Wall clock time and date at job start Tue Mar 31 2020 13:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46499 * 109.46992 * 124.99738 * 3 2 1 5 5 C 1.36738 * 127.14258 * 269.68275 * 4 3 2 6 6 C 1.50704 * 126.34143 * 359.96722 * 5 4 3 7 7 C 1.52999 * 109.46940 * 89.99883 * 6 5 4 8 8 C 1.50704 * 109.46940 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00135 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99790 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99554 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 120.00363 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47286 * 89.99922 * 12 10 8 14 14 H 1.48499 * 109.47578 * 210.00398 * 12 10 8 15 15 H 1.48502 * 109.47162 * 330.00311 * 12 10 8 16 16 N 1.30290 * 107.30782 * 179.83763 * 5 4 3 17 17 N 1.28531 * 110.05636 * 0.44144 * 16 5 4 18 18 C 1.31217 * 109.85495 * 359.72176 * 17 16 5 19 19 N 1.38577 * 126.46880 * 180.02562 * 18 17 16 20 20 C 1.46900 * 111.00216 * 123.91094 * 19 18 17 21 21 C 1.46895 * 111.00288 * 359.95652 * 19 18 17 22 22 H 1.08999 * 109.59999 * 310.69792 * 21 19 18 23 23 C 1.52945 * 109.60543 * 190.37953 * 21 19 18 24 24 C 1.53707 * 112.48886 * 209.96736 * 23 21 19 25 25 S 1.83393 * 104.97222 * 2.82338 * 24 23 21 26 26 C 1.55150 * 109.60538 * 71.02518 * 21 19 18 27 27 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 31 31 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 32 32 H 1.08998 * 109.46976 * 210.00061 * 6 5 4 33 33 H 1.08998 * 109.47306 * 329.99674 * 6 5 4 34 34 H 1.08998 * 109.47432 * 299.99899 * 7 6 5 35 35 H 1.09003 * 109.47588 * 60.00175 * 7 6 5 36 36 H 0.97002 * 119.99623 * 180.02562 * 11 10 8 37 37 H 1.09007 * 109.47283 * 59.99744 * 20 19 18 38 38 H 1.08995 * 109.47243 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.47315 * 300.00095 * 20 19 18 40 40 H 1.08994 * 108.88892 * 330.76027 * 23 21 19 41 41 H 1.09003 * 108.88761 * 89.17482 * 23 21 19 42 42 H 1.09000 * 110.33931 * 121.70044 * 24 23 21 43 43 H 1.09003 * 110.33954 * 243.94891 * 24 23 21 44 44 H 1.09000 * 111.13213 * 279.28155 * 26 21 19 45 45 H 1.09002 * 111.13311 * 43.46004 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.7465 1.7990 2.3926 6 6 1.4521 2.3908 2.8880 7 6 0.5665 1.2789 3.4538 8 6 -0.7277 1.8708 3.9498 9 1 -0.9009 2.9338 3.8699 10 6 -1.6900 1.0554 4.5066 11 7 -2.8192 1.5721 4.9399 12 14 -1.3901 -0.7830 4.6456 13 1 -0.7391 -1.0815 5.9465 14 1 -2.6859 -1.5037 4.5636 15 1 -0.5066 -1.2257 3.5371 16 7 3.8364 1.6349 3.0873 17 7 4.7515 1.1085 2.3540 18 6 4.2885 0.9015 1.1438 19 7 4.9832 0.3494 0.0794 20 6 4.2794 -0.8231 -0.4572 21 6 6.3572 0.0058 0.4690 22 1 6.8181 0.8559 0.9720 23 6 7.1687 -0.3551 -0.7762 24 6 8.2792 -1.3754 -0.4790 25 16 8.0794 -1.7895 1.2964 26 6 6.3372 -1.2164 1.4246 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 1.6621 3.1212 3.6694 33 1 0.9368 2.8808 2.0618 34 1 0.3565 0.5485 2.6725 35 1 1.0817 0.7890 4.2801 36 1 -3.4960 0.9985 5.3320 37 1 3.2892 -0.5259 -0.8027 38 1 4.8459 -1.2365 -1.2916 39 1 4.1805 -1.5767 0.3242 40 1 6.4972 -0.7730 -1.5261 41 1 7.6210 0.5518 -1.1777 42 1 8.1492 -2.2666 -1.0929 43 1 9.2589 -0.9316 -0.6566 44 1 6.0995 -0.9139 2.4445 45 1 5.6441 -1.9800 1.0715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338795906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:11 Heat of formation + Delta-G solvation = 102.580766 kcal Electronic energy + Delta-G solvation = -25897.780247 eV Core-core repulsion = 22464.472423 eV Total energy + Delta-G solvation = -3433.307825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -44.10062 -39.97544 -37.44791 -36.05731 -34.79574 -33.95293 -33.40542 -30.67371 -30.15695 -28.45526 -27.45188 -26.98505 -25.53329 -23.42148 -22.73891 -21.87838 -20.88511 -20.41660 -19.10514 -18.49777 -17.99225 -17.44565 -17.32448 -16.43613 -16.32464 -16.05877 -15.71687 -15.45931 -15.21498 -15.06403 -14.77830 -14.69712 -14.18463 -13.94921 -13.61057 -13.47169 -13.28297 -13.03971 -13.01830 -12.93097 -12.61879 -12.49997 -12.30243 -12.23174 -12.04312 -11.81022 -11.73953 -11.49726 -11.41223 -11.17891 -11.09133 -10.79712 -10.74964 -10.49700 -9.35181 -8.76413 -8.30066 -6.33023 0.61465 0.76871 0.95627 1.30813 1.31941 1.34767 1.43121 1.54710 1.77867 2.32723 2.53408 3.05932 3.33181 3.41164 3.66508 3.71120 3.71304 3.81542 3.91008 3.94224 3.98726 4.10793 4.13745 4.25446 4.40937 4.43503 4.54950 4.57626 4.58402 4.68520 4.73742 4.79809 4.81628 4.91287 4.95502 5.04740 5.09903 5.28052 5.38834 5.44307 5.51680 5.55261 5.61927 5.64351 6.11698 6.25203 6.73887 7.31304 7.73634 8.86027 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.003430 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.321897 B = 8161.748104 C = 8398.974699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.207 4.207 3 C 0.132 3.868 4 N -0.469 5.469 5 C 0.198 3.802 6 C -0.010 4.010 7 C 0.007 3.993 8 C -0.521 4.521 9 H 0.047 0.953 10 C 0.018 3.982 11 N -0.944 5.944 12 Si 0.935 3.065 13 H -0.280 1.280 14 H -0.279 1.279 15 H -0.250 1.250 16 N -0.329 5.329 17 N -0.353 5.353 18 C 0.352 3.648 19 N -0.429 5.429 20 C -0.010 4.010 21 C 0.103 3.897 22 H 0.090 0.910 23 C -0.118 4.118 24 C -0.052 4.052 25 S -0.336 6.336 26 C -0.090 4.090 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.001 0.999 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.037 0.963 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.129 -7.252 -21.390 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.226 4.226 3 C 0.012 3.988 4 N -0.163 5.163 5 C -0.071 4.071 6 C -0.050 4.050 7 C -0.032 4.032 8 C -0.559 4.559 9 H 0.065 0.935 10 C -0.179 4.179 11 N -0.584 5.584 12 Si 0.759 3.241 13 H -0.206 1.206 14 H -0.205 1.205 15 H -0.173 1.173 16 N -0.167 5.167 17 N -0.197 5.197 18 C -0.005 4.005 19 N -0.152 5.152 20 C -0.156 4.156 21 C -0.007 4.007 22 H 0.108 0.892 23 C -0.156 4.156 24 C -0.200 4.200 25 S -0.111 6.111 26 C -0.239 4.239 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.141 0.859 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.106 0.894 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.737 -7.400 -19.766 28.223 hybrid contribution -2.030 -0.635 -0.233 2.140 sum 16.707 -8.036 -19.999 27.270 Atomic orbital electron populations 1.24202 0.95829 1.03527 0.94261 1.23134 0.96411 0.97716 1.05299 1.21315 0.91883 0.98276 0.87367 1.46329 1.10685 1.47312 1.11946 1.25156 0.98706 1.01460 0.81762 1.19938 0.86003 0.98055 1.01010 1.19370 0.93273 0.94797 0.95720 1.21281 1.00079 0.95192 1.39381 0.93492 1.25734 0.94669 1.02961 0.94580 1.70028 1.08285 1.37504 1.42613 0.85897 0.77867 0.80852 0.79453 1.20602 1.20461 1.17319 1.73926 0.98433 1.18168 1.26198 1.74464 1.24442 1.21397 0.99412 1.22803 0.83614 1.01776 0.92352 1.59001 1.02309 1.30131 1.23775 1.23299 1.01472 0.89765 1.01018 1.22682 0.86185 0.96847 0.94967 0.89199 1.21941 0.96535 1.00947 0.96221 1.24043 1.03018 1.02322 0.90605 1.88169 1.18313 1.85282 1.19353 1.24948 0.94511 1.00241 1.04218 0.87488 0.87098 0.85996 0.85084 0.87237 0.89838 0.88793 0.95273 0.98104 0.92446 0.88302 0.85889 0.94444 0.87743 0.87910 0.86874 0.86507 0.89400 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 13.67 67.78 0.93 -2.09 16 2 C -0.21 -4.17 8.63 25.65 0.22 -3.95 16 3 C 0.13 2.66 5.58 85.63 0.48 3.14 16 4 N -0.47 -13.37 2.79 -518.91 -1.45 -14.82 16 5 C 0.20 7.22 7.32 137.64 1.01 8.23 16 6 C -0.01 -0.39 5.53 29.85 0.16 -0.23 16 7 C 0.01 0.32 4.02 29.85 0.12 0.44 16 8 C -0.52 -28.43 9.66 25.60 0.25 -28.18 16 9 H 0.05 2.76 7.99 -2.91 -0.02 2.74 16 10 C 0.02 1.04 5.47 84.65 0.46 1.50 16 11 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 12 Si 0.93 43.71 27.47 68.60 1.88 45.59 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 16 N -0.33 -13.53 12.18 -49.54 -0.60 -14.13 16 17 N -0.35 -12.89 9.94 -58.00 -0.58 -13.47 16 18 C 0.35 10.09 6.84 260.11 1.78 11.87 16 19 N -0.43 -8.43 4.77 -702.79 -3.35 -11.78 16 20 C -0.01 -0.13 7.93 127.69 1.01 0.88 16 21 C 0.10 1.96 2.23 45.64 0.10 2.06 16 22 H 0.09 2.19 7.73 -2.39 -0.02 2.18 16 23 C -0.12 -1.23 5.90 30.81 0.18 -1.05 16 24 C -0.05 -0.56 7.38 72.22 0.53 -0.02 16 25 S -0.34 -7.09 23.22 -56.49 -1.31 -8.40 16 26 C -0.09 -2.00 6.06 72.72 0.44 -1.56 16 27 H 0.11 2.34 7.84 -2.91 -0.02 2.32 16 28 H 0.11 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.12 2.26 6.16 -2.91 -0.02 2.24 16 30 H 0.13 1.85 7.57 -2.39 -0.02 1.84 16 31 H 0.11 2.13 6.89 -2.39 -0.02 2.12 16 32 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.09 3.14 7.26 -2.39 -0.02 3.12 16 34 H 0.03 1.26 6.50 -2.39 -0.02 1.25 16 35 H 0.00 0.03 7.57 -2.39 -0.02 0.01 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.10 1.26 3.47 -2.38 -0.01 1.25 16 38 H 0.12 0.88 6.08 -2.39 -0.01 0.87 16 39 H 0.04 0.63 6.12 -2.38 -0.01 0.61 16 40 H 0.10 0.67 5.84 -2.39 -0.01 0.65 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 2.63 7.13 -2.39 -0.02 2.61 16 45 H 0.10 2.00 5.74 -2.39 -0.01 1.99 16 Total: -1.00 -72.74 360.16 3.51 -69.23 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.94 Total: 13.62 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 7.68 Total: -8.97 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -5.68 Total: -111.07 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.31 Total: -8.40 kcal Total: -72.74 3.51 -69.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338795906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.811 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.88 seconds