Wall clock time and date at job start Tue Mar 31 2020 13:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46739 * 2 1 4 4 C 1.53002 * 109.47369 * 239.99998 * 2 1 3 5 5 C 1.50697 * 109.46806 * 64.99394 * 4 2 1 6 6 H 1.07998 * 120.00650 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99853 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47127 * 60.00396 * 9 7 5 11 11 H 1.48506 * 109.46583 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47241 * 300.00108 * 9 7 5 13 13 C 1.52995 * 109.47448 * 119.99595 * 2 1 3 14 14 N 1.46905 * 109.47326 * 183.32508 * 13 2 1 15 15 C 1.46956 * 110.99933 * 188.28529 * 14 13 2 16 16 C 1.53049 * 109.36399 * 176.81163 * 15 14 13 17 17 N 1.46959 * 109.37972 * 58.38733 * 16 15 14 18 18 C 1.39757 * 110.99849 * 176.82397 * 17 16 15 19 19 C 1.38884 * 120.07807 * 113.89893 * 18 17 16 20 20 C 1.38114 * 119.93527 * 179.72257 * 19 18 17 21 21 C 1.38292 * 120.09513 * 0.55442 * 20 19 18 22 22 C 1.38275 * 120.16007 * 359.71730 * 21 20 19 23 23 C 1.38219 * 120.05477 * 0.02562 * 22 21 20 24 24 Cl 1.73606 * 120.04224 * 180.02562 * 23 22 21 25 25 C 1.46957 * 110.88337 * 300.70978 * 17 16 15 26 26 C 1.46946 * 110.99986 * 64.48420 * 14 13 2 27 27 H 1.09003 * 109.46995 * 304.78740 * 1 2 3 28 28 H 1.08993 * 109.47592 * 64.79754 * 1 2 3 29 29 H 1.09008 * 109.47159 * 184.79713 * 1 2 3 30 30 H 1.08997 * 109.47257 * 184.99369 * 4 2 1 31 31 H 1.08999 * 109.46675 * 305.00166 * 4 2 1 32 32 H 0.97002 * 120.00146 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47197 * 63.32576 * 13 2 1 34 34 H 1.08998 * 109.47347 * 303.32724 * 13 2 1 35 35 H 1.09000 * 109.49439 * 56.84010 * 15 14 13 36 36 H 1.09006 * 109.50452 * 296.79035 * 15 14 13 37 37 H 1.08998 * 109.49232 * 178.36265 * 16 15 14 38 38 H 1.09000 * 109.48917 * 298.41412 * 16 15 14 39 39 H 1.07997 * 120.02759 * 359.97438 * 19 18 17 40 40 H 1.07999 * 119.95214 * 180.26906 * 20 19 18 41 41 H 1.08005 * 119.92530 * 179.74346 * 21 20 19 42 42 H 1.07994 * 119.97270 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47366 * 299.32624 * 25 17 16 44 44 H 1.09001 * 109.50443 * 179.27600 * 25 17 16 45 45 H 1.09010 * 109.49044 * 303.15914 * 26 14 13 46 46 H 1.09003 * 109.49219 * 63.19812 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6412 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6765 -1.5187 -3.8511 9 14 1.4995 0.5633 -5.2496 10 1 2.0915 1.9237 -5.1865 11 1 1.9945 -0.1368 -6.4621 12 1 0.0195 0.6698 -5.3095 13 6 2.0400 -0.7211 1.2492 14 7 3.5069 -0.6519 1.2900 15 6 4.0443 -1.4975 2.3651 16 6 5.5737 -1.4603 2.3235 17 7 6.0319 -0.0717 2.4705 18 6 7.4274 -0.0062 2.5090 19 6 8.1236 0.6178 1.4819 20 6 9.5023 0.6859 1.5258 21 6 10.1910 0.1235 2.5851 22 6 9.5023 -0.5037 3.6069 23 6 8.1222 -0.5708 3.5722 24 17 7.2577 -1.3578 4.8556 25 6 5.4942 0.7739 1.3956 26 6 3.9647 0.7366 1.4373 27 1 -0.3633 0.5863 0.8440 28 1 -0.3634 0.4376 -0.9297 29 1 -0.3634 -1.0241 0.0859 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2951 32 1 2.9238 -1.8417 -4.7317 33 1 1.7262 -1.7646 1.2200 34 1 1.6289 -0.2429 2.1382 35 1 3.7015 -2.5230 2.2271 36 1 3.6975 -1.1248 3.3290 37 1 5.9745 -2.0636 3.1381 38 1 5.9214 -1.8589 1.3705 39 1 7.5870 1.0530 0.6519 40 1 10.0437 1.1749 0.7295 41 1 11.2695 0.1747 2.6145 42 1 10.0431 -0.9414 4.4328 43 1 5.8409 0.4010 0.4320 44 1 5.8369 1.7995 1.5334 45 1 3.5639 1.3401 0.6228 46 1 3.6167 1.1352 2.3903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602429150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:28 Heat of formation + Delta-G solvation = 28.037725 kcal Electronic energy + Delta-G solvation = -25314.213892 eV Core-core repulsion = 21843.337181 eV Total energy + Delta-G solvation = -3470.876711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46545 -38.49446 -36.51835 -36.24837 -33.97974 -32.05498 -31.36326 -30.48068 -29.92012 -27.16418 -26.58850 -24.27024 -24.13512 -22.57604 -22.11240 -21.76025 -19.74088 -18.71454 -17.87666 -16.30807 -16.25166 -15.89762 -15.33164 -14.89511 -14.79240 -14.45888 -14.31785 -14.16964 -13.95908 -13.85700 -13.54549 -13.03302 -12.56640 -12.20124 -12.16014 -11.98462 -11.70008 -11.61709 -11.52674 -11.32818 -11.29177 -11.03912 -10.91480 -10.83040 -10.73394 -10.52446 -10.29129 -10.00654 -9.68405 -9.59910 -9.06178 -8.97285 -8.85660 -8.25080 -8.01567 -7.83057 -5.89453 -3.90141 1.00946 1.09928 2.08089 3.36560 3.38591 3.41467 3.43465 3.70437 4.21114 4.52647 4.61384 4.75386 4.87333 5.04604 5.10544 5.16351 5.29542 5.33690 5.42409 5.45835 5.51595 5.60015 5.64006 5.72214 5.82237 5.84461 5.97525 5.98703 6.05153 6.08804 6.12047 6.17926 6.25532 6.28284 6.39325 6.49837 6.53516 6.86383 6.97566 7.03036 7.10852 7.29558 7.45640 7.53401 7.84728 8.05927 8.19698 8.56095 9.17764 9.72026 11.21446 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003210 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.774874 B = 8721.449599 C = 9895.345418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.515 4.515 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.066 3.934 14 N -0.526 5.526 15 C 0.059 3.941 16 C 0.054 3.946 17 N -0.488 5.488 18 C 0.126 3.874 19 C -0.158 4.158 20 C -0.090 4.090 21 C -0.138 4.138 22 C -0.092 4.092 23 C -0.054 4.054 24 Cl -0.063 7.063 25 C 0.053 3.947 26 C 0.058 3.942 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.069 0.931 34 H 0.018 0.982 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.503 2.296 16.456 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.074 0.926 4 C 0.000 4.000 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.061 4.061 14 N -0.251 5.251 15 C -0.069 4.069 16 C -0.071 4.071 17 N -0.204 5.204 18 C 0.027 3.973 19 C -0.179 4.179 20 C -0.109 4.109 21 C -0.157 4.157 22 C -0.111 4.111 23 C -0.083 4.083 24 Cl -0.034 7.034 25 C -0.074 4.074 26 C -0.070 4.070 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.391 2.074 16.434 20.686 hybrid contribution -0.359 0.507 -0.738 0.964 sum 12.032 2.581 15.696 19.945 Atomic orbital electron populations 1.21718 0.96406 1.00411 1.00653 1.21265 0.94373 0.99134 0.95660 0.92623 1.19018 0.97294 0.94522 0.89141 1.21287 1.34436 1.08187 0.91429 0.93068 1.24981 0.95474 0.95058 0.98823 1.69966 1.39079 1.21165 1.23180 0.86789 0.78810 0.80190 0.82943 1.20430 1.21451 1.20446 1.22236 0.85475 1.00960 0.97458 1.62087 1.10341 1.08444 1.44205 1.22113 0.93244 0.98509 0.93072 1.22451 0.95848 0.86779 1.02043 1.59314 1.04573 1.10984 1.45505 1.18770 0.89109 0.96850 0.92579 1.21504 0.94790 1.03713 0.97852 1.21137 0.93866 0.97872 0.98013 1.21019 1.00011 1.00064 0.94603 1.20926 0.91516 0.99240 0.99442 1.20589 0.92188 1.03852 0.91632 1.98341 1.77119 1.78850 1.49048 1.22407 0.95580 0.96865 0.92513 1.22178 0.93215 0.90751 1.00874 0.95310 0.91554 0.93768 0.95000 0.97283 0.93228 0.91280 0.96360 0.90052 0.94528 0.89181 0.92769 0.84362 0.85427 0.85380 0.85049 0.92049 0.90000 0.88772 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.08 37.16 0.34 -2.16 16 2 C -0.09 -1.71 2.21 -90.62 -0.20 -1.91 16 3 H 0.06 1.12 6.29 -51.93 -0.33 0.79 16 4 C 0.04 0.94 4.38 -27.88 -0.12 0.82 16 5 C -0.51 -14.29 8.34 -34.44 -0.29 -14.58 16 6 H 0.05 1.38 7.08 -52.49 -0.37 1.01 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 9 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.07 1.13 4.37 -3.82 -0.02 1.12 16 14 N -0.53 -8.77 4.02 -234.46 -0.94 -9.71 16 15 C 0.06 0.85 5.61 -3.77 -0.02 0.83 16 16 C 0.05 0.74 5.23 -3.77 -0.02 0.72 16 17 N -0.49 -6.58 4.40 -170.91 -0.75 -7.33 16 18 C 0.13 1.59 5.43 -83.73 -0.45 1.13 16 19 C -0.16 -1.81 8.84 -39.39 -0.35 -2.15 16 20 C -0.09 -0.86 10.04 -39.61 -0.40 -1.26 16 21 C -0.14 -1.22 10.04 -39.55 -0.40 -1.62 16 22 C -0.09 -0.90 9.82 -39.57 -0.39 -1.29 16 23 C -0.05 -0.63 6.14 -39.31 -0.24 -0.87 16 24 Cl -0.06 -0.71 25.88 -51.86 -1.34 -2.06 16 25 C 0.05 0.73 4.32 -3.77 -0.02 0.71 16 26 C 0.06 0.88 5.40 -3.77 -0.02 0.86 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.34 6.83 -51.93 -0.35 0.99 16 29 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.03 0.87 7.56 -51.93 -0.39 0.48 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 34 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 35 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.14 5.33 -51.93 -0.28 0.87 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.14 1.54 5.88 -52.49 -0.31 1.23 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.06 0.92 7.12 -51.93 -0.37 0.55 16 44 H 0.08 0.99 7.67 -51.93 -0.40 0.60 16 45 H 0.09 1.54 6.21 -51.92 -0.32 1.22 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -30.21 368.74 -11.78 -41.99 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.32 Total: -0.81 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.69 Total: -18.10 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.96 Total: -43.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.34 Total: -2.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.21 -11.78 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.025 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds