Wall clock time and date at job start Tue Mar 31 2020 14:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41379 * 126.80021 * 2 1 4 4 C 1.35447 * 103.98939 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.78254 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46975 * 89.99477 * 5 4 3 7 7 C 1.42905 * 113.99721 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.46808 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00306 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00030 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63336 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.68039 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.53007 * 109.46118 * 181.38770 * 13 12 11 15 15 C 1.50699 * 109.47144 * 174.99788 * 14 13 12 16 16 H 1.07998 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99734 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99659 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00304 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47023 * 89.99989 * 19 17 15 21 21 H 1.48496 * 109.47296 * 210.00080 * 19 17 15 22 22 H 1.48508 * 109.46806 * 330.00272 * 19 17 15 23 23 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 24 24 C 1.47207 * 120.81118 * 0.14238 * 10 8 7 25 25 O 1.34040 * 106.44113 * 0.24096 * 4 3 2 26 26 N 1.20923 * 111.56896 * 359.56385 * 25 4 3 27 27 H 1.09007 * 109.47246 * 89.99920 * 1 2 3 28 28 H 1.09007 * 109.46958 * 209.99594 * 1 2 3 29 29 H 1.09000 * 109.47580 * 329.99691 * 1 2 3 30 30 H 1.08011 * 128.00791 * 0.03410 * 3 2 1 31 31 H 1.09011 * 109.46857 * 330.00250 * 5 4 3 32 32 H 1.09000 * 109.47560 * 209.99923 * 5 4 3 33 33 H 1.08992 * 109.47241 * 60.00227 * 7 6 5 34 34 H 1.09000 * 109.47072 * 299.99682 * 7 6 5 35 35 H 1.09002 * 109.58861 * 113.82042 * 11 10 8 36 36 H 1.08996 * 109.58519 * 353.53933 * 11 10 8 37 37 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 38 38 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 39 39 H 1.09005 * 109.46002 * 301.35718 * 13 12 11 40 40 H 1.08996 * 109.46924 * 295.00300 * 14 13 12 41 41 H 1.09004 * 109.46756 * 54.99920 * 14 13 12 42 42 H 0.96997 * 119.99856 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.49557 * 58.58503 * 23 13 12 44 44 H 1.08996 * 109.50003 * 178.68400 * 23 13 12 45 45 H 1.08996 * 109.53610 * 6.53286 * 24 10 8 46 46 H 1.09002 * 109.68003 * 246.22753 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6070 -0.0006 5 6 4.9021 1.3697 -0.0014 6 8 5.3136 1.6111 1.3457 7 6 6.5420 2.3326 1.4577 8 6 6.8781 2.5290 2.9135 9 8 6.1383 2.0943 3.7708 10 7 8.0008 3.1877 3.2630 11 6 8.3423 3.3866 4.6781 12 6 8.5793 4.8796 4.9261 13 6 9.6390 5.3930 3.9486 14 6 9.9035 6.8761 4.2162 15 6 11.0325 7.3514 3.3384 16 1 11.5135 6.6644 2.6580 17 6 11.4519 8.6632 3.4047 18 7 12.4367 9.0781 2.6382 19 14 10.6213 9.8510 4.5830 20 1 11.3221 9.8210 5.8920 21 1 10.6779 11.2250 4.0227 22 1 9.2035 9.4512 4.7713 23 6 9.1401 5.2151 2.5128 24 6 8.9097 3.7254 2.2375 25 8 3.4537 -0.7252 -0.0063 26 7 2.2868 -1.0422 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 2.0708 2.1744 0.0005 31 1 4.7647 2.3212 -0.5153 32 1 5.6657 0.7860 -0.5155 33 1 6.4382 3.3039 0.9742 34 1 7.3397 1.7692 0.9738 35 1 9.2473 2.8282 4.9176 36 1 7.5214 3.0379 5.3046 37 1 7.6486 5.4260 4.7735 38 1 8.9249 5.0281 5.9491 39 1 10.5620 4.8293 4.0846 40 1 9.0044 7.4511 3.9951 41 1 10.1746 7.0137 5.2630 42 1 12.7321 10.0009 2.6851 43 1 8.2041 5.7584 2.3830 44 1 9.8854 5.6024 1.8181 45 1 8.4616 3.6009 1.2518 46 1 9.8613 3.1950 2.2758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574693422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:31 Heat of formation + Delta-G solvation = -48.926569 kcal Electronic energy + Delta-G solvation = -26524.812599 eV Core-core repulsion = 22609.889301 eV Total energy + Delta-G solvation = -3914.923298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.96446 -41.25696 -39.22073 -38.31321 -35.78803 -35.67042 -34.11771 -33.68384 -32.24300 -30.50864 -29.61781 -29.26154 -27.23379 -25.91970 -24.14115 -24.10069 -23.11441 -21.37413 -21.21990 -20.01404 -18.92919 -18.79815 -18.57858 -17.99736 -17.46935 -17.34500 -16.59148 -16.34535 -15.97228 -15.83701 -15.29910 -15.05153 -14.86923 -14.64262 -14.44445 -14.21083 -14.17222 -14.11216 -13.97136 -13.57307 -13.48154 -13.21820 -13.09314 -12.83991 -12.75828 -12.40034 -12.16822 -12.11784 -11.95648 -11.71859 -11.30773 -11.21513 -11.00452 -10.91022 -10.81181 -10.79162 -10.68669 -10.53586 -9.63364 -8.23452 -6.24263 0.27238 1.17022 1.36647 1.39190 1.49260 1.55554 1.74005 2.08224 2.39090 2.94228 3.12564 3.23983 3.41761 3.61832 3.92014 3.99497 4.02032 4.08363 4.13467 4.22568 4.22802 4.26794 4.33762 4.43836 4.44824 4.57018 4.58287 4.67341 4.68605 4.83753 4.87156 4.88257 4.89830 4.95194 5.12285 5.19897 5.21588 5.26049 5.39312 5.42305 5.61558 5.76165 5.76793 5.92537 6.36419 6.41572 6.83426 7.13692 7.20965 7.39672 8.92402 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.002033 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.151877 B =13770.578222 C =13989.286390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.005 3.995 3 C -0.210 4.210 4 C -0.039 4.039 5 C 0.140 3.860 6 O -0.394 6.394 7 C 0.048 3.952 8 C 0.509 3.491 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.116 3.884 12 C -0.122 4.122 13 C -0.071 4.071 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.046 0.954 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.939 3.061 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.251 1.251 23 C -0.118 4.118 24 C 0.109 3.891 25 O 0.084 5.916 26 N -0.397 5.397 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.200 0.800 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.263 0.737 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.386 -15.046 -7.985 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.154 4.154 3 C -0.231 4.231 4 C -0.103 4.103 5 C 0.063 3.937 6 O -0.314 6.314 7 C -0.031 4.031 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.339 5.339 11 C -0.006 4.006 12 C -0.161 4.161 13 C -0.090 4.090 14 C -0.046 4.046 15 C -0.550 4.550 16 H 0.064 0.936 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.764 3.236 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.175 1.175 23 C -0.156 4.156 24 C -0.012 4.012 25 O 0.019 5.981 26 N -0.105 5.105 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.217 0.783 31 H 0.141 0.859 32 H 0.119 0.881 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.134 0.866 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.993 -16.515 -7.422 26.241 hybrid contribution 0.311 1.807 0.494 1.899 sum -18.682 -14.708 -6.928 24.766 Atomic orbital electron populations 1.20340 0.83554 1.04755 1.04675 1.24313 1.00783 0.88649 1.01618 1.22927 0.90613 1.02373 1.07148 1.24527 0.98920 0.83322 1.03516 1.21000 0.89387 0.99286 0.84023 1.88018 1.39991 1.76748 1.26610 1.22445 0.88168 0.99793 0.92648 1.20879 0.80107 0.77351 0.91884 1.90694 1.50462 1.51337 1.53536 1.48263 1.22687 1.54767 1.08136 1.21566 1.01293 0.96157 0.81617 1.21939 0.98996 0.94952 1.00164 1.20938 0.97185 0.95832 0.95040 1.19601 0.95154 0.94388 0.95504 1.21455 1.16475 0.95360 1.21708 0.93558 1.25890 0.95490 1.00456 0.97348 1.70047 1.29794 1.17465 1.41861 0.85828 0.80425 0.78027 0.79339 1.19784 1.21450 1.17483 1.21821 1.01200 0.95520 0.97073 1.22091 0.94298 0.93480 0.91344 1.84773 1.21637 1.23849 1.67840 1.73848 0.89821 1.25646 1.21142 0.88460 0.90755 0.88024 0.78275 0.85893 0.88080 0.86538 0.86309 0.90186 0.90436 0.92697 0.90372 0.92121 0.96888 0.97074 0.92822 0.92447 0.91079 0.86565 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.47 71.24 0.75 -0.09 16 2 C 0.00 0.09 7.33 43.58 0.32 0.41 16 3 C -0.21 -3.40 11.06 22.40 0.25 -3.15 16 4 C -0.04 -0.72 7.12 25.04 0.18 -0.54 16 5 C 0.14 1.69 6.50 71.24 0.46 2.15 16 6 O -0.39 -8.14 9.86 -129.94 -1.28 -9.42 16 7 C 0.05 0.75 4.77 71.23 0.34 1.09 16 8 C 0.51 13.09 7.78 87.66 0.68 13.77 16 9 O -0.58 -20.78 15.91 15.99 0.25 -20.53 16 10 N -0.60 -14.40 2.98 -818.10 -2.44 -16.84 16 11 C 0.12 2.99 6.42 86.36 0.55 3.54 16 12 C -0.12 -3.49 5.36 30.67 0.16 -3.32 16 13 C -0.07 -2.39 2.10 -10.77 -0.02 -2.42 16 14 C -0.01 -0.39 3.52 29.85 0.10 -0.29 16 15 C -0.51 -27.17 8.94 25.60 0.23 -26.94 16 16 H 0.05 2.65 7.30 -2.91 -0.02 2.62 16 17 C 0.00 0.26 5.47 84.66 0.46 0.72 16 18 N -0.95 -57.29 13.96 21.45 0.30 -56.99 16 19 Si 0.94 43.13 27.47 68.60 1.88 45.01 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.25 -10.81 6.54 99.48 0.65 -10.15 16 23 C -0.12 -3.40 5.19 30.69 0.16 -3.24 16 24 C 0.11 2.17 6.35 86.32 0.55 2.72 16 25 O 0.08 1.97 11.20 71.63 0.80 2.77 16 26 N -0.40 -9.71 12.07 -49.57 -0.60 -10.31 16 27 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.20 1.97 8.06 -2.90 -0.02 1.95 16 31 H 0.12 0.64 8.14 -2.38 -0.02 0.63 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.12 1.14 7.70 -2.39 -0.02 1.12 16 34 H 0.12 1.07 7.95 -2.39 -0.02 1.05 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 2.18 7.00 -2.39 -0.02 2.16 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.01 0.56 7.20 -2.39 -0.02 0.55 16 41 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 44 H 0.07 2.36 6.91 -2.39 -0.02 2.35 16 45 H 0.12 1.41 5.97 -2.39 -0.01 1.39 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -78.71 376.12 5.01 -73.69 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.92 Total: 8.17 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 5.18 Total: -15.57 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.74 Total: -84.14 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.22 Total: -27.17 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.01 kcal Total: -78.71 5.01 -73.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574693422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.768 kcal (2) G-P(sol) polarization free energy of solvation -78.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds