Wall clock time and date at job start Tue Mar 31 2020 13:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45193 * 109.47106 * 2 1 4 4 C 1.34237 * 117.00043 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99674 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99996 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47044 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.46960 * 54.99811 * 7 6 4 9 9 C 1.50698 * 109.47132 * 175.00164 * 7 6 4 10 10 H 1.08004 * 120.00314 * 240.00213 * 9 7 6 11 11 C 1.37877 * 120.00122 * 60.00293 * 9 7 6 12 12 N 1.31518 * 119.99717 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00169 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46963 * 89.99724 * 13 11 9 15 15 H 1.48496 * 109.47345 * 209.99976 * 13 11 9 16 16 H 1.48501 * 109.46971 * 330.00136 * 13 11 9 17 17 O 1.42902 * 109.47109 * 295.00049 * 7 6 4 18 18 C 1.35904 * 116.99848 * 155.87755 * 17 7 6 19 19 C 1.38659 * 120.02458 * 5.49118 * 18 17 7 20 20 C 1.38609 * 119.88757 * 179.97438 * 19 18 17 21 21 O 1.35897 * 120.02639 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99988 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.47170 * 179.97438 * 22 21 20 24 24 C 1.38794 * 119.94706 * 0.02562 * 20 19 18 25 25 C 1.38154 * 120.05625 * 359.97438 * 24 20 19 26 26 C 1.38196 * 120.10716 * 359.97438 * 25 24 20 27 27 C 1.50699 * 119.97433 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47053 * 60.00232 * 1 2 3 29 29 H 1.09002 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46841 * 299.99892 * 1 2 3 31 31 H 1.08994 * 109.46947 * 239.99751 * 2 1 3 32 32 H 1.08996 * 109.46778 * 120.00239 * 2 1 3 33 33 H 1.08997 * 109.46937 * 60.00185 * 6 4 3 34 34 H 1.08994 * 109.47542 * 300.00377 * 6 4 3 35 35 H 0.97004 * 119.99340 * 180.02562 * 12 11 9 36 36 H 1.07992 * 120.05756 * 0.25359 * 19 18 17 37 37 H 1.09000 * 109.47271 * 299.99503 * 22 21 20 38 38 H 1.08999 * 109.47073 * 59.99642 * 22 21 20 39 39 H 1.08999 * 109.47125 * 60.00029 * 23 22 21 40 40 H 1.08997 * 109.47239 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.46908 * 300.00081 * 23 22 21 42 42 H 1.08002 * 119.97632 * 180.02562 * 24 20 19 43 43 H 1.07993 * 119.94923 * 180.02562 * 25 24 20 44 44 H 1.09001 * 109.47002 * 90.00244 * 27 26 25 45 45 H 1.08997 * 109.47425 * 210.00233 * 27 26 25 46 46 H 1.08993 * 109.47214 * 330.00794 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7814 2.2489 -0.8396 9 6 6.0245 4.2443 -0.1229 10 1 6.6600 4.4922 -0.9603 11 6 5.7400 5.1970 0.8323 12 7 4.9658 4.8954 1.8517 13 14 6.4544 6.9162 0.6786 14 1 5.5209 7.7726 -0.0964 15 1 6.6485 7.4945 2.0324 16 1 7.7616 6.8481 -0.0227 17 8 5.8934 2.2646 1.2233 18 6 7.1112 1.6614 1.2090 19 6 7.9105 1.7386 0.0786 20 6 9.1522 1.1227 0.0673 21 8 9.9380 1.1970 -1.0389 22 6 11.2049 0.5384 -0.9802 23 6 11.9414 0.7300 -2.3075 24 6 9.5923 0.4301 1.1867 25 6 8.7941 0.3546 2.3118 26 6 7.5561 0.9687 2.3259 27 6 6.6876 0.8840 3.5545 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 3.5844 3.4700 0.8895 34 1 3.5852 3.4690 -0.8904 35 1 4.7654 5.5658 2.5235 36 1 7.5680 2.2814 -0.7899 37 1 11.7981 0.9633 -0.1705 38 1 11.0531 -0.5258 -0.7996 39 1 12.0932 1.7941 -2.4884 40 1 12.9078 0.2280 -2.2625 41 1 11.3480 0.3049 -3.1169 42 1 10.5599 -0.0496 1.1785 43 1 9.1384 -0.1844 3.1819 44 1 6.9087 1.7230 4.2143 45 1 5.6385 0.9192 3.2611 46 1 6.8876 -0.0514 4.0770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228725154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:15 Heat of formation + Delta-G solvation = -166.986250 kcal Electronic energy + Delta-G solvation = -28142.773492 eV Core-core repulsion = 24190.437991 eV Total energy + Delta-G solvation = -3952.335501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.54250 -41.12183 -39.73525 -37.92226 -37.27045 -35.04579 -33.43134 -32.89691 -32.10017 -31.74776 -30.56621 -28.20771 -26.98271 -25.08294 -24.49297 -23.78460 -22.60594 -21.85810 -21.35067 -19.73583 -18.88946 -18.19226 -17.70597 -17.40128 -17.07631 -16.96145 -16.85908 -16.38980 -16.18124 -15.49561 -15.20639 -15.04760 -14.57198 -14.44195 -14.25420 -13.90012 -13.78402 -13.67139 -13.57210 -13.35539 -13.22589 -13.04869 -12.95413 -12.82528 -12.64290 -12.53179 -12.48875 -12.44336 -12.25964 -12.15091 -11.72195 -11.51507 -11.49730 -11.41434 -11.19877 -10.92060 -10.68647 -9.25327 -8.61038 -8.17024 -6.43789 0.56012 0.73019 1.31446 1.39550 1.42640 1.51593 1.83144 2.31661 2.37918 2.79472 2.95716 3.24889 3.94074 3.96608 4.00693 4.08170 4.12906 4.15288 4.21282 4.28561 4.34830 4.40193 4.46249 4.49234 4.55513 4.65003 4.70371 4.87884 4.90489 4.91888 4.92862 4.94743 4.96062 5.01523 5.13818 5.16663 5.25578 5.34686 5.44227 5.51068 5.56359 5.68106 5.78632 5.95530 5.98941 6.52863 6.60002 6.87813 7.06484 7.36879 8.82725 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.004838 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.360303 B = 5786.603188 C = 7353.006569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.366 6.366 4 C 0.464 3.536 5 O -0.538 6.538 6 C -0.096 4.096 7 C 0.226 3.774 8 H 0.016 0.984 9 C -0.573 4.573 10 H 0.056 0.944 11 C 0.050 3.950 12 N -0.877 5.877 13 Si 0.951 3.049 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.279 1.279 17 O -0.298 6.298 18 C 0.184 3.816 19 C -0.262 4.262 20 C 0.149 3.851 21 O -0.340 6.340 22 C 0.043 3.957 23 C -0.148 4.148 24 C -0.259 4.259 25 C -0.042 4.042 26 C -0.197 4.197 27 C -0.080 4.080 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.269 0.731 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -9.646 -1.411 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.428 6.428 6 C -0.133 4.133 7 C 0.171 3.829 8 H 0.034 0.966 9 C -0.610 4.610 10 H 0.074 0.926 11 C -0.155 4.155 12 N -0.513 5.513 13 Si 0.776 3.224 14 H -0.188 1.188 15 H -0.207 1.207 16 H -0.204 1.204 17 O -0.210 6.210 18 C 0.135 3.865 19 C -0.282 4.282 20 C 0.103 3.897 21 O -0.255 6.255 22 C -0.031 4.031 23 C -0.204 4.204 24 C -0.277 4.277 25 C -0.060 4.060 26 C -0.198 4.198 27 C -0.136 4.136 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.173 0.827 43 H 0.179 0.821 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.767 -9.769 -1.288 10.235 hybrid contribution 0.382 0.977 -0.307 1.093 sum 3.150 -8.792 -1.595 9.475 Atomic orbital electron populations 1.21806 0.89851 1.04447 1.03706 1.23276 0.97487 0.79710 1.02039 1.86546 1.24194 1.33532 1.84061 1.24527 0.80376 0.93454 0.70754 1.90587 1.61056 1.44162 1.46986 1.21646 0.95521 0.89096 1.07081 1.19700 0.89752 0.91716 0.81701 0.96560 1.21501 1.33004 0.95936 1.10516 0.92598 1.25601 0.94037 1.01841 0.94020 1.69963 1.34923 1.35204 1.11196 0.85676 0.78982 0.80110 0.77616 1.18787 1.20664 1.20370 1.86172 1.29669 1.66426 1.38691 1.18953 0.85679 0.89047 0.92802 1.20477 0.96170 1.10754 1.00775 1.18766 0.89774 0.94425 0.86698 1.86036 1.30633 1.72875 1.35917 1.23097 0.81691 0.97330 1.00967 1.21813 1.00622 1.03166 0.94849 1.21200 1.03608 1.08930 0.93990 1.20881 0.91001 0.95997 0.98113 1.19536 0.98772 1.05419 0.96080 1.20325 0.97519 1.01912 0.93881 0.91072 0.87786 0.91458 0.91597 0.92177 0.85757 0.86558 0.92176 0.86984 0.91085 0.90862 0.92324 0.87439 0.92115 0.82730 0.82107 0.92525 0.94323 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 10.29 71.98 0.74 -2.08 16 2 C 0.05 1.41 6.19 71.98 0.45 1.86 16 3 O -0.37 -13.73 10.22 -51.48 -0.53 -14.25 16 4 C 0.46 20.57 7.84 71.23 0.56 21.12 16 5 O -0.54 -26.37 15.17 27.04 0.41 -25.96 16 6 C -0.10 -4.51 5.22 29.85 0.16 -4.35 16 7 C 0.23 11.82 1.35 29.85 0.04 11.86 16 8 H 0.02 0.89 6.18 -2.39 -0.01 0.87 16 9 C -0.57 -31.14 7.91 25.60 0.20 -30.94 16 10 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.05 2.66 5.24 84.65 0.44 3.10 16 12 N -0.88 -47.51 10.93 21.45 0.23 -47.28 16 13 Si 0.95 42.41 29.54 68.60 2.03 44.43 16 14 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 O -0.30 -16.04 7.47 -78.70 -0.59 -16.63 16 18 C 0.18 9.16 6.56 22.49 0.15 9.31 16 19 C -0.26 -12.73 8.62 22.46 0.19 -12.54 16 20 C 0.15 6.06 6.68 22.49 0.15 6.21 16 21 O -0.34 -12.47 10.13 -92.39 -0.94 -13.41 16 22 C 0.04 1.06 5.46 71.98 0.39 1.45 16 23 C -0.15 -2.81 10.28 71.98 0.74 -2.07 16 24 C -0.26 -8.68 9.04 22.38 0.20 -8.47 16 25 C -0.04 -1.43 9.69 22.24 0.22 -1.21 16 26 C -0.20 -8.30 5.89 -19.75 -0.12 -8.42 16 27 C -0.08 -3.01 9.79 71.24 0.70 -2.31 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 32 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.12 6.29 6.22 -2.39 -0.01 6.28 16 34 H 0.12 4.96 8.14 -2.39 -0.02 4.94 16 35 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 36 H 0.11 5.88 5.67 -2.91 -0.02 5.86 16 37 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 38 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.16 3.87 6.29 -2.91 -0.02 3.86 16 43 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.04 1.65 7.52 -2.39 -0.02 1.63 16 46 H 0.09 2.52 8.08 -2.39 -0.02 2.50 16 Total: -1.00 -68.81 381.71 6.80 -62.00 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.97 Total: 28.56 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.21 Total: -17.47 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.23 Total: -47.28 kcal Atomic # 8 Polarization: -68.60 SS G_CDS: -1.64 Total: -70.24 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -68.81 6.80 -62.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228725154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.981 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds