59.99619 * 10 9 7 32 32 H 1.09000 * 109.46767 * 300.00082 * 10 9 7 33 33 H 0.97000 * 119.99725 * 0.02562 * 11 10 9 34 34 H 1.09004 * 109.47073 * 29.99849 * 15 14 12 35 35 H 1.09000 * 109.47212 * 149.99932 * 15 14 12 36 36 H 1.08000 * 126.57557 * 0.02562 * 17 16 15 37 37 H 1.08001 * 126.57774 * 180.16404 * 18 17 16 38 38 H 1.08001 * 125.78846 * 179.79835 * 19 18 17 39 39 H 1.09001 * 109.47057 * 30.00532 * 21 14 12 40 40 H 1.08999 * 109.47333 * 150.00092 * 21 14 12 41 41 H 1.09003 * 110.49112 * 240.12889 * 24 22 21 42 42 H 1.09001 * 110.48885 * 2.64784 * 24 22 21 43 43 H 1.08992 * 110.90855 * 139.07651 * 25 24 22 44 44 H 1.08990 * 110.90943 * 262.65165 * 25 24 22 45 45 H 1.08995 * 110.61814 * 81.47611 * 26 25 24 46 46 H 1.08993 * 110.61688 * 204.47534 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5125 -4.9309 0.0012 12 6 2.1864 -6.0981 0.0018 13 8 3.4022 -6.0982 0.0023 14 7 1.5125 -7.2652 0.0018 15 6 0.0474 -7.2652 0.0006 16 6 -0.4560 -7.2645 1.4210 17 6 -0.7137 -6.1729 2.1638 18 6 -1.1650 -6.6313 3.4227 19 6 -1.1483 -7.9756 3.3769 20 8 -0.7181 -8.3535 2.1620 21 6 2.2449 -8.5340 0.0019 22 6 2.5000 -8.9758 -1.4405 23 1 3.0738 -8.2124 -1.9659 24 6 3.2709 -10.3100 -1.4513 25 6 2.3494 -11.2745 -2.2369 26 6 1.4546 -10.2913 -3.0340 27 8 1.2486 -9.1993 -2.1117 28 1 -0.4849 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.8718 -3.6045 0.8905 32 1 2.8717 -3.6044 -0.8895 33 1 0.5425 -4.9308 0.0011 34 1 -0.3155 -6.3754 -0.5140 35 1 -0.3155 -8.1554 -0.5131 36 1 -0.5999 -5.1438 1.8565 37 1 -1.4626 -6.0196 4.2616 38 1 -1.4330 -8.6386 4.1805 39 1 3.1972 -8.4037 0.5159 40 1 1.6557 -9.2936 0.5158 41 1 4.2266 -10.1944 -1.9626 42 1 3.4246 -10.6701 -0.4340 43 1 2.9299 -11.9052 -2.9101 44 1 1.7516 -11.8814 -1.5570 45 1 1.9690 -9.9446 -3.9302 46 1 0.5050 -10.7599 -3.2923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273309118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:42 Heat of formation + Delta-G solvation = -60.732394 kcal Electronic energy + Delta-G solvation = -27799.170463 eV Core-core repulsion = 23883.735226 eV Total energy + Delta-G solvation = -3915.435237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.52326 -40.17075 -39.17526 -35.71577 -34.89471 -33.04572 -32.77154 -32.36788 -31.31362 -29.97874 -29.09152 -26.25856 -25.56030 -24.13169 -22.40459 -21.73837 -21.23776 -20.89527 -20.78286 -19.51032 -18.08662 -17.28134 -16.87603 -16.39079 -16.10772 -15.96199 -15.53825 -15.41778 -15.06398 -14.50888 -14.40543 -13.92799 -13.82270 -13.50591 -13.48561 -12.95788 -12.75642 -12.68917 -12.63031 -12.27213 -12.14468 -11.96329 -11.79447 -11.56022 -11.28844 -11.12142 -11.01187 -10.94364 -10.61198 -10.29694 -9.94897 -9.87358 -9.84840 -9.52481 -9.24072 -8.81392 -8.50017 -8.43134 -8.19227 -6.06857 -4.09224 1.66228 2.60074 2.94383 3.06385 3.31348 3.37470 3.42049 3.56524 3.73211 4.27788 4.34852 4.46788 4.54635 4.66720 4.72619 4.87750 4.94257 5.05570 5.09548 5.13382 5.25529 5.30353 5.35876 5.43178 5.51029 5.53064 5.61515 5.72044 5.77362 5.86635 5.91566 5.99867 6.09697 6.27810 6.42970 6.51811 6.56292 6.75249 6.80000 7.01982 7.10700 7.21253 7.57865 7.65679 7.92211 8.26033 8.37807 8.93966 8.99465 9.55334 11.04800 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.003320 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.182459 B = 8432.861621 C =10071.901481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.736 5.736 12 C 0.703 3.297 13 O -0.593 6.593 14 N -0.622 5.622 15 C 0.195 3.805 16 C -0.039 4.039 17 C -0.189 4.189 18 C -0.209 4.209 19 C -0.046 4.046 20 O -0.174 6.174 21 C 0.139 3.861 22 C 0.060 3.940 23 H 0.075 0.925 24 C -0.149 4.149 25 C -0.154 4.154 26 C 0.045 3.955 27 O -0.369 6.369 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.391 0.609 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.200 0.800 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -24.158 -0.027 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.391 5.391 12 C 0.405 3.595 13 O -0.472 6.472 14 N -0.358 5.358 15 C 0.071 3.929 16 C -0.091 4.091 17 C -0.209 4.209 18 C -0.229 4.229 19 C -0.114 4.114 20 O -0.070 6.070 21 C 0.015 3.985 22 C 0.001 3.999 23 H 0.093 0.907 24 C -0.187 4.187 25 C -0.192 4.192 26 C -0.031 4.031 27 O -0.289 6.289 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.226 0.774 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.217 0.783 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.364 -24.156 -0.100 24.194 hybrid contribution -0.010 1.060 0.234 1.085 sum -1.374 -23.096 0.134 23.137 Atomic orbital electron populations 1.69955 1.06059 1.26813 1.50461 1.24988 0.94887 0.99357 0.95040 0.86521 0.79855 0.83054 0.78177 1.20581 1.21211 1.19734 1.21044 0.93253 0.90332 1.51205 0.92240 1.19320 0.94248 0.91094 0.97748 1.21609 0.95684 0.80420 1.00681 1.45706 1.09844 1.05370 1.78164 1.16008 0.85394 0.80406 0.77697 1.90873 1.11525 1.86230 1.58568 1.47090 1.04908 1.05126 1.78685 1.19819 0.80413 1.05539 0.87120 1.23085 1.05466 0.84389 0.96130 1.21818 1.04832 0.99898 0.94345 1.21874 1.06792 0.94783 0.99410 1.23991 1.04380 0.96098 0.86923 1.83991 1.65260 1.35062 1.22719 1.21519 0.98242 0.84235 0.94475 1.23288 0.85394 0.96718 0.94484 0.90661 1.22926 0.99343 0.94591 1.01859 1.23119 0.98321 0.98306 0.99459 1.23535 0.99955 0.86895 0.92750 1.88893 1.31744 1.52996 1.55237 0.92887 0.95996 0.96019 0.92754 0.92726 0.77401 0.87676 0.87626 0.83066 0.83452 0.78343 0.88578 0.90202 0.90423 0.90217 0.90384 0.90529 0.92329 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 11 N -0.74 -13.64 5.42 -65.23 -0.35 -13.99 16 12 C 0.70 12.94 8.28 -86.92 -0.72 12.22 16 13 O -0.59 -12.86 15.92 5.29 0.08 -12.78 16 14 N -0.62 -9.00 2.40 -180.80 -0.43 -9.44 16 15 C 0.20 2.43 5.49 -5.19 -0.03 2.40 16 16 C -0.04 -0.52 6.90 -35.62 -0.25 -0.77 16 17 C -0.19 -2.66 10.54 -39.70 -0.42 -3.08 16 18 C -0.21 -2.60 10.91 -39.70 -0.43 -3.03 16 19 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 20 O -0.17 -2.21 10.65 5.70 0.06 -2.15 16 21 C 0.14 1.72 4.90 -4.04 -0.02 1.70 16 22 C 0.06 0.69 3.69 -26.16 -0.10 0.59 16 23 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.15 -1.24 6.64 -25.20 -0.17 -1.40 16 25 C -0.15 -1.07 7.16 -24.72 -0.18 -1.25 16 26 C 0.05 0.38 7.72 38.22 0.29 0.67 16 27 O -0.37 -4.26 9.93 -35.23 -0.35 -4.61 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.39 6.48 5.20 -40.82 -0.21 6.26 16 34 H 0.11 1.26 6.36 -51.93 -0.33 0.92 16 35 H 0.11 1.19 7.10 -51.93 -0.37 0.82 16 36 H 0.15 2.24 7.35 -52.49 -0.39 1.85 16 37 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 38 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.10 1.28 7.42 -51.93 -0.39 0.89 16 40 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -33.42 380.83 -8.88 -42.30 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.12 Total: 5.98 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.23 Total: -2.12 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.05 Total: -48.85 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.20 Total: -19.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.42 -8.88 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273309118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.430 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds