Wall clock time and date at job start Tue Mar 31 2020 15:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47155 * 2 1 4 4 C 1.53006 * 109.47209 * 171.96631 * 3 2 1 5 5 C 1.53002 * 109.47177 * 196.11370 * 4 3 2 6 6 C 1.53003 * 109.47247 * 291.96058 * 3 2 1 7 7 N 1.46497 * 109.47163 * 175.01359 * 6 3 2 8 8 C 1.46498 * 120.00198 * 282.37201 * 7 6 3 9 9 C 1.50702 * 109.47070 * 274.68998 * 8 7 6 10 10 H 1.07993 * 119.99881 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99875 * 179.97438 * 9 8 7 12 12 N 1.31524 * 120.00275 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00220 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47171 * 59.99675 * 13 11 9 15 15 H 1.48502 * 109.47525 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46904 * 300.00399 * 13 11 9 17 17 C 1.34780 * 120.00045 * 102.37240 * 7 6 3 18 18 O 1.21612 * 120.00302 * 172.57575 * 17 7 6 19 19 C 1.47293 * 119.99705 * 352.58260 * 17 7 6 20 20 C 1.36573 * 125.80282 * 187.99377 * 19 17 7 21 21 C 1.40063 * 106.92412 * 179.97438 * 20 19 17 22 22 C 1.36563 * 106.92665 * 359.97438 * 21 20 19 23 23 C 1.47294 * 125.80588 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00132 * 185.10686 * 23 22 21 25 25 O 1.21611 * 120.00010 * 5.10040 * 23 22 21 26 26 O 1.34545 * 125.80966 * 8.26788 * 19 17 7 27 27 H 1.09005 * 109.47252 * 185.85163 * 1 2 3 28 28 H 1.08999 * 109.47164 * 305.85524 * 1 2 3 29 29 H 1.09001 * 109.46998 * 65.85335 * 1 2 3 30 30 H 1.08997 * 109.47373 * 239.99972 * 2 1 3 31 31 H 1.09006 * 109.47310 * 119.99914 * 2 1 3 32 32 H 1.08995 * 109.47661 * 51.96559 * 3 2 1 33 33 H 1.09009 * 109.46821 * 316.10948 * 4 3 2 34 34 H 1.08992 * 109.47596 * 76.11010 * 4 3 2 35 35 H 1.09004 * 109.46904 * 55.62104 * 5 4 3 36 36 H 1.08997 * 109.47119 * 175.62015 * 5 4 3 37 37 H 1.09000 * 109.46839 * 295.62286 * 5 4 3 38 38 H 1.08998 * 109.46902 * 55.01461 * 6 3 2 39 39 H 1.09002 * 109.47071 * 295.01772 * 6 3 2 40 40 H 1.09000 * 109.46821 * 34.69056 * 8 7 6 41 41 H 1.08998 * 109.47384 * 154.68926 * 8 7 6 42 42 H 0.97005 * 119.99836 * 179.97438 * 12 11 9 43 43 H 1.08003 * 126.53575 * 359.96802 * 20 19 17 44 44 H 1.07998 * 126.53077 * 180.02562 * 21 20 19 45 45 H 0.96999 * 119.99762 * 354.99352 * 24 23 22 46 46 H 0.96996 * 120.00205 * 174.72606 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5567 1.4472 0.2016 5 6 4.0137 2.8517 0.6007 6 6 1.7014 2.1031 -1.3378 7 7 2.0825 3.5170 -1.2945 8 6 1.2359 4.4826 -0.5896 9 6 0.1443 4.9611 -1.5119 10 1 0.0868 4.5834 -2.5220 11 6 -0.7814 5.8803 -1.0659 12 7 -0.7116 6.3400 0.1644 13 14 -2.1348 6.4729 -2.2089 14 1 -2.9584 5.3159 -2.6426 15 1 -2.9930 7.4519 -1.4943 16 1 -1.5287 7.1226 -3.3987 17 6 3.2120 3.9294 -1.9033 18 8 3.4601 5.1172 -1.9846 19 6 4.1459 2.9415 -2.4703 20 6 5.3872 3.2115 -2.9717 21 6 5.9270 1.9928 -3.4020 22 6 4.9925 1.0309 -3.1444 23 6 5.1326 -0.4063 -3.4345 24 7 4.0946 -1.2403 -3.2258 25 8 6.1849 -0.8405 -3.8625 26 8 3.9190 1.6205 -2.5871 27 1 -0.3634 -1.0223 0.1048 28 1 -0.3633 0.6019 0.8329 29 1 -0.3633 0.4204 -0.9378 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5642 1.9961 0.8094 33 1 3.8206 0.7416 0.9895 34 1 4.0476 1.1554 -0.7267 35 1 3.4653 3.1745 1.4857 36 1 5.0814 2.8378 0.8198 37 1 3.8200 3.5435 -0.2192 38 1 0.6303 2.0210 -1.5228 39 1 2.2476 1.6039 -2.1382 40 1 0.7906 4.0059 0.2837 41 1 1.8406 5.3317 -0.2712 42 1 -1.3627 6.9870 0.4781 43 1 5.8620 4.1801 -3.0260 44 1 6.8977 1.8425 -3.8510 45 1 3.2801 -0.9080 -2.8170 46 1 4.1605 -2.1718 -3.4880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269445587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:47 Heat of formation + Delta-G solvation = -72.695699 kcal Electronic energy + Delta-G solvation = -29423.494744 eV Core-core repulsion = 25507.540740 eV Total energy + Delta-G solvation = -3915.954005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.11379 -41.06642 -40.23842 -38.49873 -35.90331 -34.97875 -34.58864 -34.07094 -32.93822 -31.52838 -29.74273 -28.74581 -26.16588 -25.73708 -24.45522 -22.94257 -22.88168 -21.89282 -21.17144 -21.02523 -19.23698 -18.69469 -18.52539 -18.02563 -17.90444 -17.31947 -16.65114 -16.18262 -15.85979 -15.53927 -15.45374 -15.16434 -14.86600 -14.62374 -14.38355 -14.35969 -14.20159 -14.05931 -14.03455 -13.53905 -13.35609 -13.12128 -12.99594 -12.61103 -12.46913 -12.35576 -12.23617 -11.93632 -11.78978 -11.69321 -11.49593 -11.39769 -11.32141 -11.09688 -11.06597 -10.85027 -10.63111 -9.92270 -9.38313 -8.21876 -6.36537 -0.44690 0.83853 1.18199 1.38064 1.41657 1.48843 2.00638 2.07643 2.09944 2.38696 2.48384 3.08204 3.37966 3.70862 3.82876 3.86779 3.90468 4.13324 4.23248 4.39285 4.40667 4.48846 4.56186 4.60904 4.66761 4.74666 4.84620 4.88757 5.01512 5.09306 5.10306 5.14346 5.19108 5.20080 5.22040 5.28777 5.40473 5.46312 5.51862 5.54282 5.61584 5.76145 5.78727 6.03848 6.24206 6.55201 6.70514 7.07045 7.08078 7.34554 8.84691 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004535 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.318266 B = 6172.595841 C = 6886.415661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.101 4.101 4 C -0.114 4.114 5 C -0.168 4.168 6 C 0.100 3.900 7 N -0.582 5.582 8 C 0.270 3.730 9 C -0.545 4.545 10 H 0.054 0.946 11 C 0.014 3.986 12 N -0.925 5.925 13 Si 0.963 3.037 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.278 1.278 17 C 0.588 3.412 18 O -0.566 6.566 19 C -0.034 4.034 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.070 4.070 23 C 0.616 3.384 24 N -0.818 5.818 25 O -0.552 6.552 26 O -0.131 6.131 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.027 0.973 41 H 0.003 0.997 42 H 0.267 0.733 43 H 0.170 0.830 44 H 0.185 0.815 45 H 0.418 0.582 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -18.785 -3.332 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.121 4.121 4 C -0.151 4.151 5 C -0.226 4.226 6 C -0.021 4.021 7 N -0.310 5.310 8 C 0.150 3.850 9 C -0.583 4.583 10 H 0.073 0.927 11 C -0.186 4.186 12 N -0.564 5.564 13 Si 0.787 3.213 14 H -0.185 1.185 15 H -0.205 1.205 16 H -0.204 1.204 17 C 0.377 3.623 18 O -0.448 6.448 19 C -0.087 4.087 20 C -0.162 4.162 21 C -0.141 4.141 22 C -0.124 4.124 23 C 0.399 3.601 24 N -0.382 5.382 25 O -0.432 6.432 26 O -0.028 6.028 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.045 0.955 41 H 0.021 0.979 42 H 0.076 0.924 43 H 0.188 0.812 44 H 0.202 0.798 45 H 0.249 0.751 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.832 -18.346 -3.385 20.233 hybrid contribution -1.093 1.140 -0.050 1.581 sum 6.739 -17.205 -3.435 18.795 Atomic orbital electron populations 1.21849 0.96127 1.02013 1.01447 1.21474 0.95534 0.93527 1.03581 1.21603 0.96145 0.97651 0.96671 1.21721 0.94893 0.96072 1.02424 1.22244 1.00544 0.98728 1.01043 1.22316 1.01677 0.79018 0.99080 1.48166 1.21478 1.10369 1.51015 1.18744 0.88122 0.86716 0.91460 1.21634 1.12164 1.25534 0.98992 0.92746 1.25768 1.00247 0.95884 0.96691 1.70038 1.37413 1.31413 1.17578 0.85540 0.78634 0.78542 0.78551 1.18499 1.20474 1.20385 1.16963 0.80928 0.86186 0.78217 1.90842 1.76196 1.16988 1.60796 1.22278 0.97939 0.81352 1.07168 1.22119 0.93340 1.01108 0.99657 1.22122 1.01379 0.89782 1.00811 1.22667 0.88622 0.94794 1.06269 1.16500 0.84149 0.82270 0.77134 1.43541 1.17179 1.14056 1.63451 1.90906 1.28673 1.75743 1.47854 1.84355 1.37356 1.19114 1.61994 0.90937 0.94404 0.93061 0.89597 0.90472 0.92984 0.90341 0.90780 0.94100 0.92678 0.93660 0.90445 0.87406 0.95540 0.97901 0.92393 0.81236 0.79756 0.75072 0.74265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.59 71.98 0.69 -2.35 16 2 C -0.10 -1.79 5.37 30.59 0.16 -1.62 16 3 C -0.10 -2.60 2.04 -10.79 -0.02 -2.63 16 4 C -0.11 -2.79 4.96 30.60 0.15 -2.64 16 5 C -0.17 -5.30 8.94 71.98 0.64 -4.66 16 6 C 0.10 3.08 4.75 86.38 0.41 3.49 16 7 N -0.58 -24.00 1.37 -830.20 -1.14 -25.14 16 8 C 0.27 14.05 5.11 85.63 0.44 14.49 16 9 C -0.54 -30.46 9.38 25.60 0.24 -30.22 16 10 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 11 C 0.01 0.77 5.46 84.65 0.46 1.23 16 12 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 13 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 14 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 C 0.59 24.49 4.69 86.62 0.41 24.90 16 18 O -0.57 -28.72 16.46 -4.07 -0.07 -28.79 16 19 C -0.03 -1.05 5.21 24.26 0.13 -0.93 16 20 C -0.14 -3.87 10.61 22.32 0.24 -3.63 16 21 C -0.12 -2.72 10.60 22.32 0.24 -2.48 16 22 C -0.07 -1.55 6.91 24.26 0.17 -1.38 16 23 C 0.62 11.95 8.08 86.62 0.70 12.65 16 24 N -0.82 -8.77 8.87 -175.98 -1.56 -10.33 16 25 O -0.55 -14.16 17.70 -4.07 -0.07 -14.23 16 26 O -0.13 -3.18 4.33 -7.28 -0.03 -3.21 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 29 H 0.05 1.07 6.84 -2.39 -0.02 1.06 16 30 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 31 H 0.08 1.16 7.99 -2.38 -0.02 1.14 16 32 H 0.05 1.66 7.28 -2.39 -0.02 1.64 16 33 H 0.08 1.60 7.93 -2.38 -0.02 1.58 16 34 H 0.07 1.69 4.54 -2.39 -0.01 1.68 16 35 H 0.04 1.37 8.07 -2.39 -0.02 1.35 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 1.69 2.74 -2.39 -0.01 1.69 16 38 H 0.08 2.50 6.60 -2.39 -0.02 2.48 16 39 H 0.11 2.78 4.38 -22.07 -0.10 2.68 16 40 H 0.03 1.41 7.42 -2.39 -0.02 1.40 16 41 H 0.00 0.17 7.39 -2.39 -0.02 0.16 16 42 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 43 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 45 H 0.42 3.14 8.60 -92.71 -0.80 2.34 16 46 H 0.42 2.77 8.93 -92.71 -0.83 1.94 16 Total: -1.00 -73.43 368.09 3.82 -69.62 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -0.68 Total: 16.29 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 5.05 Total: 4.21 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -2.41 Total: -89.82 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.17 Total: -46.24 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -73.43 3.82 -69.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269445587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.080 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds