Wall clock time and date at job start Tue Mar 31 2020 14:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00267 * 2 1 4 4 H 1.48498 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46921 * 299.99854 * 3 2 1 6 6 H 1.48503 * 109.46765 * 59.99679 * 3 2 1 7 7 C 1.37882 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46630 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46663 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99899 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00008 * 354.92868 * 13 12 11 15 15 N 1.34775 * 120.00095 * 174.92272 * 13 12 11 16 16 C 1.46928 * 120.63092 * 5.03533 * 15 13 12 17 17 C 1.53186 * 108.77608 * 233.58382 * 16 15 13 18 18 C 1.53041 * 109.31577 * 305.36414 * 17 16 15 19 19 C 1.53046 * 109.53639 * 61.36263 * 18 17 16 20 20 H 1.09003 * 109.49375 * 58.62009 * 19 18 17 21 21 C 1.52999 * 109.49373 * 178.68632 * 19 18 17 22 22 C 1.53000 * 109.46634 * 185.00137 * 21 19 18 23 23 F 1.39901 * 109.47298 * 60.00071 * 22 21 19 24 24 F 1.39900 * 109.47243 * 180.02562 * 22 21 19 25 25 F 1.39905 * 109.47112 * 300.00012 * 22 21 19 26 26 C 1.46923 * 120.63180 * 184.75132 * 15 13 12 27 27 H 0.96993 * 119.99670 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46760 * 299.99030 * 9 7 2 29 29 H 1.08993 * 109.47215 * 59.99409 * 9 7 2 30 30 H 1.08992 * 109.47472 * 299.99686 * 10 9 7 31 31 H 1.08998 * 109.47111 * 60.00296 * 10 9 7 32 32 H 1.09001 * 109.47152 * 300.00272 * 11 10 9 33 33 H 1.08998 * 109.46703 * 60.00552 * 11 10 9 34 34 H 0.97000 * 119.99624 * 359.97438 * 12 11 10 35 35 H 1.09005 * 109.58194 * 353.37282 * 16 15 13 36 36 H 1.09000 * 109.58762 * 113.65159 * 16 15 13 37 37 H 1.09002 * 109.49997 * 65.31589 * 17 16 15 38 38 H 1.09001 * 109.49830 * 185.37557 * 17 16 15 39 39 H 1.08995 * 109.46181 * 181.38832 * 18 17 16 40 40 H 1.09003 * 109.45542 * 301.34492 * 18 17 16 41 41 H 1.08992 * 109.47023 * 304.99677 * 21 19 18 42 42 H 1.08997 * 109.46910 * 65.00374 * 21 19 18 43 43 H 1.09003 * 109.59037 * 246.20294 * 26 15 13 44 44 H 1.08996 * 109.58648 * 6.63297 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0019 14 8 0.7913 -7.5949 0.0946 15 7 2.8544 -8.3943 -0.1008 16 6 4.3027 -8.1466 -0.1029 17 6 4.9143 -8.8082 -1.3418 18 6 4.5300 -10.2893 -1.3664 19 6 3.0076 -10.4218 -1.4500 20 1 2.6473 -9.9180 -2.3470 21 6 2.6263 -11.9024 -1.5076 22 6 1.1162 -12.0322 -1.7164 23 9 0.7563 -11.4109 -2.9171 24 9 0.7673 -13.3860 -1.7685 25 9 0.4440 -11.4185 -0.6540 26 6 2.3745 -9.7789 -0.2066 27 1 -0.4849 0.8400 -0.0004 28 1 0.6241 -2.5567 0.8904 29 1 0.6246 -2.5571 -0.8896 30 1 2.8718 -3.6044 -0.8894 31 1 2.8719 -3.6044 0.8905 32 1 0.8538 -5.0446 0.8914 33 1 0.8533 -5.0451 -0.8886 34 1 3.3858 -5.9234 0.0014 35 1 4.4896 -7.0730 -0.1320 36 1 4.7472 -8.5706 0.7975 37 1 4.5360 -8.3192 -2.2395 38 1 5.9996 -8.7139 -1.3061 39 1 4.9844 -10.7680 -2.2338 40 1 4.8872 -10.7723 -0.4568 41 1 3.1500 -12.3804 -2.3353 42 1 2.9067 -12.3864 -0.5721 43 1 2.6654 -10.3356 0.6842 44 1 1.2889 -9.7829 -0.3043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420798410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:27 Heat of formation + Delta-G solvation = -203.062888 kcal Electronic energy + Delta-G solvation = -27769.287932 eV Core-core repulsion = 23305.824042 eV Total energy + Delta-G solvation = -4463.463891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.41196 -47.92400 -47.84940 -40.45005 -38.11679 -35.39631 -34.57785 -33.20260 -32.31773 -31.11121 -29.04069 -26.89659 -25.33016 -24.35363 -22.91817 -22.44504 -20.99266 -20.59993 -19.46911 -18.83588 -18.67006 -18.00444 -17.64321 -16.54073 -16.10793 -15.69559 -15.28080 -14.87783 -14.83654 -14.63394 -14.50107 -14.43025 -14.28910 -14.15271 -14.04219 -13.98036 -13.58062 -13.48674 -13.25396 -13.10073 -12.41511 -12.33548 -12.17607 -11.80207 -11.70132 -11.58061 -11.32427 -11.20574 -10.91588 -10.76300 -10.67831 -10.55899 -10.01368 -9.85261 -9.43238 -9.10168 -8.94715 -8.48737 -8.36741 -6.01100 -4.04121 2.44741 2.64307 3.30179 3.32393 3.37608 3.40948 3.46741 3.61490 3.69859 3.98123 4.28419 4.31805 4.42071 4.45054 4.56843 4.72121 4.81444 4.95369 5.05444 5.10463 5.20962 5.34715 5.38329 5.47352 5.51691 5.62308 5.68711 5.77620 5.83262 5.90312 6.20250 6.36243 6.55733 6.63895 6.80737 7.02924 7.03835 7.65236 7.78049 7.98073 8.07844 8.38865 8.74543 9.02855 9.59983 11.10279 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.002234 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.506409 B =12529.938653 C =13226.219394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.119 4.119 11 C 0.134 3.866 12 N -0.742 5.742 13 C 0.704 3.296 14 O -0.587 6.587 15 N -0.633 5.633 16 C 0.109 3.891 17 C -0.135 4.135 18 C -0.108 4.108 19 C -0.110 4.110 20 H 0.090 0.910 21 C -0.158 4.158 22 C 0.448 3.552 23 F -0.182 7.182 24 F -0.187 7.187 25 F -0.174 7.174 26 C 0.116 3.884 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.392 0.608 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.749 -28.010 -3.165 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.398 5.398 13 C 0.405 3.595 14 O -0.465 6.465 15 N -0.371 5.371 16 C -0.015 4.015 17 C -0.174 4.174 18 C -0.146 4.146 19 C -0.130 4.130 20 H 0.109 0.891 21 C -0.197 4.197 22 C 0.394 3.606 23 F -0.163 7.163 24 F -0.169 7.169 25 F -0.155 7.155 26 C -0.008 4.008 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.647 -28.007 -3.104 30.123 hybrid contribution 0.717 0.993 -0.072 1.227 sum 11.365 -27.014 -3.176 29.479 Atomic orbital electron populations 1.69976 1.06055 1.26567 1.50648 1.25038 0.94857 0.99310 0.95324 0.86528 0.80017 0.83792 0.77597 1.19785 1.21008 1.21008 1.21240 0.92998 0.90934 1.50780 0.92620 1.19033 0.93861 0.90797 0.97719 1.21883 0.99780 0.93363 1.00735 1.21527 0.91344 0.84169 1.01921 1.45564 1.10458 1.04446 1.79349 1.15919 0.84890 0.80787 0.77906 1.90922 1.14272 1.83700 1.57611 1.47224 1.05392 1.05890 1.78624 1.21643 0.80690 1.00920 0.98229 1.21917 1.00962 0.95614 0.98863 1.21492 0.93446 0.96967 1.02675 1.21711 0.97666 0.92521 1.01066 0.89139 1.22915 0.88888 1.00534 1.07386 1.20671 0.92310 0.73404 0.74168 1.93204 1.93533 1.82733 1.46845 1.93188 1.93864 1.33628 1.96201 1.93162 1.83284 1.82317 1.56784 1.22070 1.02308 0.80583 0.95793 0.92978 0.96210 0.96238 0.92837 0.92814 0.91857 0.92021 0.77171 0.90113 0.91291 0.91040 0.90251 0.91172 0.91228 0.86857 0.86963 0.91622 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.44 5.68 -4.04 -0.02 2.41 16 12 N -0.74 -11.19 5.47 -65.22 -0.36 -11.55 16 13 C 0.70 11.28 8.30 -86.92 -0.72 10.56 16 14 O -0.59 -11.96 15.78 5.28 0.08 -11.88 16 15 N -0.63 -7.32 2.97 -178.23 -0.53 -7.84 16 16 C 0.11 0.85 6.43 -3.71 -0.02 0.82 16 17 C -0.14 -0.80 6.08 -26.61 -0.16 -0.96 16 18 C -0.11 -0.53 5.16 -26.69 -0.14 -0.67 16 19 C -0.11 -0.77 2.29 -90.27 -0.21 -0.97 16 20 H 0.09 0.78 7.66 -51.93 -0.40 0.38 16 21 C -0.16 -0.81 4.84 -26.73 -0.13 -0.94 16 22 C 0.45 3.79 3.15 37.16 0.12 3.90 16 23 F -0.18 -1.86 16.71 2.25 0.04 -1.82 16 24 F -0.19 -1.63 17.32 2.25 0.04 -1.59 16 25 F -0.17 -1.86 13.92 2.25 0.03 -1.83 16 26 C 0.12 1.16 4.97 -3.49 -0.02 1.15 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 4.77 5.93 -40.82 -0.24 4.53 16 35 H 0.08 0.61 5.57 -51.93 -0.29 0.32 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.11 1.48 4.48 -51.93 -0.23 1.25 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -34.19 361.70 -8.14 -42.33 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.62 Total: -1.42 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.99 Total: -0.12 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.15 Total: -45.61 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.19 -8.14 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420798410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.729 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds