Wall clock time and date at job start Tue Mar 31 2020 13:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46499 * 109.46992 * 124.99738 * 3 2 1 5 5 C 1.36738 * 127.14258 * 269.68275 * 4 3 2 6 6 C 1.50704 * 126.34143 * 359.96722 * 5 4 3 7 7 C 1.52999 * 109.46940 * 89.99883 * 6 5 4 8 8 C 1.50704 * 109.46940 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00135 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99790 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99554 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 120.00363 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47286 * 89.99922 * 12 10 8 14 14 H 1.48499 * 109.47578 * 210.00398 * 12 10 8 15 15 H 1.48502 * 109.47162 * 330.00311 * 12 10 8 16 16 N 1.30290 * 107.30782 * 179.83763 * 5 4 3 17 17 N 1.28531 * 110.05636 * 0.44144 * 16 5 4 18 18 C 1.31217 * 109.85495 * 359.72176 * 17 16 5 19 19 N 1.38577 * 126.46880 * 180.02562 * 18 17 16 20 20 C 1.46900 * 111.00216 * 123.91094 * 19 18 17 21 21 C 1.46895 * 111.00288 * 359.95652 * 19 18 17 22 22 H 1.08999 * 109.59999 * 310.69792 * 21 19 18 23 23 C 1.52945 * 109.60543 * 190.37953 * 21 19 18 24 24 C 1.53707 * 112.48886 * 209.96736 * 23 21 19 25 25 S 1.83393 * 104.97222 * 2.82338 * 24 23 21 26 26 C 1.55150 * 109.60538 * 71.02518 * 21 19 18 27 27 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 31 31 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 32 32 H 1.08998 * 109.46976 * 210.00061 * 6 5 4 33 33 H 1.08998 * 109.47306 * 329.99674 * 6 5 4 34 34 H 1.08998 * 109.47432 * 299.99899 * 7 6 5 35 35 H 1.09003 * 109.47588 * 60.00175 * 7 6 5 36 36 H 0.97002 * 119.99623 * 180.02562 * 11 10 8 37 37 H 1.09007 * 109.47283 * 59.99744 * 20 19 18 38 38 H 1.08995 * 109.47243 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.47315 * 300.00095 * 20 19 18 40 40 H 1.08994 * 108.88892 * 330.76027 * 23 21 19 41 41 H 1.09003 * 108.88761 * 89.17482 * 23 21 19 42 42 H 1.09000 * 110.33931 * 121.70044 * 24 23 21 43 43 H 1.09003 * 110.33954 * 243.94891 * 24 23 21 44 44 H 1.09000 * 111.13213 * 279.28155 * 26 21 19 45 45 H 1.09002 * 111.13311 * 43.46004 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.7465 1.7990 2.3926 6 6 1.4521 2.3908 2.8880 7 6 0.5665 1.2789 3.4538 8 6 -0.7277 1.8708 3.9498 9 1 -0.9009 2.9338 3.8699 10 6 -1.6900 1.0554 4.5066 11 7 -2.8192 1.5721 4.9399 12 14 -1.3901 -0.7830 4.6456 13 1 -0.7391 -1.0815 5.9465 14 1 -2.6859 -1.5037 4.5636 15 1 -0.5066 -1.2257 3.5371 16 7 3.8364 1.6349 3.0873 17 7 4.7515 1.1085 2.3540 18 6 4.2885 0.9015 1.1438 19 7 4.9832 0.3494 0.0794 20 6 4.2794 -0.8231 -0.4572 21 6 6.3572 0.0058 0.4690 22 1 6.8181 0.8559 0.9720 23 6 7.1687 -0.3551 -0.7762 24 6 8.2792 -1.3754 -0.4790 25 16 8.0794 -1.7895 1.2964 26 6 6.3372 -1.2164 1.4246 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 1.6621 3.1212 3.6694 33 1 0.9368 2.8808 2.0618 34 1 0.3565 0.5485 2.6725 35 1 1.0817 0.7890 4.2801 36 1 -3.4960 0.9985 5.3320 37 1 3.2892 -0.5259 -0.8027 38 1 4.8459 -1.2365 -1.2916 39 1 4.1805 -1.5767 0.3242 40 1 6.4972 -0.7730 -1.5261 41 1 7.6210 0.5518 -1.1777 42 1 8.1492 -2.2666 -1.0929 43 1 9.2589 -0.9316 -0.6566 44 1 6.0995 -0.9139 2.4445 45 1 5.6441 -1.9800 1.0715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338795906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:15 Heat of formation + Delta-G solvation = 119.795866 kcal Electronic energy + Delta-G solvation = -25897.033745 eV Core-core repulsion = 22464.472423 eV Total energy + Delta-G solvation = -3432.561322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.84199 -39.08117 -36.37437 -34.50479 -33.68855 -32.65654 -31.78513 -29.38453 -29.24091 -27.31469 -26.45110 -25.55729 -24.63479 -21.89850 -21.53407 -20.65971 -19.76335 -19.49486 -17.66890 -17.10472 -16.88113 -16.34624 -16.26364 -15.49994 -15.20535 -14.80372 -14.71091 -14.32675 -13.97273 -13.59881 -13.43855 -13.30579 -13.23808 -12.73132 -12.72268 -12.43318 -12.20698 -12.15015 -11.77799 -11.60965 -11.45003 -11.27595 -11.14109 -11.06576 -10.59410 -10.37599 -10.30743 -10.13504 -9.96439 -9.89173 -9.65362 -9.52886 -9.30300 -8.61883 -8.15041 -7.88684 -6.13279 -4.12303 1.51317 1.79122 2.03040 2.07482 2.57112 3.10615 3.24650 3.32486 3.35118 3.50742 4.15432 4.37275 4.41872 4.46407 4.49912 4.56647 4.70151 4.71298 4.78458 4.89243 4.96733 4.98166 5.18582 5.20454 5.22381 5.28074 5.33072 5.41300 5.49964 5.53212 5.68704 5.71292 5.80545 6.02003 6.16346 6.24875 6.39996 6.45065 6.47505 6.54072 6.74426 7.12664 7.21506 7.28149 7.66384 8.41225 8.90252 9.04994 9.48755 10.99700 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.003430 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.321897 B = 8161.748104 C = 8398.974699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.209 4.209 3 C 0.140 3.860 4 N -0.474 5.474 5 C 0.212 3.788 6 C -0.021 4.021 7 C -0.004 4.004 8 C -0.521 4.521 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.899 5.899 12 Si 0.875 3.125 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.268 1.268 16 N -0.292 5.292 17 N -0.320 5.320 18 C 0.334 3.666 19 N -0.440 5.440 20 C -0.006 4.006 21 C 0.101 3.899 22 H 0.115 0.885 23 C -0.126 4.126 24 C -0.071 4.071 25 S -0.283 6.283 26 C -0.099 4.099 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.843 -5.584 -17.931 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.228 4.228 3 C 0.017 3.983 4 N -0.168 5.168 5 C -0.056 4.056 6 C -0.061 4.061 7 C -0.043 4.043 8 C -0.559 4.559 9 H 0.093 0.907 10 C -0.129 4.129 11 N -0.538 5.538 12 Si 0.703 3.297 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.192 1.192 16 N -0.130 5.130 17 N -0.165 5.165 18 C -0.023 4.023 19 N -0.162 5.162 20 C -0.153 4.153 21 C -0.009 4.009 22 H 0.133 0.867 23 C -0.165 4.165 24 C -0.219 4.219 25 S -0.058 6.058 26 C -0.248 4.248 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.441 -5.728 -16.273 24.532 hybrid contribution -1.700 -1.209 -1.234 2.424 sum 15.741 -6.937 -17.508 24.544 Atomic orbital electron populations 1.24077 0.95472 1.03239 0.93880 1.23064 0.96529 0.97452 1.05765 1.20957 0.91835 0.97942 0.87518 1.46233 1.10262 1.48131 1.12218 1.25560 0.99420 1.00297 0.80316 1.20219 0.85803 0.99477 1.00621 1.19557 0.94826 0.93755 0.96118 1.21005 0.98535 0.96296 1.40056 0.90662 1.24939 0.94913 0.98396 0.94680 1.69901 1.07109 1.35718 1.41066 0.86851 0.77470 0.86136 0.79280 1.20119 1.21340 1.19247 1.74021 0.97367 1.17165 1.24490 1.74522 1.24200 1.19803 0.97943 1.22393 0.83795 1.03666 0.92405 1.58816 1.02185 1.29160 1.26079 1.23123 1.00611 0.91122 1.00424 1.22655 0.86348 0.98256 0.93596 0.86696 1.21976 0.96570 1.00086 0.97863 1.23884 1.02209 1.01411 0.94407 1.87968 1.18170 1.85061 1.14576 1.25125 0.94261 0.99632 1.05831 0.87209 0.87711 0.86863 0.88127 0.87731 0.88778 0.90801 0.96342 0.96363 0.92611 0.89043 0.89394 0.93487 0.90009 0.89338 0.89104 0.88026 0.85827 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 13.67 29.02 0.40 -1.14 16 2 C -0.21 -2.41 8.63 -36.02 -0.31 -2.72 16 3 C 0.14 1.60 5.58 -5.19 -0.03 1.58 16 4 N -0.47 -7.15 2.79 -115.37 -0.32 -7.48 16 5 C 0.21 3.89 7.32 -154.02 -1.13 2.76 16 6 C -0.02 -0.41 5.53 -27.88 -0.15 -0.56 16 7 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 8 C -0.52 -14.00 9.66 -34.44 -0.33 -14.33 16 9 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 11 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 12 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 16 N -0.29 -5.91 12.18 32.99 0.40 -5.51 16 17 N -0.32 -5.79 9.94 30.31 0.30 -5.49 16 18 C 0.33 5.01 6.84 -318.87 -2.18 2.83 16 19 N -0.44 -4.92 4.77 -173.49 -0.83 -5.75 16 20 C -0.01 -0.05 7.93 60.06 0.48 0.42 16 21 C 0.10 1.06 2.23 -66.61 -0.15 0.91 16 22 H 0.12 1.43 7.73 -51.93 -0.40 1.03 16 23 C -0.13 -0.91 5.90 -26.39 -0.16 -1.07 16 24 C -0.07 -0.51 7.38 37.52 0.28 -0.23 16 25 S -0.28 -3.13 23.22 -107.50 -2.50 -5.63 16 26 C -0.10 -1.14 6.06 38.30 0.23 -0.91 16 27 H 0.11 1.29 7.84 -52.48 -0.41 0.88 16 28 H 0.10 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.11 1.24 6.16 -52.49 -0.32 0.92 16 30 H 0.10 0.92 7.57 -51.93 -0.39 0.53 16 31 H 0.10 1.15 6.89 -51.93 -0.36 0.79 16 32 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 33 H 0.07 1.26 7.26 -51.93 -0.38 0.88 16 34 H 0.02 0.41 6.50 -51.93 -0.34 0.08 16 35 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.09 0.78 3.47 -51.92 -0.18 0.60 16 38 H 0.09 0.56 6.08 -51.93 -0.32 0.25 16 39 H 0.05 0.47 6.12 -51.93 -0.32 0.15 16 40 H 0.08 0.50 5.84 -51.93 -0.30 0.20 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.12 1.78 7.13 -51.93 -0.37 1.40 16 45 H 0.09 0.99 5.74 -51.93 -0.30 0.69 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -32.26 360.16 -11.16 -43.43 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.48 Total: 1.11 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.27 Total: -10.74 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.33 Total: -50.22 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.50 Total: -5.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.26 -11.16 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338795906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.221 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds