Wall clock time and date at job start Tue Mar 31 2020 14:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00267 * 2 1 4 4 H 1.48498 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46921 * 299.99854 * 3 2 1 6 6 H 1.48503 * 109.46765 * 59.99679 * 3 2 1 7 7 C 1.37882 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46630 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46663 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46877 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99899 * 180.02562 * 12 11 10 14 14 O 1.21592 * 120.00008 * 354.92868 * 13 12 11 15 15 N 1.34775 * 120.00095 * 174.92272 * 13 12 11 16 16 C 1.46928 * 120.63092 * 5.03533 * 15 13 12 17 17 C 1.53186 * 108.77608 * 233.58382 * 16 15 13 18 18 C 1.53041 * 109.31577 * 305.36414 * 17 16 15 19 19 C 1.53046 * 109.53639 * 61.36263 * 18 17 16 20 20 H 1.09003 * 109.49375 * 58.62009 * 19 18 17 21 21 C 1.52999 * 109.49373 * 178.68632 * 19 18 17 22 22 C 1.53000 * 109.46634 * 185.00137 * 21 19 18 23 23 F 1.39901 * 109.47298 * 60.00071 * 22 21 19 24 24 F 1.39900 * 109.47243 * 180.02562 * 22 21 19 25 25 F 1.39905 * 109.47112 * 300.00012 * 22 21 19 26 26 C 1.46923 * 120.63180 * 184.75132 * 15 13 12 27 27 H 0.96993 * 119.99670 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46760 * 299.99030 * 9 7 2 29 29 H 1.08993 * 109.47215 * 59.99409 * 9 7 2 30 30 H 1.08992 * 109.47472 * 299.99686 * 10 9 7 31 31 H 1.08998 * 109.47111 * 60.00296 * 10 9 7 32 32 H 1.09001 * 109.47152 * 300.00272 * 11 10 9 33 33 H 1.08998 * 109.46703 * 60.00552 * 11 10 9 34 34 H 0.97000 * 119.99624 * 359.97438 * 12 11 10 35 35 H 1.09005 * 109.58194 * 353.37282 * 16 15 13 36 36 H 1.09000 * 109.58762 * 113.65159 * 16 15 13 37 37 H 1.09002 * 109.49997 * 65.31589 * 17 16 15 38 38 H 1.09001 * 109.49830 * 185.37557 * 17 16 15 39 39 H 1.08995 * 109.46181 * 181.38832 * 18 17 16 40 40 H 1.09003 * 109.45542 * 301.34492 * 18 17 16 41 41 H 1.08992 * 109.47023 * 304.99677 * 21 19 18 42 42 H 1.08997 * 109.46910 * 65.00374 * 21 19 18 43 43 H 1.09003 * 109.59037 * 246.20294 * 26 15 13 44 44 H 1.08996 * 109.58648 * 6.63297 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0019 14 8 0.7913 -7.5949 0.0946 15 7 2.8544 -8.3943 -0.1008 16 6 4.3027 -8.1466 -0.1029 17 6 4.9143 -8.8082 -1.3418 18 6 4.5300 -10.2893 -1.3664 19 6 3.0076 -10.4218 -1.4500 20 1 2.6473 -9.9180 -2.3470 21 6 2.6263 -11.9024 -1.5076 22 6 1.1162 -12.0322 -1.7164 23 9 0.7563 -11.4109 -2.9171 24 9 0.7673 -13.3860 -1.7685 25 9 0.4440 -11.4185 -0.6540 26 6 2.3745 -9.7789 -0.2066 27 1 -0.4849 0.8400 -0.0004 28 1 0.6241 -2.5567 0.8904 29 1 0.6246 -2.5571 -0.8896 30 1 2.8718 -3.6044 -0.8894 31 1 2.8719 -3.6044 0.8905 32 1 0.8538 -5.0446 0.8914 33 1 0.8533 -5.0451 -0.8886 34 1 3.3858 -5.9234 0.0014 35 1 4.4896 -7.0730 -0.1320 36 1 4.7472 -8.5706 0.7975 37 1 4.5360 -8.3192 -2.2395 38 1 5.9996 -8.7139 -1.3061 39 1 4.9844 -10.7680 -2.2338 40 1 4.8872 -10.7723 -0.4568 41 1 3.1500 -12.3804 -2.3353 42 1 2.9067 -12.3864 -0.5721 43 1 2.6654 -10.3356 0.6842 44 1 1.2889 -9.7829 -0.3043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420798410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:27 Heat of formation + Delta-G solvation = -224.577470 kcal Electronic energy + Delta-G solvation = -27770.220875 eV Core-core repulsion = 23305.824042 eV Total energy + Delta-G solvation = -4464.396833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.12063 -48.64780 -48.57958 -41.49036 -39.00102 -36.97427 -35.53561 -34.94638 -33.02809 -32.80534 -29.78049 -28.53903 -26.38546 -25.09854 -24.54887 -23.06011 -22.31389 -21.75206 -20.50331 -19.54008 -19.40649 -19.04319 -18.47965 -18.26859 -17.38467 -16.89253 -16.50000 -16.00202 -15.78527 -15.74930 -15.52071 -15.36269 -15.22082 -15.02571 -14.83250 -14.73079 -14.49968 -14.25188 -14.16903 -14.09830 -13.75109 -13.62848 -13.44607 -12.92425 -12.88076 -12.77492 -12.53527 -12.34161 -12.13480 -11.84527 -11.76457 -11.68487 -11.54950 -11.35877 -11.25343 -11.08444 -10.56221 -10.24661 -9.48804 -8.19294 -6.30941 1.41990 1.42429 1.55445 1.60086 1.85940 2.09214 2.42092 2.88742 2.90652 3.07333 3.11220 3.14578 3.71295 3.75954 3.87662 4.08225 4.12622 4.19557 4.21565 4.30662 4.49014 4.54328 4.61182 4.61902 4.69080 4.82817 4.92441 4.94966 4.95569 5.04358 5.13671 5.16193 5.23004 5.45031 5.46116 5.52802 5.57568 5.70416 5.84121 5.90694 6.22316 6.86371 6.95904 7.38705 7.52960 8.93266 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.002234 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.506409 B =12529.938653 C =13226.219394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.098 4.098 11 C 0.149 3.851 12 N -0.731 5.731 13 C 0.695 3.305 14 O -0.641 6.641 15 N -0.625 5.625 16 C 0.100 3.900 17 C -0.132 4.132 18 C -0.103 4.103 19 C -0.103 4.103 20 H 0.068 0.932 21 C -0.146 4.146 22 C 0.438 3.562 23 F -0.198 7.198 24 F -0.190 7.190 25 F -0.192 7.192 26 C 0.107 3.893 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.009 1.009 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.409 0.591 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.773 -29.065 -3.201 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.136 4.136 11 C 0.024 3.976 12 N -0.389 5.389 13 C 0.397 3.603 14 O -0.522 6.522 15 N -0.362 5.362 16 C -0.022 4.022 17 C -0.170 4.170 18 C -0.140 4.140 19 C -0.123 4.123 20 H 0.086 0.914 21 C -0.184 4.184 22 C 0.384 3.616 23 F -0.179 7.179 24 F -0.171 7.171 25 F -0.174 7.174 26 C -0.015 4.015 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.104 0.896 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.755 -29.104 -3.148 32.782 hybrid contribution -0.582 1.250 -0.056 1.380 sum 14.173 -27.854 -3.204 31.416 Atomic orbital electron populations 1.70127 1.08026 1.27742 1.51800 1.26058 0.95754 1.03673 0.94810 0.85338 0.79237 0.78501 0.77585 1.18024 1.20608 1.20626 1.21704 0.93783 0.91872 1.50275 0.91369 1.18947 0.94450 0.93018 0.95031 1.21575 0.98407 0.91508 1.02132 1.21082 0.91428 0.84834 1.00264 1.45208 1.10757 1.03565 1.79345 1.16161 0.84780 0.81596 0.77795 1.90885 1.16875 1.84535 1.59951 1.47316 1.06626 1.05354 1.76911 1.22007 0.78108 1.01662 1.00456 1.21923 1.02256 0.95977 0.96861 1.21519 0.91223 0.96535 1.04733 1.21623 0.99272 0.93165 0.98213 0.91384 1.22997 0.85887 0.99524 1.09972 1.21355 0.94150 0.72916 0.73152 1.93169 1.93882 1.83073 1.47799 1.93177 1.94099 1.33703 1.96148 1.93139 1.83996 1.82701 1.57562 1.22237 1.00746 0.80134 0.98431 0.92827 0.99035 0.99035 0.91273 0.91294 0.93724 0.93782 0.75150 0.90001 0.88998 0.92686 0.87588 0.89038 0.89149 0.83968 0.84363 0.89552 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 11 C 0.15 5.60 5.68 86.38 0.49 6.09 16 12 N -0.73 -21.99 5.47 -478.51 -2.62 -24.60 16 13 C 0.70 22.73 8.30 179.06 1.49 24.21 16 14 O -0.64 -27.56 15.78 -4.01 -0.06 -27.63 16 15 N -0.63 -13.90 2.97 -836.06 -2.48 -16.38 16 16 C 0.10 1.27 6.43 86.36 0.56 1.82 16 17 C -0.13 -1.10 6.08 30.67 0.19 -0.91 16 18 C -0.10 -0.58 5.16 30.62 0.16 -0.42 16 19 C -0.10 -1.23 2.29 -10.57 -0.02 -1.25 16 20 H 0.07 1.13 7.66 -2.39 -0.02 1.12 16 21 C -0.15 -1.10 4.84 30.59 0.15 -0.96 16 22 C 0.44 7.23 3.15 71.98 0.23 7.46 16 23 F -0.20 -4.16 16.71 44.97 0.75 -3.41 16 24 F -0.19 -3.17 17.32 44.97 0.78 -2.39 16 25 F -0.19 -4.30 13.92 44.97 0.63 -3.67 16 26 C 0.11 2.07 4.97 86.51 0.43 2.50 16 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 9.33 5.93 -92.71 -0.55 8.78 16 35 H 0.08 1.01 5.57 -2.38 -0.01 0.99 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.08 2.13 4.48 -2.39 -0.01 2.12 16 Total: -1.00 -78.68 361.70 4.43 -74.25 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.46 Total: 9.04 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 4.66 Total: 6.40 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -4.81 Total: -98.54 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.06 Total: -27.63 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.16 Total: -9.48 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -78.68 4.43 -74.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420798410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.331 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds