Wall clock time and date at job start Tue Mar 31 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47155 * 2 1 4 4 C 1.53006 * 109.47209 * 171.96631 * 3 2 1 5 5 C 1.53002 * 109.47177 * 196.11370 * 4 3 2 6 6 C 1.53003 * 109.47247 * 291.96058 * 3 2 1 7 7 N 1.46497 * 109.47163 * 175.01359 * 6 3 2 8 8 C 1.46498 * 120.00198 * 282.37201 * 7 6 3 9 9 C 1.50702 * 109.47070 * 274.68998 * 8 7 6 10 10 H 1.07993 * 119.99881 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99875 * 179.97438 * 9 8 7 12 12 N 1.31524 * 120.00275 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00220 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47171 * 59.99675 * 13 11 9 15 15 H 1.48502 * 109.47525 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46904 * 300.00399 * 13 11 9 17 17 C 1.34780 * 120.00045 * 102.37240 * 7 6 3 18 18 O 1.21612 * 120.00302 * 172.57575 * 17 7 6 19 19 C 1.47293 * 119.99705 * 352.58260 * 17 7 6 20 20 C 1.36573 * 125.80282 * 187.99377 * 19 17 7 21 21 C 1.40063 * 106.92412 * 179.97438 * 20 19 17 22 22 C 1.36563 * 106.92665 * 359.97438 * 21 20 19 23 23 C 1.47294 * 125.80588 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00132 * 185.10686 * 23 22 21 25 25 O 1.21611 * 120.00010 * 5.10040 * 23 22 21 26 26 O 1.34545 * 125.80966 * 8.26788 * 19 17 7 27 27 H 1.09005 * 109.47252 * 185.85163 * 1 2 3 28 28 H 1.08999 * 109.47164 * 305.85524 * 1 2 3 29 29 H 1.09001 * 109.46998 * 65.85335 * 1 2 3 30 30 H 1.08997 * 109.47373 * 239.99972 * 2 1 3 31 31 H 1.09006 * 109.47310 * 119.99914 * 2 1 3 32 32 H 1.08995 * 109.47661 * 51.96559 * 3 2 1 33 33 H 1.09009 * 109.46821 * 316.10948 * 4 3 2 34 34 H 1.08992 * 109.47596 * 76.11010 * 4 3 2 35 35 H 1.09004 * 109.46904 * 55.62104 * 5 4 3 36 36 H 1.08997 * 109.47119 * 175.62015 * 5 4 3 37 37 H 1.09000 * 109.46839 * 295.62286 * 5 4 3 38 38 H 1.08998 * 109.46902 * 55.01461 * 6 3 2 39 39 H 1.09002 * 109.47071 * 295.01772 * 6 3 2 40 40 H 1.09000 * 109.46821 * 34.69056 * 8 7 6 41 41 H 1.08998 * 109.47384 * 154.68926 * 8 7 6 42 42 H 0.97005 * 119.99836 * 179.97438 * 12 11 9 43 43 H 1.08003 * 126.53575 * 359.96802 * 20 19 17 44 44 H 1.07998 * 126.53077 * 180.02562 * 21 20 19 45 45 H 0.96999 * 119.99762 * 354.99352 * 24 23 22 46 46 H 0.96996 * 120.00205 * 174.72606 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5567 1.4472 0.2016 5 6 4.0137 2.8517 0.6007 6 6 1.7014 2.1031 -1.3378 7 7 2.0825 3.5170 -1.2945 8 6 1.2359 4.4826 -0.5896 9 6 0.1443 4.9611 -1.5119 10 1 0.0868 4.5834 -2.5220 11 6 -0.7814 5.8803 -1.0659 12 7 -0.7116 6.3400 0.1644 13 14 -2.1348 6.4729 -2.2089 14 1 -2.9584 5.3159 -2.6426 15 1 -2.9930 7.4519 -1.4943 16 1 -1.5287 7.1226 -3.3987 17 6 3.2120 3.9294 -1.9033 18 8 3.4601 5.1172 -1.9846 19 6 4.1459 2.9415 -2.4703 20 6 5.3872 3.2115 -2.9717 21 6 5.9270 1.9928 -3.4020 22 6 4.9925 1.0309 -3.1444 23 6 5.1326 -0.4063 -3.4345 24 7 4.0946 -1.2403 -3.2258 25 8 6.1849 -0.8405 -3.8625 26 8 3.9190 1.6205 -2.5871 27 1 -0.3634 -1.0223 0.1048 28 1 -0.3633 0.6019 0.8329 29 1 -0.3633 0.4204 -0.9378 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5642 1.9961 0.8094 33 1 3.8206 0.7416 0.9895 34 1 4.0476 1.1554 -0.7267 35 1 3.4653 3.1745 1.4857 36 1 5.0814 2.8378 0.8198 37 1 3.8200 3.5435 -0.2192 38 1 0.6303 2.0210 -1.5228 39 1 2.2476 1.6039 -2.1382 40 1 0.7906 4.0059 0.2837 41 1 1.8406 5.3317 -0.2712 42 1 -1.3627 6.9870 0.4781 43 1 5.8620 4.1801 -3.0260 44 1 6.8977 1.8425 -3.8510 45 1 3.2801 -0.9080 -2.8170 46 1 4.1605 -2.1718 -3.4880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269445587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:48 Heat of formation + Delta-G solvation = -51.366778 kcal Electronic energy + Delta-G solvation = -29422.569853 eV Core-core repulsion = 25507.540740 eV Total energy + Delta-G solvation = -3915.029113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.98145 -39.68602 -39.18861 -37.18288 -34.33098 -34.11003 -33.11212 -32.58837 -31.81065 -30.27681 -28.18276 -27.29490 -24.79148 -24.40018 -22.99588 -21.85061 -21.69011 -20.86221 -20.01141 -19.76654 -18.21589 -17.28235 -17.14828 -16.92782 -16.38997 -15.73214 -15.15986 -14.91733 -14.60440 -14.36501 -14.27011 -13.87199 -13.68958 -13.46783 -13.28335 -13.12689 -13.00511 -12.63822 -12.53020 -12.31037 -11.98825 -11.42922 -11.39498 -11.28023 -10.97234 -10.79614 -10.77565 -10.62374 -10.51797 -10.42238 -10.23312 -10.15464 -10.09536 -9.97807 -9.67764 -9.50590 -8.76003 -8.50091 -7.75969 -6.11632 -4.17047 0.68523 1.97149 2.36015 2.96004 3.21382 3.27650 3.32741 3.35368 3.54340 3.66350 4.38239 4.53945 4.77598 4.84720 4.89427 4.96745 5.19280 5.23078 5.33652 5.43131 5.47569 5.56692 5.62822 5.70826 5.74749 5.79552 5.91191 6.04574 6.06542 6.17532 6.19638 6.21930 6.23322 6.34602 6.35478 6.45588 6.55628 6.60036 6.68696 6.93378 7.05191 7.26452 7.35371 7.82502 7.83194 8.11948 8.13839 8.61253 8.87633 9.48142 10.96196 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004535 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.318266 B = 6172.595841 C = 6886.415661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.123 4.123 5 C -0.167 4.167 6 C 0.103 3.897 7 N -0.579 5.579 8 C 0.249 3.751 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.587 3.413 18 O -0.512 6.512 19 C -0.008 4.008 20 C -0.157 4.157 21 C -0.119 4.119 22 C -0.087 4.087 23 C 0.613 3.387 24 N -0.843 5.843 25 O -0.524 6.524 26 O -0.139 6.139 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.265 0.735 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.408 0.592 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 -15.545 -2.023 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.148 4.148 3 C -0.126 4.126 4 C -0.160 4.160 5 C -0.224 4.224 6 C -0.020 4.020 7 N -0.308 5.308 8 C 0.130 3.870 9 C -0.569 4.569 10 H 0.076 0.924 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.373 3.627 18 O -0.390 6.390 19 C -0.063 4.063 20 C -0.177 4.177 21 C -0.139 4.139 22 C -0.139 4.139 23 C 0.398 3.602 24 N -0.407 5.407 25 O -0.402 6.402 26 O -0.036 6.036 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.184 0.816 44 H 0.181 0.819 45 H 0.237 0.763 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.650 -15.032 -2.083 16.995 hybrid contribution -1.090 0.204 -0.462 1.202 sum 6.560 -14.827 -2.544 16.412 Atomic orbital electron populations 1.21846 0.95613 1.01101 1.02793 1.21481 0.96066 0.95941 1.01352 1.21667 0.95881 0.95866 0.99213 1.21762 0.95405 0.97456 1.01370 1.22253 0.99969 0.97479 1.02707 1.22048 1.01815 0.81258 0.96840 1.48279 1.21750 1.09320 1.51481 1.19373 0.88858 0.87070 0.91657 1.21344 1.11422 1.25224 0.98927 0.92366 1.24906 0.97868 0.95834 0.95217 1.69918 1.36450 1.30857 1.15883 0.86564 0.81442 0.78610 0.80857 1.20227 1.21146 1.20133 1.16629 0.80911 0.85989 0.79159 1.90892 1.74942 1.14464 1.58667 1.23217 0.98035 0.80842 1.04186 1.21930 0.94219 1.00101 1.01473 1.21899 1.00415 0.90815 1.00806 1.22288 0.89404 0.94038 1.08207 1.16646 0.83775 0.82708 0.77082 1.43702 1.18017 1.13768 1.65188 1.90898 1.27359 1.75653 1.46276 1.84458 1.36967 1.20395 1.61768 0.93229 0.92302 0.92180 0.92589 0.92065 0.90043 0.92621 0.91642 0.92524 0.93746 0.91111 0.89599 0.89692 0.94470 0.93544 0.92563 0.81608 0.81903 0.76274 0.75942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.59 37.16 0.36 -1.30 16 2 C -0.11 -1.12 5.37 -26.74 -0.14 -1.26 16 3 C -0.11 -1.42 2.04 -90.62 -0.19 -1.60 16 4 C -0.12 -1.60 4.96 -26.73 -0.13 -1.74 16 5 C -0.17 -2.58 8.94 37.16 0.33 -2.24 16 6 C 0.10 1.60 4.75 -4.04 -0.02 1.58 16 7 N -0.58 -11.42 1.37 -176.38 -0.24 -11.66 16 8 C 0.25 6.06 5.11 -5.19 -0.03 6.03 16 9 C -0.53 -14.26 9.38 -34.44 -0.32 -14.58 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 13 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.59 11.74 4.69 -12.58 -0.06 11.68 16 18 O -0.51 -12.19 16.46 5.27 0.09 -12.10 16 19 C -0.01 -0.13 5.21 -36.50 -0.19 -0.32 16 20 C -0.16 -2.23 10.61 -39.50 -0.42 -2.64 16 21 C -0.12 -1.49 10.60 -39.50 -0.42 -1.91 16 22 C -0.09 -1.09 6.91 -36.51 -0.25 -1.34 16 23 C 0.61 7.11 8.08 -12.58 -0.10 7.00 16 24 N -0.84 -6.41 8.87 30.40 0.27 -6.14 16 25 O -0.52 -7.59 17.70 5.27 0.09 -7.50 16 26 O -0.14 -1.85 4.33 4.37 0.02 -1.83 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.06 0.67 6.84 -51.93 -0.35 0.31 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.06 0.58 7.99 -51.93 -0.42 0.16 16 32 H 0.08 1.25 7.28 -51.93 -0.38 0.87 16 33 H 0.06 0.65 7.93 -51.92 -0.41 0.24 16 34 H 0.07 0.84 4.54 -51.93 -0.24 0.60 16 35 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.27 2.74 -51.93 -0.14 1.13 16 38 H 0.09 1.38 6.60 -51.93 -0.34 1.04 16 39 H 0.09 1.17 4.38 -53.17 -0.23 0.94 16 40 H 0.04 0.92 7.42 -51.93 -0.39 0.53 16 41 H 0.05 1.28 7.39 -51.93 -0.38 0.90 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.17 2.20 8.06 -52.48 -0.42 1.77 16 44 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.41 2.56 8.60 -40.82 -0.35 2.20 16 46 H 0.41 2.27 8.93 -40.82 -0.36 1.91 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -31.96 368.09 -6.69 -38.65 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.50 Total: 4.61 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.68 Total: -0.99 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.76 Total: -42.50 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.20 Total: -21.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.96 -6.69 -38.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269445587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.721 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds