Wall clock time and date at job start Tue Mar 31 2020 13:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46739 * 2 1 4 4 C 1.53002 * 109.47369 * 239.99998 * 2 1 3 5 5 C 1.50697 * 109.46806 * 64.99394 * 4 2 1 6 6 H 1.07998 * 120.00650 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99768 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99853 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47127 * 60.00396 * 9 7 5 11 11 H 1.48506 * 109.46583 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47241 * 300.00108 * 9 7 5 13 13 C 1.52995 * 109.47448 * 119.99595 * 2 1 3 14 14 N 1.46905 * 109.47326 * 183.32508 * 13 2 1 15 15 C 1.46956 * 110.99933 * 188.28529 * 14 13 2 16 16 C 1.53049 * 109.36399 * 176.81163 * 15 14 13 17 17 N 1.46959 * 109.37972 * 58.38733 * 16 15 14 18 18 C 1.39757 * 110.99849 * 176.82397 * 17 16 15 19 19 C 1.38884 * 120.07807 * 113.89893 * 18 17 16 20 20 C 1.38114 * 119.93527 * 179.72257 * 19 18 17 21 21 C 1.38292 * 120.09513 * 0.55442 * 20 19 18 22 22 C 1.38275 * 120.16007 * 359.71730 * 21 20 19 23 23 C 1.38219 * 120.05477 * 0.02562 * 22 21 20 24 24 Cl 1.73606 * 120.04224 * 180.02562 * 23 22 21 25 25 C 1.46957 * 110.88337 * 300.70978 * 17 16 15 26 26 C 1.46946 * 110.99986 * 64.48420 * 14 13 2 27 27 H 1.09003 * 109.46995 * 304.78740 * 1 2 3 28 28 H 1.08993 * 109.47592 * 64.79754 * 1 2 3 29 29 H 1.09008 * 109.47159 * 184.79713 * 1 2 3 30 30 H 1.08997 * 109.47257 * 184.99369 * 4 2 1 31 31 H 1.08999 * 109.46675 * 305.00166 * 4 2 1 32 32 H 0.97002 * 120.00146 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47197 * 63.32576 * 13 2 1 34 34 H 1.08998 * 109.47347 * 303.32724 * 13 2 1 35 35 H 1.09000 * 109.49439 * 56.84010 * 15 14 13 36 36 H 1.09006 * 109.50452 * 296.79035 * 15 14 13 37 37 H 1.08998 * 109.49232 * 178.36265 * 16 15 14 38 38 H 1.09000 * 109.48917 * 298.41412 * 16 15 14 39 39 H 1.07997 * 120.02759 * 359.97438 * 19 18 17 40 40 H 1.07999 * 119.95214 * 180.26906 * 20 19 18 41 41 H 1.08005 * 119.92530 * 179.74346 * 21 20 19 42 42 H 1.07994 * 119.97270 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47366 * 299.32624 * 25 17 16 44 44 H 1.09001 * 109.50443 * 179.27600 * 25 17 16 45 45 H 1.09010 * 109.49044 * 303.15914 * 26 14 13 46 46 H 1.09003 * 109.49219 * 63.19812 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6412 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6765 -1.5187 -3.8511 9 14 1.4995 0.5633 -5.2496 10 1 2.0915 1.9237 -5.1865 11 1 1.9945 -0.1368 -6.4621 12 1 0.0195 0.6698 -5.3095 13 6 2.0400 -0.7211 1.2492 14 7 3.5069 -0.6519 1.2900 15 6 4.0443 -1.4975 2.3651 16 6 5.5737 -1.4603 2.3235 17 7 6.0319 -0.0717 2.4705 18 6 7.4274 -0.0062 2.5090 19 6 8.1236 0.6178 1.4819 20 6 9.5023 0.6859 1.5258 21 6 10.1910 0.1235 2.5851 22 6 9.5023 -0.5037 3.6069 23 6 8.1222 -0.5708 3.5722 24 17 7.2577 -1.3578 4.8556 25 6 5.4942 0.7739 1.3956 26 6 3.9647 0.7366 1.4373 27 1 -0.3633 0.5863 0.8440 28 1 -0.3634 0.4376 -0.9297 29 1 -0.3634 -1.0241 0.0859 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2951 32 1 2.9238 -1.8417 -4.7317 33 1 1.7262 -1.7646 1.2200 34 1 1.6289 -0.2429 2.1382 35 1 3.7015 -2.5230 2.2271 36 1 3.6975 -1.1248 3.3290 37 1 5.9745 -2.0636 3.1381 38 1 