Wall clock time and date at job start Tue Mar 31 2020 13:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45193 * 109.47106 * 2 1 4 4 C 1.34237 * 117.00043 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99674 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99996 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47044 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.46960 * 54.99811 * 7 6 4 9 9 C 1.50698 * 109.47132 * 175.00164 * 7 6 4 10 10 H 1.08004 * 120.00314 * 240.00213 * 9 7 6 11 11 C 1.37877 * 120.00122 * 60.00293 * 9 7 6 12 12 N 1.31518 * 119.99717 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00169 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46963 * 89.99724 * 13 11 9 15 15 H 1.48496 * 109.47345 * 209.99976 * 13 11 9 16 16 H 1.48501 * 109.46971 * 330.00136 * 13 11 9 17 17 O 1.42902 * 109.47109 * 295.00049 * 7 6 4 18 18 C 1.35904 * 116.99848 * 155.87755 * 17 7 6 19 19 C 1.38659 * 120.02458 * 5.49118 * 18 17 7 20 20 C 1.38609 * 119.88757 * 179.97438 * 19 18 17 21 21 O 1.35897 * 120.02639 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99988 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.47170 * 179.97438 * 22 21 20 24 24 C 1.38794 * 119.94706 * 0.02562 * 20 19 18 25 25 C 1.38154 * 120.05625 * 359.97438 * 24 20 19 26 26 C 1.38196 * 120.10716 * 359.97438 * 25 24 20 27 27 C 1.50699 * 119.97433 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47053 * 60.00232 * 1 2 3 29 29 H 1.09002 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46841 * 299.99892 * 1 2 3 31 31 H 1.08994 * 109.46947 * 239.99751 * 2 1 3 32 32 H 1.08996 * 109.46778 * 120.00239 * 2 1 3 33 33 H 1.08997 * 109.46937 * 60.00185 * 6 4 3 34 34 H 1.08994 * 109.47542 * 300.00377 * 6 4 3 35 35 H 0.97004 * 119.99340 * 180.02562 * 12 11 9 36 36 H 1.07992 * 120.05756 * 0.25359 * 19 18 17 37 37 H 1.09000 * 109.47271 * 299.99503 * 22 21 20 38 38 H 1.08999 * 109.47073 * 59.99642 * 22 21 20 39 39 H 1.08999 * 109.47125 * 60.00029 * 23 22 21 40 40 H 1.08997 * 109.47239 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.46908 * 300.00081 * 23 22 21 42 42 H 1.08002 * 119.97632 * 180.02562 * 24 20 19 43 43 H 1.07993 * 119.94923 * 180.02562 * 25 24 20 44 44 H 1.09001 * 109.47002 * 90.00244 * 27 26 25 45 45 H 1.08997 * 109.47425 * 210.00233 * 27 26 25 46 46 H 1.08993 * 109.47214 * 330.00794 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7814 2.2489 -0.8396 9 6 6.0245 4.2443 -0.1229 10 1 6.6600 4.4922 -0.9603 11 6 5.7400 5.1970 0.8323 12 7 4.9658 4.8954 1.8517 13 14 6.4544 6.9162 0.6786 14 1 5.5209 7.7726 -0.0964 15 1 6.6485 7.4945 2.0324 16 1 7.7616 6.8481 -0.0227 17 8 5.8934 2.2646 1.2233 18 6 7.1112 1.6614 1.2090 19 6 7.9105 1.7386 0.0786 20 6 9.1522 1.1227 0.0673 21 8 9.9380 1.1970 -1.0389 22 6 11.2049 0.5384 -0.9802 23 6 11.9414 0.7300 -2.3075 24 6 9.5923 0.4301 1.1867 25 6 8.7941 0.3546 2.3118 26 6 7.5561 0.9687 2.3259 27 6 6.6876 0.8840 3.5545 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 3.5844 3.4700 0.8895 34 1 3.5852 3.4690 -0.8904 35 1 4.7654 5.5658 2.5235 36 1 7.5680 2.2814 -0.7899 37 1 11.7981 0.9633 -0.1705 38 1 11.0531 -0.5258 -0.7996 39 1 12.0932 1.7941 -2.4884 40 1 12.9078 0.2280 -2.2625 41 1 11.3480 0.3049 -3.1169 42 1 10.5599 -0.0496 1.1785 43 1 9.1384 -0.1844 3.1819 44 1 6.9087 1.7230 4.2143 45 1 5.6385 0.9192 3.2611 46 1 6.8876 -0.0514 4.0770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228725154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:17 Heat of formation + Delta-G solvation = -151.932205 kcal Electronic energy + Delta-G solvation = -28142.120700 eV Core-core repulsion = 24190.437991 eV Total energy + Delta-G solvation = -3951.682709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.89613 -39.58246 -38.16158 -36.35146 -35.63120 -33.15518 -32.11755 -31.57940 -30.66651 -30.25481 -28.96698 -26.32927 -25.46319 -23.62076 -23.22603 -22.38835 -21.04362 -20.37180 -19.64564 -18.16169 -17.17207 -16.45499 -16.16105 -15.80794 -15.77944 -15.43095 -15.19785 -14.66599 -14.56071 -13.87372 -13.73422 -13.61496 -13.07949 -12.94703 -12.89557 -12.65419 -12.55330 -12.39280 -12.15129 -11.93720 -11.72635 -11.67987 -11.42182 -11.26094 -11.16159 -11.03890 -11.00692 -10.85082 -10.68638 -10.54602 -10.20300 -10.12259 -10.05084 -9.69257 -9.34709 -9.11986 -8.72753 -7.62895 -6.97186 -6.21528 -4.41108 2.13977 2.32235 3.03465 3.19915 3.29058 3.31655 3.35763 3.60086 4.27138 4.56246 4.56961 5.02491 5.09548 5.09830 5.14349 5.18173 5.32213 5.39726 5.46044 5.49355 5.54487 5.69168 5.83351 5.84875 5.90790 5.92299 5.97459 6.05301 6.08455 6.22438 6.31894 6.38685 6.42435 6.50820 6.55085 6.70518 6.75070 6.98201 7.00769 7.11304 7.26958 7.33708 7.58527 7.68985 7.89944 8.00671 8.50494 8.57268 8.91268 9.36311 10.79654 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.004838 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.360303 B = 5786.603188 C = 7353.006569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.456 3.544 5 O -0.513 6.513 6 C -0.101 4.101 7 C 0.222 3.778 8 H 0.034 0.966 9 C -0.558 4.558 10 H 0.068 0.932 11 C 0.086 3.914 12 N -0.858 5.858 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.271 1.271 17 O -0.279 6.279 18 C 0.222 3.778 19 C -0.233 4.233 20 C 0.153 3.847 21 O -0.319 6.319 22 C 0.057 3.943 23 C -0.151 4.151 24 C -0.271 4.271 25 C -0.054 4.054 26 C -0.175 4.175 27 C -0.087 4.087 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.267 0.733 36 H 0.139 0.861 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 -8.302 -2.114 8.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.300 3.700 5 O -0.400 6.400 6 C -0.138 4.138 7 C 0.168 3.832 8 H 0.052 0.948 9 C -0.595 4.595 10 H 0.086 0.914 11 C -0.121 4.121 12 N -0.493 5.493 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.196 1.196 17 O -0.189 6.189 18 C 0.172 3.828 19 C -0.253 4.253 20 C 0.108 3.892 21 O -0.233 6.233 22 C -0.019 4.019 23 C -0.208 4.208 24 C -0.290 4.290 25 C -0.072 4.072 26 C -0.176 4.176 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.505 -8.421 -1.979 8.780 hybrid contribution 0.684 0.703 -0.036 0.982 sum 2.189 -7.718 -2.016 8.272 Atomic orbital electron populations 1.21777 0.93332 1.02303 1.03309 1.22846 0.94817 0.81824 1.02034 1.86575 1.26182 1.30950 1.84777 1.24904 0.79486 0.94329 0.71267 1.90606 1.60166 1.43585 1.45685 1.21831 0.96596 0.88153 1.07248 1.19821 0.88648 0.92631 0.82088 0.94819 1.21406 1.32711 0.94879 1.10505 0.91361 1.25018 0.93757 0.98938 0.94374 1.69861 1.34294 1.34333 1.10832 0.86543 0.79897 0.83703 0.77694 1.20252 1.20923 1.19555 1.86235 1.28434 1.65487 1.38771 1.18479 0.85764 0.87365 0.91197 1.20537 0.94233 1.09048 1.01439 1.18668 0.90405 0.94810 0.85308 1.86042 1.28751 1.72144 1.36365 1.22642 0.83630 0.96691 0.98892 1.21764 0.99476 1.03157 0.96435 1.20756 1.02303 1.10574 0.95364 1.20381 0.92595 0.97497 0.96716 1.19119 0.97101 1.05101 0.96295 1.20374 0.99589 1.00052 0.94400 0.91735 0.90866 0.91599 0.91911 0.91735 0.84180 0.87956 0.92299 0.84288 0.92440 0.92503 0.91615 0.90857 0.91683 0.86797 0.86557 0.92379 0.91454 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.78 10.22 -39.28 -0.40 -7.18 16 4 C 0.46 9.69 7.84 36.00 0.28 9.97 16 5 O -0.51 -12.00 15.17 -24.04 -0.36 -12.36 16 6 C -0.10 -2.25 5.22 -27.89 -0.15 -2.39 16 7 C 0.22 5.45 1.35 -27.88 -0.04 5.42 16 8 H 0.03 0.84 6.18 -51.93 -0.32 0.51 16 9 C -0.56 -14.39 7.91 -34.44 -0.27 -14.66 16 10 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 11 C 0.09 2.22 5.24 -17.82 -0.09 2.13 16 12 N -0.86 -22.53 10.93 55.43 0.61 -21.92 16 13 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 O -0.28 -7.08 7.47 -33.84 -0.25 -7.34 16 18 C 0.22 5.29 6.56 -39.24 -0.26 5.03 16 19 C -0.23 -5.37 8.62 -39.29 -0.34 -5.71 16 20 C 0.15 3.11 6.68 -39.24 -0.26 2.85 16 21 O -0.32 -5.89 10.13 -19.42 -0.20 -6.08 16 22 C 0.06 0.76 5.46 37.16 0.20 0.97 16 23 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 24 C -0.27 -4.90 9.04 -39.41 -0.36 -5.26 16 25 C -0.05 -0.98 9.69 -39.63 -0.38 -1.37 16 26 C -0.18 -3.70 5.89 -104.45 -0.62 -4.32 16 27 C -0.09 -1.66 9.79 36.01 0.35 -1.31 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 33 H 0.14 3.37 6.22 -51.93 -0.32 3.05 16 34 H 0.10 2.07 8.14 -51.93 -0.42 1.65 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.14 3.33 5.67 -52.49 -0.30 3.03 16 37 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 38 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 1.70 6.29 -52.49 -0.33 1.37 16 43 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.40 7.52 -51.93 -0.39 1.01 16 46 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -29.83 381.71 -7.88 -37.72 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.07 Total: 6.21 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.93 Total: -10.03 kcal Atomic # 7 Polarization: -22.53 SS G_CDS: 0.61 Total: -21.92 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.22 Total: -32.96 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.83 -7.88 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228725154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.215 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds