Wall clock time and date at job start Tue Mar 31 2020 13:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 111.00102 * 2 1 4 4 C 1.53040 * 109.52306 * 185.84174 * 3 2 1 5 5 C 1.53124 * 109.27273 * 300.81793 * 4 3 2 6 6 C 1.53118 * 109.16177 * 57.65951 * 5 4 3 7 7 H 1.08998 * 109.53663 * 62.30028 * 6 5 4 8 8 N 1.46899 * 109.50430 * 182.40167 * 6 5 4 9 9 C 1.46900 * 110.99824 * 52.29352 * 8 6 5 10 10 C 1.50697 * 109.47123 * 83.85176 * 9 8 6 11 11 H 1.08002 * 120.00005 * 357.65045 * 10 9 8 12 12 C 1.37876 * 120.00088 * 177.65407 * 10 9 8 13 13 N 1.31526 * 119.99905 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00103 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47180 * 89.99999 * 14 12 10 16 16 H 1.48507 * 109.46873 * 209.99870 * 14 12 10 17 17 H 1.48496 * 109.46933 * 329.99737 * 14 12 10 18 18 C 1.46903 * 111.00036 * 288.34237 * 8 6 5 19 19 C 1.50698 * 109.46901 * 288.11776 * 18 8 6 20 20 C 1.38243 * 119.99083 * 275.32223 * 19 18 8 21 21 C 1.38207 * 120.01461 * 179.72541 * 20 19 18 22 22 C 1.38354 * 119.98842 * 0.54987 * 21 20 19 23 23 Cl 1.73603 * 120.01264 * 179.74755 * 22 21 20 24 24 C 1.38344 * 119.97356 * 359.72052 * 22 21 20 25 25 C 1.38217 * 119.98511 * 0.02562 * 24 22 21 26 26 C 1.46844 * 111.00064 * 124.21018 * 2 1 3 27 27 H 1.08996 * 109.47524 * 295.79128 * 1 2 3 28 28 H 1.09000 * 109.46940 * 55.78961 * 1 2 3 29 29 H 1.09006 * 109.47080 * 175.78773 * 1 2 3 30 30 H 1.09001 * 109.46241 * 305.85331 * 3 2 1 31 31 H 1.08997 * 109.46159 * 65.82020 * 3 2 1 32 32 H 1.08992 * 109.50800 * 60.75729 * 4 3 2 33 33 H 1.08997 * 109.50061 * 180.88022 * 4 3 2 34 34 H 1.08994 * 109.52635 * 297.74654 * 5 4 3 35 35 H 1.09006 * 109.51936 * 177.55898 * 5 4 3 36 36 H 1.09002 * 109.47098 * 203.84926 * 9 8 6 37 37 H 1.09002 * 109.47325 * 323.84893 * 9 8 6 38 38 H 0.96997 * 119.99787 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47304 * 48.11445 * 18 8 6 40 40 H 1.08997 * 109.47120 * 168.12052 * 18 8 6 41 41 H 1.08006 * 119.98569 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.00351 * 180.26859 * 21 20 19 43 43 H 1.07996 * 120.01201 * 179.97438 * 24 22 21 44 44 H 1.08000 * 119.99505 * 180.02562 * 25 24 22 45 45 H 1.09005 * 109.46232 * 54.14067 * 26 2 1 46 46 H 1.08998 * 109.46471 * 294.17638 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1187 0.5369 1.0144 6 6 3.5181 -0.8715 1.0208 7 1 3.7813 -1.3843 0.0957 8 7 4.0460 -1.6246 2.1663 9 6 3.8679 -0.8745 3.4167 10 6 2.4786 -1.1104 3.9505 11 1 1.7835 -1.7228 3.3952 12 6 2.0947 -0.5446 5.1478 13 7 2.9414 0.2007 5.8243 14 14 0.3723 -0.8365 5.8092 15 1 0.3702 -2.0490 6.6666 16 1 -0.0555 0.3378 6.6114 17 1 -0.5670 -1.0302 4.6755 18 6 5.4573 -1.9763 1.9598 19 6 5.5585 -3.0511 0.9084 20 6 5.4099 -4.3794 1.2615 21 6 5.4970 -5.3651 0.2966 22 6 5.7442 -5.0232 -1.0210 23 17 5.8602 -6.2613 -2.2323 24 6 5.8983 -3.6941 -1.3729 25 6 5.8058 -2.7088 -0.4080 26 6 1.9952 -0.7708 1.1337 27 1 -0.3634 0.4471 0.9252 28 1 -0.3633 0.5778 -0.8499 29 1 -0.3633 -1.0249 -0.0755 30 1 1.5635 1.9257 -0.8330 31 1 1.7324 1.8608 0.9375 32 1 3.7814 0.8567 -1.0906 33 1 3.9099 2.3512 -0.1311 34 1 3.8887 1.0354 1.9560 35 1 5.1997 0.4713 0.8905 36 1 4.6009 -1.2111 4.1499 37 1 4.0078 0.1895 3.2252 38 1 2.6715 0.5985 6.6667 39 1 6.0073 -1.0942 1.6318 40 1 5.8812 -2.3419 2.8950 41 1 5.2218 -4.6465 2.2909 42 1 5.3766 -6.4025 0.5720 43 1 6.0917 -3.4266 -2.4012 44 1 5.9257 -1.6712 -0.6826 45 1 1.5633 -1.7716 1.1242 46 1 1.7325 -0.2709 2.0660 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255490422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:59 Heat of formation + Delta-G solvation = 29.680224 kcal Electronic energy + Delta-G solvation = -25998.678384 eV Core-core repulsion = 22527.872897 eV Total energy + Delta-G solvation = -3470.805487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.67284 -38.68970 -36.58748 -35.88403 -32.84057 -32.42150 -31.14578 -30.93921 -28.97114 -27.26091 -26.24783 -24.57128 -22.95965 -22.69788 -22.20714 -21.36688 -20.27066 -18.55976 -16.96919 -16.39864 -15.73088 -15.27170 -15.15201 -15.12014 -14.48285 -14.28238 -14.02430 -13.77488 -13.64514 -13.40906 -13.29368 -13.08890 -12.82079 -12.41795 -12.14533 -11.92779 -11.65384 -11.44301 -11.36454 -11.25892 -11.15584 -10.99886 -10.93005 -10.70080 -10.67299 -10.58670 -10.24734 -10.13779 -9.87557 -9.54610 -9.25706 -8.88359 -8.47922 -8.39163 -7.79095 -7.24917 -6.06660 -4.05177 1.28558 1.43988 2.18175 3.27356 3.34411 3.36902 3.75099 4.30963 4.40934 4.86814 4.98107 4.99349 5.11623 5.25898 5.28360 5.35246 5.41493 5.50603 5.55320 5.59061 5.76629 5.79805 5.82547 5.87257 5.96711 6.04773 6.10783 6.15355 6.16345 6.17395 6.23276 6.32898 6.33799 6.39424 6.43013 6.61313 6.76604 6.84060 6.93669 6.96967 7.16122 7.38326 7.53148 7.58590 7.79165 8.07645 8.17236 8.47801 9.00124 9.56277 11.03084 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.004077 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.662500 B = 6865.389111 C = 7859.526338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.549 5.549 3 C 0.056 3.944 4 C -0.107 4.107 5 C -0.162 4.162 6 C 0.102 3.898 7 H 0.071 0.929 8 N -0.524 5.524 9 C 0.181 3.819 10 C -0.497 4.497 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.088 3.912 19 C -0.053 4.053 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.042 4.042 23 Cl -0.086 7.086 24 C -0.113 4.113 25 C -0.103 4.103 26 C 0.057 3.943 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.026 0.974 37 H 0.011 0.989 38 H 0.260 0.740 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.069 0.931 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -3.848 -13.332 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.274 5.274 3 C -0.072 4.072 4 C -0.146 4.146 5 C -0.201 4.201 6 C -0.007 4.007 7 H 0.089 0.911 8 N -0.247 5.247 9 C 0.057 3.943 10 C -0.535 4.535 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.040 4.040 19 C -0.054 4.054 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.069 4.069 23 Cl -0.057 7.057 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.070 4.070 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.088 0.912 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.333 -4.521 -13.627 14.997 hybrid contribution -0.782 0.905 1.040 1.585 sum 3.551 -3.616 -12.586 13.569 Atomic orbital electron populations 1.22254 0.88027 1.01755 0.99852 1.61910 1.06990 1.13123 1.45390 1.22029 0.95462 0.89832 0.99867 1.21460 0.94713 0.99471 0.98937 1.22369 0.99284 0.98776 0.99640 1.21460 0.94437 0.90857 0.93951 0.91071 1.62264 1.13144 1.45464 1.03811 1.20003 0.97750 0.92099 0.84477 1.21216 0.97826 1.29757 1.04745 0.91553 1.24963 0.97293 0.95537 0.96818 1.69948 1.34996 1.33544 1.15351 0.86610 0.84761 0.77672 0.79077 1.20623 1.21439 1.19913 1.21105 0.91805 0.94507 0.96631 1.20112 0.95883 0.94966 0.94450 1.21050 0.97782 0.91779 0.99727 1.21019 1.00847 1.00309 0.90989 1.20848 1.06583 0.89447 0.89983 1.98344 1.96810 1.54346 1.56235 1.20932 1.01377 0.90754 1.00083 1.21034 0.99813 0.99018 0.92303 1.22420 0.94181 0.98136 0.92252 0.95717 0.92251 0.91720 0.91798 0.94856 0.91915 0.92318 0.89995 0.92864 0.95608 0.97193 0.92999 0.94452 0.90095 0.84823 0.85368 0.85493 0.85580 0.91231 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.59 60.06 0.58 1.02 16 2 N -0.55 -9.12 4.91 -242.96 -1.19 -10.31 16 3 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 4 C -0.11 -1.55 6.09 -26.65 -0.16 -1.72 16 5 C -0.16 -2.72 4.68 -26.61 -0.12 -2.85 16 6 C 0.10 1.84 2.24 -67.63 -0.15 1.69 16 7 H 0.07 1.25 6.06 -51.93 -0.31 0.94 16 8 N -0.52 -10.21 4.35 -229.43 -1.00 -11.21 16 9 C 0.18 4.28 4.52 -4.98 -0.02 4.26 16 10 C -0.50 -12.88 6.97 -34.44 -0.24 -13.12 16 11 H 0.07 1.73 6.54 -52.49 -0.34 1.39 16 12 C 0.05 1.48 5.46 -17.81 -0.10 1.38 16 13 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 14 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.09 1.44 5.00 -4.98 -0.02 1.42 16 19 C -0.05 -0.78 4.93 -104.62 -0.52 -1.30 16 20 C -0.08 -1.19 9.72 -39.59 -0.38 -1.57 16 21 C -0.11 -1.45 9.83 -39.55 -0.39 -1.84 16 22 C -0.04 -0.54 6.32 -39.50 -0.25 -0.79 16 23 Cl -0.09 -1.00 28.96 -51.86 -1.50 -2.50 16 24 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 16 25 C -0.10 -1.36 8.25 -39.59 -0.33 -1.69 16 26 C 0.06 1.09 3.64 -3.84 -0.01 1.08 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.63 5.73 -51.93 -0.30 1.34 16 35 H 0.05 0.83 6.66 -51.93 -0.35 0.49 16 36 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 37 H 0.01 0.26 5.05 -51.93 -0.26 0.00 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.04 0.59 6.30 -51.93 -0.33 0.26 16 40 H 0.08 1.35 7.60 -51.93 -0.39 0.96 16 41 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 42 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.13 1.53 8.01 -52.49 -0.42 1.11 16 45 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 46 H 0.08 1.77 5.50 -51.93 -0.29 1.49 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -27.23 367.24 -12.13 -39.36 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.16 Total: 2.88 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.54 Total: -14.99 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -1.45 Total: -46.23 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.23 -12.13 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255490422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.045 kcal (2) G-P(sol) polarization free energy of solvation -27.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds