Wall clock time and date at job start Tue Mar 31 2020 13:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00069 * 2 1 4 4 C 1.53005 * 109.46880 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46882 * 185.00145 * 4 3 2 6 6 C 1.52998 * 109.46924 * 304.99664 * 4 3 2 7 7 O 1.42894 * 109.47569 * 65.00268 * 4 3 2 8 8 C 1.42897 * 114.00302 * 150.00115 * 7 4 3 9 9 C 1.52998 * 109.47144 * 179.97438 * 8 7 4 10 10 H 1.09000 * 109.47347 * 184.99750 * 9 8 7 11 11 C 1.52996 * 109.47342 * 304.99946 * 9 8 7 12 12 O 1.42908 * 109.47181 * 64.99750 * 9 8 7 13 13 C 1.35634 * 116.99966 * 155.12118 * 12 9 8 14 14 C 1.38664 * 120.16168 * 5.42953 * 13 12 9 15 15 C 1.38087 * 120.09195 * 179.74410 * 14 13 12 16 16 C 1.38690 * 120.41615 * 0.54997 * 15 14 13 17 17 C 1.37702 * 120.32055 * 359.70379 * 16 15 14 18 18 C 1.39844 * 119.89915 * 0.02562 * 17 16 15 19 19 C 1.47534 * 120.20121 * 180.02562 * 18 17 16 20 20 O 1.21808 * 119.99771 * 179.97438 * 19 18 17 21 21 C 1.41827 * 120.00262 * 359.97438 * 19 18 17 22 22 H 1.08008 * 119.99828 * 0.02562 * 21 19 18 23 23 C 1.40318 * 120.00230 * 179.97438 * 21 19 18 24 24 N 1.30544 * 120.00141 * 0.02562 * 23 21 19 25 25 Si 1.86799 * 120.00344 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47475 * 90.00006 * 25 23 21 27 27 H 1.48501 * 109.47240 * 210.00431 * 25 23 21 28 28 H 1.48502 * 109.46886 * 329.99907 * 25 23 21 29 29 H 1.09005 * 109.47203 * 59.99430 * 1 2 3 30 30 H 1.09003 * 109.47517 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46887 * 299.99904 * 1 2 3 32 32 H 1.08994 * 109.47350 * 60.00505 * 3 2 1 33 33 H 1.09004 * 109.47624 * 300.00044 * 3 2 1 34 34 H 1.09005 * 109.46948 * 60.00521 * 6 4 3 35 35 H 1.09002 * 109.47387 * 180.02562 * 6 4 3 36 36 H 1.09000 * 109.47400 * 300.00322 * 6 4 3 37 37 H 1.08995 * 109.46970 * 299.99613 * 8 7 4 38 38 H 1.08994 * 109.47271 * 60.00210 * 8 7 4 39 39 H 1.09004 * 109.47075 * 300.00294 * 11 9 8 40 40 H 1.09007 * 109.47425 * 59.99718 * 11 9 8 41 41 H 1.08998 * 109.47375 * 179.97438 * 11 9 8 42 42 H 1.08002 * 119.95538 * 359.97438 * 14 13 12 43 43 H 1.08008 * 119.79615 * 180.27253 * 15 14 13 44 44 H 1.08004 * 119.83943 * 179.71879 * 16 15 14 45 45 H 1.08000 * 120.04591 * 179.97438 * 17 16 15 46 46 H 0.97000 * 120.00417 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9786 2.1764 0.0890 6 6 3.9789 0.3193 1.1807 7 8 3.9649 0.5796 -1.2219 8 6 5.2615 0.9977 -1.6532 9 6 5.6162 0.2901 -2.9625 10 1 6.6388 0.5401 -3.2452 11 6 5.4949 -1.2233 -2.7734 12 8 4.7202 0.7148 -3.9916 13 6 5.1635 0.6241 -5.2702 14 6 6.3882 0.0335 -5.5427 15 6 6.8358 -0.0628 -6.8455 16 6 6.0724 0.4389 -7.8891 17 6 4.8561 1.0334 -7.6375 18 6 4.3874 1.1330 -6.3237 19 6 3.0849 1.7682 -6.0465 20 8 2.6800 1.8525 -4.9008 21 6 2.3043 2.2805 -7.1141 22 1 2.6632 2.2054 -8.1300 23 6 1.0653 2.8842 -6.8505 24 7 0.6313 2.9746 -5.6227 25 14 0.0368 3.5584 -8.2566 26 1 -0.8688 2.4954 -8.7615 27 1 -0.7699 4.7076 -7.7731 28 1 0.9317 4.0083 -9.3529 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.5358 -0.6726 1.0911 35 1 5.0656 0.2335 1.1806 36 1 3.6514 0.7807 2.1123 37 1 5.2615 2.0762 -1.8112 38 1 5.9978 0.7420 -0.8914 39 1 6.1783 -1.5473 -1.9885 40 1 4.4723 -1.4734 -2.4907 41 1 5.7472 -1.7275 -3.7063 42 1 6.9911 -0.3550 -4.7353 43 1 7.7884 -0.5277 -7.0527 44 1 6.4336 0.3626 -8.9041 45 1 4.2655 1.4229 -8.4535 46 1 -0.2254 3.3915 -5.4405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:34 Heat of formation + Delta-G solvation = -165.752284 kcal Electronic energy + Delta-G solvation = -28118.900589 eV Core-core repulsion = 24166.618597 eV Total energy + Delta-G solvation = -3952.281992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19828 -39.80870 -38.84152 -38.06652 -37.67143 -34.70737 -33.89484 -32.34123 -31.87461 -30.47443 -28.64951 -28.32723 -27.50361 -26.57024 -24.52936 -23.89749 -22.23984 -21.60857 -21.48368 -19.13322 -18.45639 -17.99412 -17.35019 -17.28233 -16.95373 -16.57908 -16.44027 -16.07359 -15.94814 -15.65788 -15.44906 -14.96308 -14.93024 -14.57258 -14.17323 -14.14064 -13.78760 -13.62747 -13.31858 -13.24668 -13.18740 -13.02950 -12.78000 -12.72783 -12.67771 -12.58937 -12.24448 -12.14215 -12.07278 -11.88457 -11.82509 -11.56383 -11.50795 -10.95244 -10.65681 -10.47493 -9.69194 -9.41306 -8.91393 -8.23939 -6.97862 0.30447 0.65292 1.35730 1.38031 1.52901 2.22180 2.32598 2.45460 2.68709 2.85020 2.95212 3.71634 3.84115 3.90122 3.96495 4.01589 4.06006 4.08571 4.16259 4.26297 4.32853 4.35105 4.36280 4.47066 4.50695 4.55098 4.59433 4.64730 4.71605 4.75077 4.77548 4.84959 4.86544 4.98428 4.99049 5.20761 5.25243 5.32253 5.37437 5.46816 5.58349 5.74725 5.99216 6.10758 6.14178 6.39840 6.74123 6.77404 6.96577 8.38184 8.60250 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.004975 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.547190 B = 5627.235713 C = 8304.430501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.061 3.939 4 C 0.079 3.921 5 H 0.084 0.916 6 C -0.155 4.155 7 O -0.388 6.388 8 C 0.067 3.933 9 C 0.065 3.935 10 H 0.105 0.895 11 C -0.160 4.160 12 O -0.299 6.299 13 C 0.132 3.868 14 C -0.227 4.227 15 C -0.071 4.071 16 C -0.171 4.171 17 C -0.064 4.064 18 C -0.199 4.199 19 C 0.366 3.634 20 O -0.567 6.567 21 C -0.554 4.554 22 H 0.090 0.910 23 C 0.023 3.977 24 N -0.793 5.793 25 Si 0.993 3.007 26 H -0.260 1.260 27 H -0.269 1.269 28 H -0.245 1.245 29 H 0.022 0.978 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.021 0.979 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.042 0.958 41 H 0.059 0.941 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.155 0.845 45 H 0.131 0.869 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.475 -4.688 7.966 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.015 4.015 4 C 0.022 3.978 5 H 0.102 0.898 6 C -0.212 4.212 7 O -0.308 6.308 8 C -0.009 4.009 9 C 0.009 3.991 10 H 0.122 0.878 11 C -0.217 4.217 12 O -0.212 6.212 13 C 0.086 3.914 14 C -0.245 4.245 15 C -0.089 4.089 16 C -0.189 4.189 17 C -0.082 4.082 18 C -0.200 4.200 19 C 0.263 3.737 20 O -0.458 6.458 21 C -0.585 4.585 22 H 0.108 0.892 23 C -0.194 4.194 24 N -0.422 5.422 25 Si 0.811 3.189 26 H -0.184 1.184 27 H -0.194 1.194 28 H -0.168 1.168 29 H 0.041 0.959 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.170 0.830 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.148 0.852 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.008 -4.850 8.661 14.096 hybrid contribution -0.943 0.813 -0.468 1.330 sum 9.065 -4.038 8.193 12.868 Atomic orbital electron populations 1.22865 0.80252 1.03600 1.00159 1.87859 1.20756 1.28023 1.95422 1.22738 0.93438 0.85045 1.00328 1.22368 0.92586 0.97401 0.85492 0.89801 1.22076 1.01831 1.00577 0.96754 1.88152 1.34118 1.67666 1.40841 1.22714 0.86248 0.97615 0.94311 1.22893 0.93831 0.96100 0.86267 0.87762 1.22143 1.02877 0.93789 1.02931 1.86577 1.42464 1.79679 1.12497 1.19718 0.93182 0.94156 0.84386 1.21466 0.95964 1.07181 0.99891 1.21436 1.00049 0.96487 0.90911 1.21353 0.94675 1.01981 1.00910 1.21462 0.96244 0.96155 0.94375 1.21274 0.99760 1.05488 0.93506 1.18758 0.84966 0.80283 0.89729 1.90514 1.72856 1.57456 1.24964 1.21407 1.04093 1.36750 0.96220 0.89224 1.27224 0.99024 0.94041 0.99147 1.70162 1.17965 1.30963 1.23142 0.85103 0.77872 0.78292 0.77627 1.18442 1.19374 1.16788 0.95924 0.88425 0.91740 0.89130 0.96023 0.92691 0.91104 0.89887 0.94123 0.87700 0.88101 0.93846 0.92158 0.82979 0.81778 0.82706 0.85171 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.03 16 2 O -0.40 -14.17 9.79 -144.35 -1.41 -15.58 16 3 C 0.06 2.01 5.81 71.98 0.42 2.43 16 4 C 0.08 2.37 3.13 30.60 0.10 2.46 16 5 H 0.08 2.18 7.79 -2.38 -0.02 2.17 16 6 C -0.16 -3.49 9.33 71.98 0.67 -2.82 16 7 O -0.39 -14.91 9.04 -135.05 -1.22 -16.13 16 8 C 0.07 2.14 5.62 71.98 0.40 2.54 16 9 C 0.06 2.21 2.63 30.59 0.08 2.29 16 10 H 0.10 2.83 6.32 -2.39 -0.02 2.81 16 11 C -0.16 -4.82 8.97 71.98 0.65 -4.18 16 12 O -0.30 -14.70 7.85 -64.81 -0.51 -15.21 16 13 C 0.13 6.13 6.62 22.90 0.15 6.28 16 14 C -0.23 -7.63 8.23 22.34 0.18 -7.45 16 15 C -0.07 -2.01 10.04 22.34 0.22 -1.79 16 16 C -0.17 -5.39 10.02 22.25 0.22 -5.16 16 17 C -0.06 -2.69 9.43 22.53 0.21 -2.47 16 18 C -0.20 -10.35 5.90 -19.91 -0.12 -10.47 16 19 C 0.37 23.25 6.91 25.61 0.18 23.43 16 20 O -0.57 -40.72 13.71 16.18 0.22 -40.49 16 21 C -0.55 -33.08 8.86 23.66 0.21 -32.87 16 22 H 0.09 4.77 6.02 -2.91 -0.02 4.76 16 23 C 0.02 1.34 5.50 85.39 0.47 1.81 16 24 N -0.79 -49.83 11.73 21.88 0.26 -49.58 16 25 Si 0.99 41.67 29.56 68.60 2.03 43.70 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 28 H -0.24 -9.49 7.11 99.48 0.71 -8.79 16 29 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.05 1.45 7.56 -2.38 -0.02 1.43 16 35 H 0.07 1.31 7.87 -2.39 -0.02 1.29 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 38 H 0.11 2.26 7.87 -2.39 -0.02 2.24 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.61 7.56 -2.38 -0.02 1.60 16 41 H 0.06 1.76 6.90 -2.39 -0.02 1.74 16 42 H 0.15 4.00 5.43 -2.91 -0.02 3.99 16 43 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 44 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.13 5.30 6.20 -2.91 -0.02 5.28 16 46 H 0.28 15.62 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -90.15 380.02 5.64 -84.51 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.97 Total: 32.71 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 5.30 Total: -23.94 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.26 Total: -49.58 kcal Atomic # 8 Polarization: -84.49 SS G_CDS: -2.92 Total: -87.41 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -90.15 5.64 -84.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.239 kcal (2) G-P(sol) polarization free energy of solvation -90.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds