Wall clock time and date at job start Tue Mar 31 2020 13:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 111.00102 * 2 1 4 4 C 1.53040 * 109.52306 * 185.84174 * 3 2 1 5 5 C 1.53124 * 109.27273 * 300.81793 * 4 3 2 6 6 C 1.53118 * 109.16177 * 57.65951 * 5 4 3 7 7 H 1.08998 * 109.53663 * 62.30028 * 6 5 4 8 8 N 1.46899 * 109.50430 * 182.40167 * 6 5 4 9 9 C 1.46900 * 110.99824 * 52.29352 * 8 6 5 10 10 C 1.50697 * 109.47123 * 83.85176 * 9 8 6 11 11 H 1.08002 * 120.00005 * 357.65045 * 10 9 8 12 12 C 1.37876 * 120.00088 * 177.65407 * 10 9 8 13 13 N 1.31526 * 119.99905 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00103 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47180 * 89.99999 * 14 12 10 16 16 H 1.48507 * 109.46873 * 209.99870 * 14 12 10 17 17 H 1.48496 * 109.46933 * 329.99737 * 14 12 10 18 18 C 1.46903 * 111.00036 * 288.34237 * 8 6 5 19 19 C 1.50698 * 109.46901 * 288.11776 * 18 8 6 20 20 C 1.38243 * 119.99083 * 275.32223 * 19 18 8 21 21 C 1.38207 * 120.01461 * 179.72541 * 20 19 18 22 22 C 1.38354 * 119.98842 * 0.54987 * 21 20 19 23 23 Cl 1.73603 * 120.01264 * 179.74755 * 22 21 20 24 24 C 1.38344 * 119.97356 * 359.72052 * 22 21 20 25 25 C 1.38217 * 119.98511 * 0.02562 * 24 22 21 26 26 C 1.46844 * 111.00064 * 124.21018 * 2 1 3 27 27 H 1.08996 * 109.47524 * 295.79128 * 1 2 3 28 28 H 1.09000 * 109.46940 * 55.78961 * 1 2 3 29 29 H 1.09006 * 109.47080 * 175.78773 * 1 2 3 30 30 H 1.09001 * 109.46241 * 305.85331 * 3 2 1 31 31 H 1.08997 * 109.46159 * 65.82020 * 3 2 1 32 32 H 1.08992 * 109.50800 * 60.75729 * 4 3 2 33 33 H 1.08997 * 109.50061 * 180.88022 * 4 3 2 34 34 H 1.08994 * 109.52635 * 297.74654 * 5 4 3 35 35 H 1.09006 * 109.51936 * 177.55898 * 5 4 3 36 36 H 1.09002 * 109.47098 * 203.84926 * 9 8 6 37 37 H 1.09002 * 109.47325 * 323.84893 * 9 8 6 38 38 H 0.96997 * 119.99787 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.47304 * 48.11445 * 18 8 6 40 40 H 1.08997 * 109.47120 * 168.12052 * 18 8 6 41 41 H 1.08006 * 119.98569 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.00351 * 180.26859 * 21 20 19 43 43 H 1.07996 * 120.01201 * 179.97438 * 24 22 21 44 44 H 1.08000 * 119.99505 * 180.02562 * 25 24 22 45 45 H 1.09005 * 109.46232 * 54.14067 * 26 2 1 46 46 H 1.08998 * 109.46471 * 294.17638 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1187 0.5369 1.0144 6 6 3.5181 -0.8715 1.0208 7 1 3.7813 -1.3843 0.0957 8 7 4.0460 -1.6246 2.1663 9 6 3.8679 -0.8745 3.4167 10 6 2.4786 -1.1104 3.9505 11 1 1.7835 -1.7228 3.3952 12 6 2.0947 -0.5446 5.1478 13 7 2.9414 0.2007 5.8243 14 14 0.3723 -0.8365 5.8092 15 1 0.3702 -2.0490 6.6666 16 1 -0.0555 0.3378 6.6114 17 1 -0.5670 -1.0302 4.6755 18 6 5.4573 -1.9763 1.9598 19 6 5.5585 -3.0511 0.9084 20 6 5.4099 -4.3794 1.2615 21 6 5.4970 -5.3651 0.2966 22 6 5.7442 -5.0232 -1.0210 23 17 5.8602 -6.2613 -2.2323 24 6 5.8983 -3.6941 -1.3729 25 6 5.8058 -2.7088 -0.4080 26 6 1.9952 -0.7708 1.1337 27 1 -0.3634 0.4471 0.9252 28 1 -0.3633 0.5778 -0.8499 29 1 -0.3633 -1.0249 -0.0755 30 1 1.5635 1.9257 -0.8330 31 1 1.7324 1.8608 0.9375 32 1 3.7814 0.8567 -1.0906 33 1 3.9099 2.3512 -0.1311 34 1 3.8887 1.0354 1.9560 35 1 5.1997 0.4713 0.8905 36 1 4.6009 -1.2111 4.1499 37 1 4.0078 0.1895 3.2252 38 1 2.6715 0.5985 6.6667 39 1 6.0073 -1.0942 1.6318 40 1 5.8812 -2.3419 2.8950 41 1 5.2218 -4.6465 2.2909 42 1 5.3766 -6.4025 0.5720 43 1 6.0917 -3.4266 -2.4012 44 1 5.9257 -1.6712 -0.6826 45 1 1.5633 -1.7716 1.1242 46 1 1.7325 -0.2709 2.0660 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255490422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:54 Heat of formation + Delta-G solvation = 14.783749 kcal Electronic energy + Delta-G solvation = -25999.324343 eV Core-core repulsion = 22527.872897 eV Total energy + Delta-G solvation = -3471.451446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.151 amu Computer time = 4.51 seconds Orbital eigenvalues (eV) -40.96319 -39.88845 -37.72533 -37.14125 -34.78646 -33.70523 -32.46420 -31.96130 -30.44645 -29.00105 -27.53689 -26.01593 -24.58266 -23.85523 -23.52102 -22.64092 -21.56328 -20.05322 -18.48767 -17.89396 -17.09967 -16.74951 -16.48260 -16.33275 -16.08071 -15.67027 -15.38574 -15.07973 -15.02093 -14.57893 -14.37170 -14.28309 -14.19231 -14.09708 -13.44829 -13.25202 -13.09523 -12.92055 -12.88784 -12.59218 -12.52596 -12.46354 -12.25866 -12.23716 -12.10722 -11.72780 -11.67941 -11.60599 -11.34840 -11.19445 -11.08079 -10.51287 -9.90446 -9.50075 -9.20184 -8.85260 -8.13883 -6.18221 0.22379 0.42130 1.20423 1.37608 1.39097 1.48140 2.39588 2.66783 3.01255 3.16731 3.57205 3.84822 3.91535 3.96932 4.03029 4.05327 4.18820 4.28412 4.35402 4.45241 4.50297 4.60714 4.65016 4.65948 4.74168 4.74824 4.79136 4.87509 4.89847 4.99667 5.02759 5.08551 5.09882 5.20948 5.23262 5.27172 5.30707 5.33302 5.43717 5.60188 5.71431 5.75627 5.90672 6.13868 6.15912 6.23918 6.52118 6.67505 6.93550 7.46624 8.94826 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.004077 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.662500 B = 6865.389111 C = 7859.526338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.054 3.946 4 C -0.101 4.101 5 C -0.155 4.155 6 C 0.107 3.893 7 H 0.085 0.915 8 N -0.532 5.532 9 C 0.198 3.802 10 C -0.496 4.496 11 H 0.061 0.939 12 C 0.005 3.995 13 N -0.933 5.933 14 Si 0.949 3.051 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.092 3.908 19 C -0.068 4.068 20 C -0.096 4.096 21 C -0.114 4.114 22 C -0.046 4.046 23 Cl -0.074 7.074 24 C -0.110 4.110 25 C -0.102 4.102 26 C 0.067 3.933 27 H 0.009 0.991 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.009 0.991 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.066 0.934 36 H -0.002 1.002 37 H -0.006 1.006 38 H 0.260 0.740 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.140 0.860 45 H 0.054 0.946 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -4.218 -16.141 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.139 4.139 5 C -0.194 4.194 6 C -0.001 4.001 7 H 0.103 0.897 8 N -0.255 5.255 9 C 0.072 3.928 10 C -0.534 4.534 11 H 0.079 0.921 12 C -0.192 4.192 13 N -0.575 5.575 14 Si 0.775 3.225 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.036 4.036 19 C -0.068 4.068 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.073 4.073 23 Cl -0.045 7.045 24 C -0.128 4.128 25 C -0.121 4.121 26 C -0.060 4.060 27 H 0.028 0.972 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.028 0.972 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.016 0.984 37 H 0.012 0.988 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.158 0.842 45 H 0.072 0.928 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.153 -4.904 -16.459 17.669 hybrid contribution -0.700 0.965 1.822 2.178 sum 3.453 -3.939 -14.637 15.546 Atomic orbital electron populations 1.22355 0.86920 1.02441 1.00346 1.61983 1.08087 1.13699 1.43331 1.22149 0.96346 0.89056 0.99870 1.21462 0.93853 1.00328 0.98286 1.22257 1.00202 0.97934 0.99023 1.21447 0.93630 0.91577 0.93492 0.89692 1.62144 1.15530 1.44933 1.02878 1.19626 0.95818 0.91475 0.85833 1.21463 0.98693 1.28753 1.04516 0.92128 1.25684 1.00684 0.95567 0.97315 1.70062 1.36742 1.34899 1.15807 0.85688 0.80789 0.77549 0.78481 1.20141 1.21241 1.19343 1.21052 0.89871 0.95544 0.97135 1.19947 0.97803 0.94445 0.94633 1.21089 0.98379 0.92046 0.99979 1.21167 1.00338 1.00803 0.90938 1.21007 1.05946 0.90090 0.90213 1.98352 1.96702 1.53836 1.55582 1.21177 1.00344 0.90335 1.00969 1.21154 0.99307 1.00022 0.91602 1.22151 0.95127 0.97167 0.91599 0.97217 0.89299 0.91419 0.88788 0.97236 0.90059 0.90374 0.93767 0.91553 0.98403 0.98820 0.93096 0.93604 0.91226 0.85364 0.83844 0.83233 0.84236 0.92775 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.59 127.69 1.22 2.00 16 2 N -0.55 -17.43 4.91 -922.60 -4.53 -21.96 16 3 C 0.05 1.55 5.46 86.33 0.47 2.02 16 4 C -0.10 -2.69 6.09 30.65 0.19 -2.50 16 5 C -0.16 -5.16 4.68 30.68 0.14 -5.02 16 6 C 0.11 3.84 2.24 44.97 0.10 3.94 16 7 H 0.09 2.84 6.06 -2.39 -0.01 2.83 16 8 N -0.53 -21.29 4.35 -879.77 -3.82 -25.11 16 9 C 0.20 9.84 4.52 85.56 0.39 10.22 16 10 C -0.50 -26.75 6.97 25.60 0.18 -26.57 16 11 H 0.06 3.28 6.54 -2.91 -0.02 3.26 16 12 C 0.00 0.27 5.46 84.65 0.46 0.74 16 13 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 14 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C 0.09 3.06 5.00 85.56 0.43 3.48 16 19 C -0.07 -1.93 4.93 -19.86 -0.10 -2.03 16 20 C -0.10 -2.65 9.72 22.26 0.22 -2.44 16 21 C -0.11 -2.75 9.83 22.29 0.22 -2.53 16 22 C -0.05 -1.06 6.32 22.32 0.14 -0.92 16 23 Cl -0.07 -1.52 28.96 -2.72 -0.08 -1.60 16 24 C -0.11 -2.42 9.83 22.29 0.22 -2.20 16 25 C -0.10 -2.48 8.25 22.27 0.18 -2.29 16 26 C 0.07 2.61 3.64 86.33 0.31 2.93 16 27 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 29 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.82 5.73 -2.39 -0.01 1.81 16 35 H 0.07 2.00 6.66 -2.38 -0.02 1.99 16 36 H 0.00 -0.12 7.50 -2.39 -0.02 -0.14 16 37 H -0.01 -0.30 5.05 -2.39 -0.01 -0.31 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.05 1.44 6.30 -2.39 -0.02 1.42 16 40 H 0.07 2.44 7.60 -2.39 -0.02 2.42 16 41 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 42 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 43 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.14 2.97 8.01 -2.91 -0.02 2.95 16 45 H 0.05 2.22 8.04 -2.38 -0.02 2.20 16 46 H 0.04 1.83 5.50 -2.39 -0.01 1.81 16 Total: -1.00 -60.28 367.24 -0.38 -60.66 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.96 Total: 17.61 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.78 Total: -21.16 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -8.07 Total: -101.59 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -60.28 -0.38 -60.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255490422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.446 kcal (2) G-P(sol) polarization free energy of solvation -60.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.51 seconds