5.9214 -1.8589 1.3705 39 1 7.5870 1.0530 0.6519 40 1 10.0437 1.1749 0.7295 41 1 11.2695 0.1747 2.6145 42 1 10.0431 -0.9414 4.4328 43 1 5.8409 0.4010 0.4320 44 1 5.8369 1.7995 1.5334 45 1 3.5639 1.3401 0.6228 46 1 3.6167 1.1352 2.3903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602429150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:27 Heat of formation + Delta-G solvation = 11.660384 kcal Electronic energy + Delta-G solvation = -25314.924067 eV Core-core repulsion = 21843.337181 eV Total energy + Delta-G solvation = -3471.586886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44198 -39.59408 -37.57864 -37.35703 -35.54255 -33.99077 -32.37853 -31.42212 -30.96392 -29.02966 -27.88039 -25.66290 -25.32223 -24.33436 -23.03991 -22.72164 -20.94318 -20.29756 -18.79698 -18.42643 -17.19011 -16.84770 -16.58443 -16.44873 -15.97460 -15.84944 -15.59935 -15.22448 -15.15228 -14.77960 -14.60758 -14.38613 -14.17411 -13.80973 -13.44328 -13.30169 -13.00999 -12.81953 -12.73393 -12.64408 -12.58148 -12.47278 -12.29736 -12.21531 -12.11731 -11.97349 -11.89231 -11.39893 -11.30200 -10.91529 -10.82572 -10.60548 -10.44943 -9.79129 -9.13313 -8.95220 -8.09679 -6.18014 0.19736 0.28514 1.22538 1.40943 1.43152 1.50600 2.45612 2.51592 2.77616 2.96682 3.23231 3.74619 3.82483 3.93161 4.03001 4.11859 4.19059 4.25041 4.34196 4.35243 4.38635 4.46841 4.49770 4.55515 4.58046 4.72499 4.76213 4.82908 4.84656 4.85236 4.93581 4.96603 5.06037 5.13967 5.27475 5.31551 5.46272 5.48416 5.52491 5.68871 5.71038 5.82312 5.94469 6.04639 6.11963 6.21208 6.26659 6.39924 7.00592 7.49036 9.01428 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003210 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.774874 B = 8721.449599 C = 9895.345418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.078 4.078 3 H 0.055 0.945 4 C 0.051 3.949 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.075 3.925 14 N -0.551 5.551 15 C 0.063 3.937 16 C 0.061 3.939 17 N -0.488 5.488 18 C 0.100 3.900 19 C -0.172 4.172 20 C -0.092 4.092 21 C -0.129 4.129 22 C -0.094 4.094 23 C -0.066 4.066 24 Cl -0.066 7.066 25 C 0.062 3.938 26 C 0.062 3.938 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.001 0.999 31 H -0.024 1.024 32 H 0.259 0.741 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.101 0.899 38 H 0.031 0.969 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.040 0.960 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.359 3.563 17.464 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.013 3.987 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.053 4.053 14 N -0.276 5.276 15 C -0.065 4.065 16 C -0.065 4.065 17 N -0.204 5.204 18 C 0.002 3.998 19 C -0.192 4.192 20 C -0.111 4.111 21 C -0.147 4.147 22 C -0.113 4.113 23 C -0.095 4.095 24 Cl -0.037 7.037 25 C -0.066 4.066 26 C -0.066 4.066 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.020 0.980 31 H -0.006 1.006 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.119 0.881 38 H 0.049 0.951 39 H 0.151 0.849 40 H 0.168 0.832 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.058 0.942 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.252 3.355 17.459 22.174 hybrid contribution -0.519 0.096 -1.037 1.163 sum 12.733 3.451 16.422 21.065 Atomic orbital electron populations 1.21644 0.95013 1.00950 1.01071 1.21111 0.95509 0.98595 0.94481 0.92656 1.18796 0.95171 0.93240 0.91452 1.21710 1.34015 1.08425 0.92494 0.92502 1.25873 0.95462 0.96038 1.02332 1.70118 1.40448 1.22960 1.23902 0.85681 0.78829 0.78909 0.78693 1.19331 1.21275 1.19429 1.22055 0.86079 1.00410 0.96708 1.62031 1.10130 1.09594 1.45811 1.22110 0.93525 0.98211 0.92656 1.22359 0.95428 0.87512 1.01174 1.59358 1.05599 1.10383 1.45038 1.18918 0.88666 0.98524 0.93724 1.21613 0.95916 1.04047 0.97651 1.21460 0.93134 0.97545 0.98912 1.21429 1.01610 0.98258 0.93443 1.21263 0.90794 0.98880 1.00330 1.20789 0.93046 1.04188 0.91470 1.98333 1.77380 1.78909 1.49039 1.22290 0.94643 0.97777 0.91843 1.22115 0.94073 0.89824 1.00564 0.91893 0.93519 0.93716 0.98015 1.00560 0.93274 0.91786 0.94011 0.89862 0.93608 0.88100 0.95094 0.84891 0.83179 0.82156 0.82925 0.94153 0.88440 0.90384 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.08 71.98 0.65 -4.04 16 2 C -0.08 -3.15 2.21 -10.80 -0.02 -3.17 16 3 H 0.06 2.23 6.29 -2.38 -0.01 2.22 16 4 C 0.05 2.66 4.38 29.85 0.13 2.79 16 5 C -0.53 -29.90 8.34 25.60 0.21 -29.68 16 6 H 0.06 3.09 7.08 -2.91 -0.02 3.07 16 7 C 0.00 0.00 5.46 84.66 0.46 0.46 16 8 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 9 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 C 0.07 2.55 4.37 86.30 0.38 2.93 16 14 N -0.55 -18.64 4.02 -895.71 -3.60 -22.24 16 15 C 0.06 1.81 5.61 86.31 0.48 2.30 16 16 C 0.06 1.70 5.23 86.31 0.45 2.15 16 17 N -0.49 -13.19 4.40 -694.65 -3.06 -16.25 16 18 C 0.10 2.49 5.43 38.21 0.21 2.70 16 19 C -0.17 -3.87 8.84 22.40 0.20 -3.67 16 20 C -0.09 -1.58 10.04 22.25 0.22 -1.36 16 21 C -0.13 -1.90 10.04 22.29 0.22 -1.68 16 22 C -0.09 -1.61 9.82 22.27 0.22 -1.40 16 23 C -0.07 -1.48 6.14 22.44 0.14 -1.34 16 24 Cl -0.07 -1.43 25.88 -2.72 -0.07 -1.50 16 25 C 0.06 1.73 4.32 86.31 0.37 2.10 16 26 C 0.06 1.91 5.40 86.31 0.47 2.38 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.86 6.83 -2.39 -0.02 1.84 16 29 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.00 0.08 7.56 -2.39 -0.02 0.07 16 31 H -0.02 -1.41 8.14 -2.39 -0.02 -1.42 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 34 H 0.04 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 36 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.10 2.57 5.33 -2.39 -0.01 2.56 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.13 3.04 5.88 -2.91 -0.02 3.02 16 40 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.04 1.29 7.12 -2.39 -0.02 1.27 16 44 H 0.10 2.38 7.67 -2.39 -0.02 2.36 16 45 H 0.08 2.61 6.21 -2.38 -0.01 2.60 16 46 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -66.38 368.74 1.33 -65.05 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.96 Total: 14.15 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.80 Total: -28.53 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -6.37 Total: -95.98 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal Total: -66.38 1.33 -65.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602429150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.709 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds