Wall clock time and date at job start Tue Mar 31 2020 14:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00646 * 2 1 4 4 H 1.48509 * 109.46868 * 270.00022 * 3 2 1 5 5 H 1.48500 * 109.46891 * 29.99198 * 3 2 1 6 6 H 1.48495 * 109.47487 * 149.99753 * 3 2 1 7 7 C 1.37882 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47479 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47451 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99941 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00065 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99954 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00084 * 0.02562 * 14 12 11 16 16 C 1.50699 * 109.46928 * 270.00021 * 15 14 12 17 17 C 1.34518 * 125.79107 * 89.71537 * 16 15 14 18 18 C 1.41380 * 106.84191 * 179.89106 * 17 16 15 19 19 C 1.34514 * 106.83983 * 0.37041 * 18 17 16 20 20 O 1.34305 * 125.78908 * 270.02059 * 16 15 14 21 21 C 1.46496 * 120.00157 * 179.97438 * 14 12 11 22 22 C 1.52998 * 109.47337 * 270.00189 * 21 14 12 23 23 H 1.08997 * 109.87469 * 58.99216 * 22 21 14 24 24 C 1.54099 * 109.88024 * 179.97438 * 22 21 14 25 25 C 1.54814 * 104.19185 * 121.45025 * 24 22 21 26 26 C 1.55003 * 102.08774 * 20.88242 * 25 24 22 27 27 O 1.43749 * 109.87624 * 297.82723 * 22 21 14 28 28 H 0.96995 * 119.99483 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47214 * 59.99410 * 9 7 2 30 30 H 1.09000 * 109.47188 * 299.99609 * 9 7 2 31 31 H 1.09001 * 109.47203 * 59.99619 * 10 9 7 32 32 H 1.09000 * 109.46767 * 300.00082 * 10 9 7 33 33 H 0.97000 * 119.99725 * 0.02562 * 11 10 9 34 34 H 1.09004 * 109.47073 * 29.99849 * 15 14 12 35 35 H 1.09000 * 109.47212 * 149.99932 * 15 14 12 36 36 H 1.08000 * 126.57557 * 0.02562 * 17 16 15 37 37 H 1.08001 * 126.57774 * 180.16404 * 18 17 16 38 38 H 1.08001 * 125.78846 * 179.79835 * 19 18 17 39 39 H 1.09001 * 109.47057 * 30.00532 * 21 14 12 40 40 H 1.08999 * 109.47333 * 150.00092 * 21 14 12 41 41 H 1.09003 * 110.49112 * 240.12889 * 24 22 21 42 42 H 1.09001 * 110.48885 * 2.64784 * 24 22 21 43 43 H 1.08992 * 110.90855 * 139.07651 * 25 24 22 44 44 H 1.08990 * 110.90943 * 262.65165 * 25 24 22 45 45 H 1.08995 * 110.61814 * 81.47611 * 26 25 24 46 46 H 1.08993 * 110.61688 * 204.47534 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5125 -4.9309 0.0012 12 6 2.1864 -6.0981 0.0018 13 8 3.4022 -6.0982 0.0023 14 7 1.5125 -7.2652 0.0018 15 6 0.0474 -7.2652 0.0006 16 6 -0.4560 -7.2645 1.4210 17 6 -0.7137 -6.1729 2.1638 18 6 -1.1650 -6.6313 3.4227 19 6 -1.1483 -7.9756 3.3769 20 8 -0.7181 -8.3535 2.1620 21 6 2.2449 -8.5340 0.0019 22 6 2.5000 -8.9758 -1.4405 23 1 3.0738 -8.2124 -1.9659 24 6 3.2709 -10.3100 -1.4513 25 6 2.3494 -11.2745 -2.2369 26 6 1.4546 -10.2913 -3.0340 27 8 1.2486 -9.1993 -2.1117 28 1 -0.4849 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8903 31 1 2.8718 -3.6045 0.8905 32 1 2.8717 -3.6044 -0.8895 33 1 0.5425 -4.9308 0.0011 34 1 -0.3155 -6.3754 -0.5140 35 1 -0.3155 -8.1554 -0.5131 36 1 -0.5999 -5.1438 1.8565 37 1 -1.4626 -6.0196 4.2616 38 1 -1.4330 -8.6386 4.1805 39 1 3.1972 -8.4037 0.5159 40 1 1.6557 -9.2936 0.5158 41 1 4.2266 -10.1944 -1.9626 42 1 3.4246 -10.6701 -0.4340 43 1 2.9299 -11.9052 -2.9101 44 1 1.7516 -11.8814 -1.5570 45 1 1.9690 -9.9446 -3.9302 46 1 0.5050 -10.7599 -3.2923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273309118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:41 Heat of formation + Delta-G solvation = -81.492017 kcal Electronic energy + Delta-G solvation = -27800.070668 eV Core-core repulsion = 23883.735226 eV Total energy + Delta-G solvation = -3916.335442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.50369 -41.42011 -40.15833 -37.04932 -36.59794 -34.86491 -33.93145 -33.16316 -32.30917 -31.52316 -30.37470 -27.22686 -27.10571 -25.64684 -23.33394 -22.82683 -22.61864 -21.98098 -21.85535 -20.83769 -19.37572 -18.49183 -18.28961 -17.84657 -17.08493 -16.95606 -16.73484 -16.52536 -16.32105 -16.25828 -15.64582 -15.23679 -15.03814 -14.87532 -14.47767 -14.28073 -14.19679 -13.78951 -13.70701 -13.55000 -13.21488 -13.09358 -12.93927 -12.79708 -12.54894 -12.52652 -12.41214 -12.23319 -11.96849 -11.67846 -11.58994 -11.48367 -11.19871 -10.87633 -10.76210 -10.60145 -10.21601 -9.68200 -9.43970 -8.23456 -6.33760 0.66416 1.41782 1.42563 1.53132 1.56169 1.81598 1.93002 2.19096 2.41157 2.92719 3.00489 3.11265 3.65071 3.72675 3.80080 3.96992 4.00745 4.10106 4.11264 4.18687 4.29869 4.39495 4.47056 4.50353 4.53075 4.63327 4.69787 4.84790 4.86268 4.92357 4.92708 4.97127 4.99204 5.09550 5.17042 5.22398 5.28022 5.40273 5.49458 5.55072 5.58188 5.74633 5.82652 6.01368 6.16697 6.18158 6.78607 6.88495 7.35273 7.48482 8.88494 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.003320 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.182459 B = 8432.861621 C =10071.901481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.160 3.840 11 N -0.732 5.732 12 C 0.702 3.298 13 O -0.629 6.629 14 N -0.613 5.613 15 C 0.197 3.803 16 C -0.046 4.046 17 C -0.211 4.211 18 C -0.234 4.234 19 C -0.027 4.027 20 O -0.178 6.178 21 C 0.137 3.863 22 C 0.064 3.936 23 H 0.043 0.957 24 C -0.146 4.146 25 C -0.145 4.145 26 C 0.036 3.964 27 O -0.388 6.388 28 H 0.266 0.734 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.401 0.599 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.160 0.840 38 H 0.244 0.756 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -25.981 0.356 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.403 3.597 13 O -0.511 6.511 14 N -0.348 5.348 15 C 0.074 3.926 16 C -0.097 4.097 17 C -0.232 4.232 18 C -0.253 4.253 19 C -0.094 4.094 20 O -0.073 6.073 21 C 0.014 3.986 22 C 0.005 3.995 23 H 0.061 0.939 24 C -0.184 4.184 25 C -0.182 4.182 26 C -0.040 4.040 27 O -0.308 6.308 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.237 0.763 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.177 0.823 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.622 -26.028 0.274 26.080 hybrid contribution -0.013 1.555 0.135 1.561 sum -1.636 -24.473 0.409 24.531 Atomic orbital electron populations 1.70061 1.07514 1.27968 1.50951 1.25862 0.95797 1.03037 0.94393 0.85446 0.78627 0.78447 0.78533 1.19731 1.20498 1.19082 1.21438 0.93575 0.91795 1.51582 0.92289 1.19107 0.94164 0.91666 0.96217 1.21106 0.94669 0.80998 0.99645 1.45431 1.10177 1.04667 1.78519 1.16106 0.85004 0.81120 0.77424 1.90841 1.13159 1.86893 1.60189 1.47111 1.05872 1.04519 1.77287 1.19920 0.78933 1.06471 0.87270 1.22984 1.06003 0.84417 0.96296 1.21894 1.05946 0.99508 0.95808 1.22128 1.07963 0.95976 0.99254 1.24806 1.01701 0.96210 0.86699 1.83999 1.65271 1.34686 1.23383 1.21700 0.97854 0.83469 0.95552 1.23116 0.85641 0.97619 0.93158 0.93886 1.22928 0.99342 0.93122 1.03028 1.23104 0.97864 0.97786 0.99451 1.23766 1.01310 0.86517 0.92378 1.88860 1.31644 1.54366 1.55900 0.92552 0.97418 0.97440 0.93853 0.93639 0.76263 0.87627 0.85817 0.84752 0.82274 0.74006 0.89736 0.88047 0.90113 0.89005 0.88545 0.89535 0.92479 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.35 5.09 29.85 0.15 1.50 16 10 C 0.16 7.28 5.61 86.38 0.48 7.76 16 11 N -0.73 -28.14 5.42 -478.55 -2.59 -30.74 16 12 C 0.70 26.54 8.28 179.06 1.48 28.02 16 13 O -0.63 -28.16 15.92 -3.98 -0.06 -28.23 16 14 N -0.61 -17.81 2.40 -844.21 -2.03 -19.84 16 15 C 0.20 4.83 5.49 85.63 0.47 5.30 16 16 C -0.05 -1.18 6.90 24.83 0.17 -1.01 16 17 C -0.21 -6.00 10.54 22.19 0.23 -5.77 16 18 C -0.23 -5.57 10.91 22.19 0.24 -5.33 16 19 C -0.03 -0.51 12.09 66.97 0.81 0.30 16 20 O -0.18 -4.13 10.65 -2.52 -0.03 -4.16 16 21 C 0.14 3.32 4.90 86.38 0.42 3.75 16 22 C 0.06 1.43 3.69 30.97 0.11 1.54 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 C -0.15 -2.19 6.64 31.59 0.21 -1.98 16 25 C -0.14 -1.62 7.16 31.90 0.23 -1.40 16 26 C 0.04 0.54 7.72 72.67 0.56 1.10 16 27 O -0.39 -8.54 9.93 -148.98 -1.48 -10.02 16 28 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.40 13.83 5.20 -92.71 -0.48 13.35 16 34 H 0.11 2.55 6.36 -2.38 -0.02 2.54 16 35 H 0.12 2.61 7.10 -2.39 -0.02 2.59 16 36 H 0.13 4.21 7.35 -2.91 -0.02 4.19 16 37 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.24 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.08 2.26 7.42 -2.39 -0.02 2.24 16 40 H 0.10 2.02 8.07 -2.39 -0.02 2.01 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.16 7.70 -2.39 -0.02 1.14 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -72.82 380.83 2.89 -69.93 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.50 Total: 27.45 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.28 Total: 3.91 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -4.34 Total: -105.08 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.57 Total: -42.41 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.82 2.89 -69.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273309118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.563 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds